TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144766.5 + phase: 0 
         (393 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11914 homologue to UP|Q7PDW6 (Q7PDW6) ENSANGP00000024926 (Frag...    27  4.5
TC18782 similar to UP|Q8LCU7 (Q8LCU7) Nuclear receptor binding f...    27  5.9

>TC11914 homologue to UP|Q7PDW6 (Q7PDW6) ENSANGP00000024926 (Fragment),
           partial (6%)
          Length = 599

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 14/36 (38%), Positives = 18/36 (49%)
 Frame = +3

Query: 237 SMMELWPIEERGQPIFIQQDNAKTHIDSEDQDFRCV 272
           S + + P E   QPI   QD  +TH+  E Q   CV
Sbjct: 285 SSIMMLPRERNAQPIKKLQD*TRTHVMDECQGLSCV 392


>TC18782 similar to UP|Q8LCU7 (Q8LCU7) Nuclear receptor binding factor-like
           protein, partial (57%)
          Length = 832

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
 Frame = +3

Query: 325 SFEEYDTILSNRIFLSLQSCMIEIMKVKGTHNYKIPHMK---KEQLERRKELP-----TQ 376
           S    D I+ N     +  C+I++ K +G HN  I   +    E  ER K+L      T+
Sbjct: 69  SLNSGDAIVQNGATSMVGQCVIQLAKSRGIHNINIIRDRPGVDEVKERLKDLGADEVFTE 248

Query: 377 RKCDIQLVQEVL 388
           ++ +++ V+ +L
Sbjct: 249 KELEVKNVKSLL 284


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,105,833
Number of Sequences: 28460
Number of extensions: 75949
Number of successful extensions: 369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of query: 393
length of database: 4,897,600
effective HSP length: 92
effective length of query: 301
effective length of database: 2,279,280
effective search space: 686063280
effective search space used: 686063280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)