TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144765.5 - phase: 0 /pseudo
         (443 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV427422                                                               82  2e-16
BP055130                                                               72  2e-13
AU089582                                                               54  8e-13
BF177840                                                               32  0.21
TC13084                                                                32  0.27
TC9298 UP|CAE02644 (CAE02644) Ornithine decarboxylase  , complete      29  1.4
TC18250 similar to UP|Q8L741 (Q8L741) AT3g13690/MMM17_12, partia...    27  6.8

>AV427422 
          Length = 417

 Score = 81.6 bits (200), Expect = 2e-16
 Identities = 34/66 (51%), Positives = 51/66 (76%)
 Frame = +1

Query: 203 SRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQNIVKLHGVPSSIVSDRDPRFTS 262
           S+G++++ VVVDRL+K +HF+P+   Y    +A+I+++ +V+LHGVP SIVSDRDP F S
Sbjct: 19  SKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMS 198

Query: 263 RFWRSL 268
            FW+ L
Sbjct: 199 NFWKEL 216


>BP055130 
          Length = 567

 Score = 72.0 bits (175), Expect = 2e-13
 Identities = 34/62 (54%), Positives = 43/62 (68%)
 Frame = +2

Query: 205 GHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQNIVKLHGVPSSIVSDRDPRFTSRF 264
           G   I VVVDRL+K  HF P   +Y  +Q+AE ++  IVKLHG+P +IVSDRD  FTS F
Sbjct: 179 GFTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAF 358

Query: 265 WR 266
           W+
Sbjct: 359 WK 364


>AU089582 
          Length = 383

 Score = 54.3 bits (129), Expect(3) = 8e-13
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +2

Query: 232 AQLAEIYIQNIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
           +Q A+IY+  IV LHGVP SI+SDR  +FTS FWRS Q
Sbjct: 14  SQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQ 127



 Score = 28.1 bits (61), Expect(3) = 8e-13
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 269 QMRWVRN*N*VQLIIRRLMVSRRGQSNL*RIC 300
           ++ W  +* *V L I +LMVS RG    *RIC
Sbjct: 126 KLLWELD*K*VPLFILKLMVSPRGLFRS*RIC 221



 Score = 26.9 bits (58), Expect(3) = 8e-13
 Identities = 18/40 (45%), Positives = 18/40 (45%)
 Frame = +1

Query: 312 GIVIYH**NSHTTTVTIRVLVWHHSKLYMVGSVRLLYVGS 351
           GI I  * NSH          WHH K  MVG    L VGS
Sbjct: 256 GISICL*WNSHIIIAIGLAFRWHHLKPCMVGDAGHL*VGS 375


>BF177840 
          Length = 410

 Score = 32.0 bits (71), Expect = 0.21
 Identities = 13/19 (68%), Positives = 16/19 (83%)
 Frame = +2

Query: 250 SSIVSDRDPRFTSRFWRSL 268
           +SIVSDRD +F S FWR+L
Sbjct: 11  TSIVSDRDTKFISHFWRTL 67


>TC13084 
          Length = 508

 Score = 31.6 bits (70), Expect = 0.27
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 85  SNQAEESDFKVDEQGVLRFRGRICI 109
           SN  E+SD+  +E+   RFRGR CI
Sbjct: 157 SNMTEDSDYDEEEEDYPRFRGRYCI 231


>TC9298 UP|CAE02644 (CAE02644) Ornithine decarboxylase  , complete
          Length = 1522

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 15/60 (25%), Positives = 24/60 (40%)
 Frame = -2

Query: 146 WWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTPLDVPEWKWDSISMDFVSSLPNTSRG 205
           WWS     +A F +   T       +  P   +  LD+P+W   S ++   S  P  + G
Sbjct: 930 WWSPKWARIAAFTFVAATSSSGPQVNPPPMSRIDILDIPKWLAISKTLLAASIAPERASG 751


>TC18250 similar to UP|Q8L741 (Q8L741) AT3g13690/MMM17_12, partial (3%)
          Length = 757

 Score = 26.9 bits (58), Expect = 6.8
 Identities = 19/51 (37%), Positives = 24/51 (46%), Gaps = 6/51 (11%)
 Frame = -2

Query: 203 SRGHDSIWVVVDRLTKSAHFIPINIS------YPVAQLAEIYIQNIVKLHG 247
           +R  D IW V+     S HFIP+NIS      YP    A   I N + + G
Sbjct: 189 ARNMDVIWTVI-----SFHFIPLNISQGHNETYPAQNSA---INNSITISG 61


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.341    0.148    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,323,177
Number of Sequences: 28460
Number of extensions: 94038
Number of successful extensions: 754
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of query: 443
length of database: 4,897,600
effective HSP length: 93
effective length of query: 350
effective length of database: 2,250,820
effective search space: 787787000
effective search space used: 787787000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 57 (26.6 bits)