TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144765.10 - phase: 0 
         (552 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662087                                                               94  6e-20
BE122516                                                               92  3e-19
AV410603                                                               74  6e-14
TC18698                                                                42  3e-04
TC12574                                                                36  0.014
AV779679                                                               34  0.070
BP043519                                                               30  1.0
BP048192                                                               30  1.3
BP053926                                                               27  8.6

>BG662087 
          Length = 373

 Score = 94.0 bits (232), Expect = 6e-20
 Identities = 45/119 (37%), Positives = 70/119 (58%)
 Frame = +1

Query: 198 GSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQK 257
           G  R+ +DY  LNK   K+ YPLP ID L+D     ++ S +D  SGYHQIK+   D  K
Sbjct: 16  GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195

Query: 258 TAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEH 316
           TAF T   +Y Y+ +PFG+ NA   +   M+R+F   + + + V++D++++ S +   H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372


>BE122516 
          Length = 364

 Score = 91.7 bits (226), Expect = 3e-19
 Identities = 50/115 (43%), Positives = 70/115 (60%)
 Frame = +2

Query: 50  GMNWLEYNRVCINCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQ 109
           GMNWL  N   +NC  KTV F ++E ++     T K  K  E +  ++   + +   +  
Sbjct: 17  GMNWLTANDATLNCRKKTVTFGTSEGDAKRVKRTDKVGKASECESDVLLGALETDKSDTG 196

Query: 110 VVIDRLPVVNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELA 164
           V  + +PVV EF +VFP+E+ ++PPEREVEFSID VPG   +S+APY MS  ELA
Sbjct: 197 V--EGIPVVREFSDVFPEEVSELPPEREVEFSID*VPGTGPISIAPYRMSLVELA 355


>AV410603 
          Length = 162

 Score = 73.9 bits (180), Expect = 6e-14
 Identities = 31/53 (58%), Positives = 43/53 (80%)
 Frame = +1

Query: 213 TIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYG 265
           T+K+ +P+P +D+L+D+L G++ FSK+DLRSGYHQI VK ED  KT FRT +G
Sbjct: 4   TVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162


>TC18698 
          Length = 808

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 20/61 (32%), Positives = 35/61 (56%)
 Frame = -2

Query: 256 QKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEE 315
           +KT  +    +Y Y+VMP G+ N    +   M++IFH  + K V V+++D+++ S  E  
Sbjct: 804 KKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*F 625

Query: 316 H 316
           H
Sbjct: 624 H 622


>TC12574 
          Length = 325

 Score = 36.2 bits (82), Expect = 0.014
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +2

Query: 283 FMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEE 315
           F   +N IF +F + F++VFI+DIL Y++ +EE
Sbjct: 2   FKNSVNHIFESFFEHFMIVFINDILSYTEDKEE 100


>AV779679 
          Length = 440

 Score = 33.9 bits (76), Expect = 0.070
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 199 SMRLCIDYRQLNKVTIKNRYPLPRIDDLMD 228
           +M+LC DY QL+ VTI N+  LP +D+  D
Sbjct: 345 TMQLCDDYMQLDYVTIPNKSLLPHLDEWSD 434


>BP043519 
          Length = 456

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 20/59 (33%), Positives = 27/59 (44%)
 Frame = +3

Query: 218 YPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGV 276
           Y LP +  LMD+  GA      D    Y  +    +   K AFR +YG  +  VMPF +
Sbjct: 237 YALPMLSILMDKGTGAVTSVPSDAPDDYMALL---DLKSKPAFRAKYGVKDEWVMPFEI 404


>BP048192 
          Length = 551

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 506 SRFEVFSDHKSLKYLFDQ---KELNMRQRRWLELLKDYD 541
           + F  ++D+ ++ Y   Q   KE+++ + RW   +KDYD
Sbjct: 192 THFLTYADNNAVGYFIKQGFTKEIHLEKERWQGYIKDYD 308


>BP053926 
          Length = 562

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 236 FSKIDLRSGYHQIKVKDEDMQKTAFRTR---YGHYEYKVMPFGVTNAPGV 282
           +  +   S  ++I   D ++Q  AF T+    GH +YK + + V + PG+
Sbjct: 226 YPNVGKSSFINKITRADVEVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 375


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,295,872
Number of Sequences: 28460
Number of extensions: 121928
Number of successful extensions: 564
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of query: 552
length of database: 4,897,600
effective HSP length: 95
effective length of query: 457
effective length of database: 2,193,900
effective search space: 1002612300
effective search space used: 1002612300
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)