TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144765.18 - phase: 2 /pseudo
         (374 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10586 similar to GB|CAA80380.1|1673365|ATTRNASYA mitochondrial...   153  4e-38
TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-d...    30  0.50
AV412781                                                               28  1.9
BI419863                                                               28  2.5
TC11504 similar to UP|O82273 (O82273) At2g31110 protein, partial...    27  7.2
TC18719                                                                26  9.4
TC8347 UP|ATPH_LOTJA (P12231) ATP synthase C chain  (Lipid-bindi...    26  9.4

>TC10586 similar to GB|CAA80380.1|1673365|ATTRNASYA mitochondrial tRNA-Ala
           synthetase {Arabidopsis thaliana;} , partial (9%)
          Length = 644

 Score =  153 bits (387), Expect = 4e-38
 Identities = 74/87 (85%), Positives = 79/87 (90%)
 Frame = +1

Query: 27  NNDDPTCIEIWNLVLXQFNREADSSLKSLPAKHVDTGMGFERLTSILQRKLSNYDTDVFM 86
           NNDDPTCIEIWNLV  QFNREAD SLKSLPAKHVDTGMGFERLTSILQ ++S+YDTDVF+
Sbjct: 25  NNDDPTCIEIWNLVFIQFNREADGSLKSLPAKHVDTGMGFERLTSILQNQMSHYDTDVFL 204

Query: 87  PIFDAIQLATGARPYSGKVGPEDADKI 113
           PIFDAIQLATGARPYSGKVG  D  +I
Sbjct: 205 PIFDAIQLATGARPYSGKVGA*D*GRI 285


>TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-dioxygenase,
            partial (97%)
          Length = 2266

 Score = 30.4 bits (67), Expect = 0.50
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 214  KFKTAVGHVQGNILSGEATFELWDTYGFPLDLTQ 247
            KFK   GHV G+IL G    +  + +G P  LT+
Sbjct: 1084 KFKDTFGHVGGSILGGFVGLKRPENHGVPYSLTE 1185


>AV412781 
          Length = 329

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 21/81 (25%), Positives = 40/81 (48%)
 Frame = +2

Query: 176 ANVLGDVFPELKQQEVHIRNVIQEEEESFGRTLVKGIAKFKTAVGHVQGNILSGEATFEL 235
           AN+L D + E    +  +  ++ + ++S   T V+G       VGH+    LS   + E 
Sbjct: 62  ANILLDDYCEAVVGDFGLAKLL-DHQDSHVTTAVRG------TVGHIAPEYLSTGQSSEK 220

Query: 236 WDTYGFPLDLTQLMAEEKKLK 256
            D +GF + L +L+  ++ L+
Sbjct: 221 TDVFGFGILLLELITGQRALE 283


>BI419863 
          Length = 535

 Score = 28.1 bits (61), Expect = 2.5
 Identities = 25/106 (23%), Positives = 41/106 (38%)
 Frame = +2

Query: 100 PYSGKVGPEDADKIDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGRE 159
           P S K+ P D D +  AY ++A               PG+      +R++LR A   GR+
Sbjct: 56  PGSVKMVPVDPDDLWFAYNLIA---------------PGDSVMAVTIRKVLREAANGGRD 190

Query: 160 VLKAEEGFFNGLVNVVANVLGDVFPELKQQEVHIRNVIQEEEESFG 205
             + +       + V    + D   E     V  +NV++ E    G
Sbjct: 191 AERVKL-----KLEVKVEQVADYDKEGSLLRVRGKNVLENEHVKIG 313


>TC11504 similar to UP|O82273 (O82273) At2g31110 protein, partial (40%)
          Length = 579

 Score = 26.6 bits (57), Expect = 7.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 215 FKTAVGHVQGNILSGEATFELWD 237
           FK   G +QG  L  + TF +W+
Sbjct: 454 FKITFGRIQGKFLPKQCTFTIWE 386


>TC18719 
          Length = 517

 Score = 26.2 bits (56), Expect = 9.4
 Identities = 8/12 (66%), Positives = 9/12 (74%)
 Frame = -1

Query: 22  CCIFGNNDDPTC 33
           CC+ G N DPTC
Sbjct: 178 CCLGGRNQDPTC 143


>TC8347 UP|ATPH_LOTJA (P12231) ATP synthase C chain  (Lipid-binding
           protein) (Subunit III) , complete
          Length = 1267

 Score = 26.2 bits (56), Expect = 9.4
 Identities = 15/42 (35%), Positives = 21/42 (49%)
 Frame = +3

Query: 209 VKGIAKFKTAVGHVQGNILSGEATFELWDTYGFPLDLTQLMA 250
           V+GIA+   A G ++G +L   A  E    YG  + L  L A
Sbjct: 594 VEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 719


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,017,885
Number of Sequences: 28460
Number of extensions: 56591
Number of successful extensions: 260
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of query: 374
length of database: 4,897,600
effective HSP length: 92
effective length of query: 282
effective length of database: 2,279,280
effective search space: 642756960
effective search space used: 642756960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)