TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144765.4 - phase: 0 /pseudo
         (364 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11237 similar to UP|Q43614 (Q43614) DNA-binding protein, parti...    27  7.1

>TC11237 similar to UP|Q43614 (Q43614) DNA-binding protein, partial (20%)
          Length = 523

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 8   RTVSVN*RSG*RQLRF*FCRSPMNLLWFTVMRPSW 42
           + +S N     RQLR  +C   + L W  ++RP W
Sbjct: 241 KMISENQSFSFRQLRNQWCCLLLRLWWIAIIRPGW 345


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.379    0.173    0.672 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,972,621
Number of Sequences: 28460
Number of extensions: 79855
Number of successful extensions: 995
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 531
length of query: 364
length of database: 4,897,600
effective HSP length: 91
effective length of query: 273
effective length of database: 2,307,740
effective search space: 630013020
effective search space used: 630013020
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.7 bits)
S2: 56 (26.2 bits)