TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144765.1 + phase: 0 /pseudo
         (52 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP057101                                                               24  5.5

>BP057101 
          Length = 546

 Score = 24.3 bits (51), Expect = 5.5
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +1

Query: 33  SSCRMLYEGSVNTWYVKYT 51
           SS ++L  GSV+TW  K T
Sbjct: 256 SSAQLLVSGSVHTWKFKQT 312


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 988,748
Number of Sequences: 28460
Number of extensions: 8159
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of query: 52
length of database: 4,897,600
effective HSP length: 28
effective length of query: 24
effective length of database: 4,100,720
effective search space: 98417280
effective search space used: 98417280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)