BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144765.14 - phase: 0
(113 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8668 similar to UP|Q8W4Q4 (Q8W4Q4) AT4g24800/F6I7_10, partial ... 29 0.13
AU252068 27 0.49
TC10663 similar to UP|Q8VYH1 (Q8VYH1) AT5g65000/MXK3_23, partial... 25 1.4
AV780548 25 1.4
BP030820 25 1.8
TC7821 homologue to UP|VAB2_GOSHI (Q43433) Vacuolar ATP synthase... 25 1.8
TC18021 similar to UP|AAH27795 (AAH27795) Zfp294 protein (Fragme... 25 2.4
BI418313 24 3.2
BP069674 24 4.1
TC16985 similar to UP|Q9LVY7 (Q9LVY7) Cytochrome P450-like, part... 24 4.1
AV774219 24 4.1
TC19328 similar to UP|O48525 (O48525) At2g42180 protein, partial... 23 5.4
BP084236 23 5.4
TC10592 similar to AAR27999 (AAR27999) TFIIA-L2 (Fragment), part... 23 5.4
BP046167 23 5.4
TC11299 23 7.0
BP061576 23 7.0
TC11422 UP|NIA_LOTJA (P39869) Nitrate reductase [NADH] (NR) , c... 23 7.0
TC8446 homologue to UP|Q93YH4 (Q93YH4) ATP citrate lyase a-subun... 23 7.0
AW164164 23 9.2
>TC8668 similar to UP|Q8W4Q4 (Q8W4Q4) AT4g24800/F6I7_10, partial (39%)
Length = 1216
Score = 28.9 bits (63), Expect = 0.13
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +3
Query: 35 LEDANAILREAAEIFEGLGMVDSAAQCFTDLG 66
+EDA + + E +E G+V A QC DLG
Sbjct: 519 VEDAKDKIMKLLEEYESSGVVSEACQCIRDLG 614
>AU252068
Length = 377
Score = 26.9 bits (58), Expect = 0.49
Identities = 13/39 (33%), Positives = 20/39 (50%)
Frame = +3
Query: 66 GDYERAGINFNFGIHVYSFMSFSIKKHYDILEHKYQVYP 104
G+ ER + F F +H YS + SI+ + L + YP
Sbjct: 189 GNRERFHLYFQFKVHPYSTRTASIRNDFTDLTSPHTWYP 305
>TC10663 similar to UP|Q8VYH1 (Q8VYH1) AT5g65000/MXK3_23, partial (27%)
Length = 584
Score = 25.4 bits (54), Expect = 1.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 92 HYDILEHKYQVYPTWSYI 109
HY L+HK+Q+ P+WS +
Sbjct: 566 HY-ALQHKFQIEPSWSVL 516
>AV780548
Length = 298
Score = 25.4 bits (54), Expect = 1.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 76 NFGIHVYSFMSFSIKKHYDILEHKYQVYPTWSYI 109
+FG H+YS+ ++ ++ H+ K Y W Y+
Sbjct: 115 SFGCHIYSWFNYKLQVHFYFCW*K---YIKWGYL 207
>BP030820
Length = 470
Score = 25.0 bits (53), Expect = 1.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 77 FGIHVYSFMSFSIKKHYDIL 96
+ I +YS+ + S+ KHY +L
Sbjct: 408 YNIIIYSYPNISLNKHYQVL 467
>TC7821 homologue to UP|VAB2_GOSHI (Q43433) Vacuolar ATP synthase subunit B
isoform 2 (V-ATPase B subunit 2) (Vacuolar proton pump
B subunit 2) (Fragment) , partial (17%)
Length = 646
Score = 25.0 bits (53), Expect = 1.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 77 FGIHVYSFMSFSIKKHYDILEHKYQVYPTWSYI 109
+G V + SI+ HY ++EH +V+ + YI
Sbjct: 307 YGRLVRELRNESIEDHYKLIEHVIKVWMSLQYI 209
>TC18021 similar to UP|AAH27795 (AAH27795) Zfp294 protein (Fragment),
partial (10%)
Length = 646
Score = 24.6 bits (52), Expect = 2.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 87 FSIKKHYDILEHKYQVYPTWSYIVF 111
FSI H I+E Q + T Y++F
Sbjct: 358 FSINLHDSIIEEAGQCFATHGYVIF 432
>BI418313
Length = 574
Score = 24.3 bits (51), Expect = 3.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 12 SYWGKKSKAASLRATAIRLH 31
SYW K+ ++ SLR T R+H
Sbjct: 496 SYWIKRFQSMSLRKTV*RVH 555
>BP069674
Length = 513
Score = 23.9 bits (50), Expect = 4.1
Identities = 7/19 (36%), Positives = 12/19 (62%)
Frame = -1
Query: 95 ILEHKYQVYPTWSYIVFIC 113
+ + K+Q +PTW V +C
Sbjct: 246 LYQQKFQTHPTWMCTVSLC 190
>TC16985 similar to UP|Q9LVY7 (Q9LVY7) Cytochrome P450-like, partial (25%)
Length = 942
Score = 23.9 bits (50), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 82 YSFMSFSIKKHYDILEHKYQVYPTWS 107
YSF F I+K +I + + P WS
Sbjct: 149 YSFQPFGIEKPLNIKSWRASLKPPWS 72
>AV774219
Length = 337
Score = 23.9 bits (50), Expect = 4.1
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 70 RAGINFNFGIHVYSFM-SFSIKKHYDILEHKYQVYPTWSYIVF 111
+ G+ G V F+ FS +HY H + Y IVF
Sbjct: 79 KIGLKVELGEDVSPFLPQFSFHQHYSSAGHSFSKYHITKSIVF 207
>TC19328 similar to UP|O48525 (O48525) At2g42180 protein, partial (31%)
Length = 547
Score = 23.5 bits (49), Expect = 5.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 61 CFTDLGDYERAGINFNFGIHVYSFMSFS 88
CF++L + +N + I ++SF SFS
Sbjct: 135 CFSNLNFSWQWAMNISANISIFSFTSFS 52
>BP084236
Length = 164
Score = 23.5 bits (49), Expect = 5.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 79 IHVYSFMSFSIKK 91
IH+Y +M FS+KK
Sbjct: 133 IHIYIYMYFSVKK 95
>TC10592 similar to AAR27999 (AAR27999) TFIIA-L2 (Fragment), partial (17%)
Length = 584
Score = 23.5 bits (49), Expect = 5.4
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +3
Query: 61 CFTDLGDYERAGINFNFGIHV 81
C+ D+GD + + NFG+++
Sbjct: 390 CYIDVGDVHKGKV*ANFGLYL 452
>BP046167
Length = 503
Score = 23.5 bits (49), Expect = 5.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -1
Query: 80 HVYSFMSFSIKKHYDI 95
H+ F++F KHYD+
Sbjct: 431 HLQGFLTFQNSKHYDV 384
>TC11299
Length = 498
Score = 23.1 bits (48), Expect = 7.0
Identities = 12/43 (27%), Positives = 20/43 (45%)
Frame = -1
Query: 33 LNLEDANAILREAAEIFEGLGMVDSAAQCFTDLGDYERAGINF 75
+ + D+N I++ AE F+G V D+ + E I F
Sbjct: 366 VKISDSNIIIKFEAEFFDGGSGVAKEKNRVDDVAEEETVVIGF 238
>BP061576
Length = 528
Score = 23.1 bits (48), Expect = 7.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 72 GINFNFGIHVYSFMSFSIKKHYDILEHKY 100
G ++F + +SF SFS + I Y
Sbjct: 384 GSTYSFQLRFFSFCSFSFSTFFQISRFSY 470
>TC11422 UP|NIA_LOTJA (P39869) Nitrate reductase [NADH] (NR) , complete
Length = 2932
Score = 23.1 bits (48), Expect = 7.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 10 GDSYWGKKSKAAS 22
G SYWGKKS S
Sbjct: 1834 GGSYWGKKSLRCS 1796
>TC8446 homologue to UP|Q93YH4 (Q93YH4) ATP citrate lyase a-subunit ,
partial (81%)
Length = 1679
Score = 23.1 bits (48), Expect = 7.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 79 IHVYSFMSFSIKKHYDILEH 98
+H+ MS SI H ++L+H
Sbjct: 392 LHIRPLMSSSILHHLEVLQH 451
>AW164164
Length = 394
Score = 22.7 bits (47), Expect = 9.2
Identities = 7/16 (43%), Positives = 8/16 (49%)
Frame = +3
Query: 98 HKYQVYPTWSYIVFIC 113
H Y P WS+ F C
Sbjct: 66 HNYNYKPPWSWCFFCC 113
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,953,094
Number of Sequences: 28460
Number of extensions: 19996
Number of successful extensions: 141
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of query: 113
length of database: 4,897,600
effective HSP length: 89
effective length of query: 24
effective length of database: 2,364,660
effective search space: 56751840
effective search space used: 56751840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)
Medicago: description of AC144765.14