BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144765.13 + phase: 0
(146 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP044444 102 3e-23
TC9488 31 0.075
TC14879 26 3.1
AV774440 26 3.1
TC16038 similar to UP|Q9LXT8 (Q9LXT8) Pre-mRNA splicing factor A... 26 3.1
BP066034 25 4.1
BP084098 25 4.1
TC19462 similar to UP|Q9SI74 (Q9SI74) F23N19.12, partial (5%) 25 5.3
AV408794 25 5.3
AV768577 25 5.3
TC14828 homologue to UP|O65734 (O65734) Endoxyloglucan transfera... 25 5.3
TC16709 weakly similar to PIR|T47573|T47573 peptide transport-li... 25 7.0
TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2,... 24 9.1
TC16067 UP|Q9ZRY4 (Q9ZRY4) NDX1 homeobox protein, complete 24 9.1
TC15781 24 9.1
>BP044444
Length = 482
Score = 102 bits (254), Expect = 3e-23
Identities = 48/59 (81%), Positives = 52/59 (87%)
Frame = -1
Query: 74 DLKLAIKKKVNYMEQSSMGHRHISWRSVWANYCLSFDNNKLLNDDDVLQNLGVRNNSQV 132
DLKLAIKKKVN MEQS+MGHR ISWR VWA CLS++N+KLLNDDD LQN GVRNNSQV
Sbjct: 482 DLKLAIKKKVNDMEQSNMGHRQISWRGVWAKCCLSYNNHKLLNDDDALQNFGVRNNSQV 306
>TC9488
Length = 543
Score = 31.2 bits (69), Expect = 0.075
Identities = 16/37 (43%), Positives = 23/37 (61%)
Frame = -3
Query: 2 GEGAEYKSGLKKAKVLKALLEDPILADVPKNPTLEDV 38
GEG E+K KK V KA+L P+L +PK+P+ +
Sbjct: 274 GEG-EWKPRNKKKTV*KAILFSPLLTKIPKSPSARSI 167
>TC14879
Length = 1021
Score = 25.8 bits (55), Expect = 3.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 90 SMGHRHISWRSVWANYCLSF 109
++GH + W+S W CL F
Sbjct: 648 TIGHYALHWKSQWYKMCLEF 707
>AV774440
Length = 561
Score = 25.8 bits (55), Expect = 3.1
Identities = 13/32 (40%), Positives = 16/32 (49%)
Frame = -3
Query: 10 GLKKAKVLKALLEDPILADVPKNPTLEDVETL 41
G K + LL D+PKNP L D+E L
Sbjct: 232 GSPKPYTQRNLLSAITPQDLPKNPNLSDIENL 137
>TC16038 similar to UP|Q9LXT8 (Q9LXT8) Pre-mRNA splicing factor
ATP-dependent RNA helicase-like protein, partial (6%)
Length = 666
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/41 (26%), Positives = 23/41 (55%)
Frame = -1
Query: 100 SVWANYCLSFDNNKLLNDDDVLQNLGVRNNSQVSSTYLCHC 140
+V++ +C ++ ++D +N+G + SQ ST + HC
Sbjct: 159 AVFSRFCFFLCSSNDVSDSLTEKNMGPSSASQWGSTAVAHC 37
>BP066034
Length = 557
Score = 25.4 bits (54), Expect = 4.1
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -1
Query: 2 GEGAEYKSGLKKAKVLKALLEDPILADVPKNPTLEDVETLIGLELGSAMRITVLKLDTTS 61
G+ E S L A +L+ LED P + I + LGS + + V+KLD
Sbjct: 221 GDSTEIDSNLP-ADILEQNLEDKEKEGSPSLSYVVHSHKSIVIVLGSCLSMVVMKLDLKK 45
Query: 62 F 62
F
Sbjct: 44 F 42
>BP084098
Length = 492
Score = 25.4 bits (54), Expect = 4.1
Identities = 18/55 (32%), Positives = 24/55 (42%)
Frame = +1
Query: 68 NTATLKDLKLAIKKKVNYMEQSSMGHRHISWRSVWANYCLSFDNNKLLNDDDVLQ 122
NTA LK K +KV EQS + R + + C + D N D D L+
Sbjct: 319 NTAALKIQKCFRGRKVVRAEQSDLRERFL---RIHGKNCQNLDRNAFGPDSDFLR 474
>TC19462 similar to UP|Q9SI74 (Q9SI74) F23N19.12, partial (5%)
Length = 535
Score = 25.0 bits (53), Expect = 5.3
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = -1
Query: 107 LSFDNNKLLNDDDVLQNLGVRNNSQVSSTYL 137
LSF KL N ++NLG R++ Q +T +
Sbjct: 265 LSFWMQKLCNSGGAMKNLGRRDSLQAKTTII 173
>AV408794
Length = 319
Score = 25.0 bits (53), Expect = 5.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 69 TATLKDLKLAIKKKVNYMEQSSMGHRHISWRSVWANY 105
T +D + + ++N+++ +G R+ S S+W NY
Sbjct: 24 TVFQRDASVLLFPQLNFLQTLVVGIRYQSL*SIWTNY 134
>AV768577
Length = 497
Score = 25.0 bits (53), Expect = 5.3
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 76 KLAIKKKVNYMEQ---SSMGHRHISWRSVWANY 105
KLA++ +V+ + S+ R +WRSVW Y
Sbjct: 210 KLAVRPRVDPTRR*TCGSVAAREGAWRSVWRQY 112
>TC14828 homologue to UP|O65734 (O65734) Endoxyloglucan transferase, partial
(98%)
Length = 993
Score = 25.0 bits (53), Expect = 5.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 92 GHRHISWRSVWANYCLSFDNNKL 114
GH+ SWR W ++C F KL
Sbjct: 238 GHKDGSWRFSWHSHCFLFIFPKL 306
>TC16709 weakly similar to PIR|T47573|T47573 peptide transport-like protein
- Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(41%)
Length = 712
Score = 24.6 bits (52), Expect = 7.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 80 KKKVNYMEQSSMGHRHISWRSVWAN 104
+ K+++ S MGHRH +W++
Sbjct: 321 RTKIHFKNASCMGHRHHICHCLWSD 395
>TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2, complete
Length = 2946
Score = 24.3 bits (51), Expect = 9.1
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 98 WRSV-WANYCLSFDNNKLLNDDDVLQNLGVRNNSQVSSTY 136
W S+ WA C+S + N D +++ GV+ SS +
Sbjct: 1105 WNSLDWAGGCVSMEKLSCQNGDGFMKHTGVKLPDTSSSWF 1224
>TC16067 UP|Q9ZRY4 (Q9ZRY4) NDX1 homeobox protein, complete
Length = 3271
Score = 24.3 bits (51), Expect = 9.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 9 SGLKKAKVLKALLEDPILADVPKNPTLEDVETL 41
S L++ K++K E+P +DV NP+ D++ +
Sbjct: 59 SALERMKIVK---ENPSDSDVQANPSRSDIQVI 148
>TC15781
Length = 621
Score = 24.3 bits (51), Expect = 9.1
Identities = 15/49 (30%), Positives = 25/49 (50%)
Frame = +2
Query: 42 IGLELGSAMRITVLKLDTTSFDVILMNTATLKDLKLAIKKKVNYMEQSS 90
IGL++ S + VLKL V + + L LK +KV++++ S
Sbjct: 200 IGLKIYSCRTLVVLKLKGYPLGVYVSSHVELPSLKSLHLEKVHFVDFQS 346
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,486,819
Number of Sequences: 28460
Number of extensions: 29332
Number of successful extensions: 245
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of query: 146
length of database: 4,897,600
effective HSP length: 82
effective length of query: 64
effective length of database: 2,563,880
effective search space: 164088320
effective search space used: 164088320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC144765.13