BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144731.11 - phase: 0
(76 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 57 5e-10
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 57 6e-10
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 56 1e-09
BP030058 54 4e-09
TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-l... 50 6e-08
TC8210 homologue to PIR|T10586|T10586 small nuclear ribonucleopr... 48 4e-07
AV773560 48 4e-07
TC8209 homologue to PIR|T10586|T10586 small nuclear ribonucleopr... 48 4e-07
AU251550 47 9e-07
AU251973 46 1e-06
CN825698 46 1e-06
TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precu... 44 4e-06
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 44 4e-06
AV427333 44 6e-06
TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (... 43 9e-06
CB827825 43 9e-06
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 43 9e-06
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 43 9e-06
TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate... 42 2e-05
TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-... 42 2e-05
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 57.4 bits (137), Expect = 5e-10
Identities = 28/55 (50%), Positives = 32/55 (57%), Gaps = 6/55 (10%)
Frame = +2
Query: 3 GKGCGGGGGAKGGG------GGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSY 51
G+G GGGGG GGG GGGGG++ GGG G G GGG + GGGG Y
Sbjct: 596 GRGGGGGGGGYGGGRREGGYGGGGGSRYSGGGGGGYGGSGGGGYGGRREGGGGGY 760
Score = 54.3 bits (129), Expect = 4e-09
Identities = 27/56 (48%), Positives = 30/56 (53%)
Frame = +2
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRGAF 57
GG G GGG GGGGGG G GGGG GG GG + GGG Y S G++
Sbjct: 647 GGYGGGGGSRYSGGGGGGYGGSGGGGYGGRREGGGGGYGGSREGGGGSRYSSGGSW 814
Score = 45.1 bits (105), Expect = 2e-06
Identities = 26/56 (46%), Positives = 30/56 (53%)
Frame = +2
Query: 12 AKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRGAFESNPQGYFGG 67
A+G GGGGGG GG GG + G GGG S + GGGG Y G G +GG
Sbjct: 590 ARGRGGGGGG--GGYGGGRREGGYGGGGGSRYSGGGGGGYGGSGG------GGYGG 733
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 57.0 bits (136), Expect = 6e-10
Identities = 31/66 (46%), Positives = 37/66 (55%), Gaps = 2/66 (3%)
Frame = +1
Query: 4 KGCGGGGGAKGGG--GGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRGAFESNP 61
+G GGGGG +GGG GGGGG + GG G G + G GGG GGGG Y R
Sbjct: 319 RGGGGGGGGRGGGGYGGGGGRREGGYGGGGGSRGYGGGGGGYGGGGGGGYGGR------R 480
Query: 62 QGYFGG 67
+G +GG
Sbjct: 481 EGGYGG 498
Score = 53.5 bits (127), Expect = 7e-09
Identities = 26/48 (54%), Positives = 29/48 (60%)
Frame = +1
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGG 49
G +G GGGGG GGGGGG G GG +G GG GGG + GGGG
Sbjct: 409 GSRGYGGGGGGYGGGGGG----GYGGRREGGYGGDGGGSRYGSGGGGG 540
Score = 53.1 bits (126), Expect = 9e-09
Identities = 31/61 (50%), Positives = 35/61 (56%), Gaps = 7/61 (11%)
Frame = +1
Query: 2 GGKGCGGGGGAKGGG-GGGGGTKG--GGGGSKGSTGGSGGGDSMK----APGGGGSYISR 54
GG G GGGGG + GG GGGGG++G GGGG G GG G G + GGG Y S
Sbjct: 349 GGGGYGGGGGRREGGYGGGGGSRGYGGGGGGYGGGGGGGYGGRREGGYGGDGGGSRYGSG 528
Query: 55 G 55
G
Sbjct: 529 G 531
Score = 47.8 bits (112), Expect = 4e-07
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +1
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKA 44
GG G GGGGG GG GG G GGGS+ +GG GGG + ++
Sbjct: 430 GGGGYGGGGGGGYGGRREGGYGGDGGGSRYGSGGGGGGGNWRS 558
Score = 42.0 bits (97), Expect = 2e-05
Identities = 25/60 (41%), Positives = 29/60 (47%), Gaps = 4/60 (6%)
Frame = +1
Query: 12 AKGGGGGGGGTKGGGGGSKGS----TGGSGGGDSMKAPGGGGSYISRGAFESNPQGYFGG 67
A+ GGGGGG GGGG G GG GGG + GGGG G + G +GG
Sbjct: 310 AQARGGGGGGGGRGGGGYGGGGGRREGGYGGGGGSRGYGGGG-----GGYGGGGGGGYGG 474
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 56.2 bits (134), Expect = 1e-09
Identities = 29/51 (56%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 2 GGKGCGG-GGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSY 51
GG G GG GGG GGGG GGG GGGG G GG GG GGGG Y
Sbjct: 282 GGAGGGGRGGGGYGGGGYGGGGYGGGGRGGGGYGGGGGYGGSGGYGGGGGY 434
Score = 55.5 bits (132), Expect = 2e-09
Identities = 31/56 (55%), Positives = 32/56 (56%), Gaps = 2/56 (3%)
Frame = +3
Query: 2 GGKGCGG--GGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRG 55
GG+G GG GGG GGG GGGG GGG G G GGSGG GGGG RG
Sbjct: 297 GGRGGGGYGGGGYGGGGYGGGGRGGGGYGGGGGYGGSGGYGGGGGYGGGGRGGGRG 464
Score = 53.9 bits (128), Expect = 5e-09
Identities = 28/49 (57%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 2 GGKGCGG-GGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGG 49
GG G GG GGG +GGGG GGG GG G G GG GGG GGGG
Sbjct: 327 GGYGGGGYGGGGRGGGGYGGGGGYGGSGGYGGGGGYGGGGRGGGRGGGG 473
Score = 53.9 bits (128), Expect = 5e-09
Identities = 30/64 (46%), Positives = 33/64 (50%)
Frame = +3
Query: 4 KGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRGAFESNPQG 63
+G G GGG +GGGG GGG GGGG G GG G GGGG Y G + G
Sbjct: 276 RGGGAGGGGRGGGGYGGGGYGGGGYGGGGRGGGG-------YGGGGGYGGSGGY-GGGGG 431
Query: 64 YFGG 67
Y GG
Sbjct: 432 YGGG 443
Score = 51.6 bits (122), Expect = 3e-08
Identities = 24/38 (63%), Positives = 24/38 (63%)
Frame = +3
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGG 39
GG G GGGGG G GG GGG GGGG G GG GGG
Sbjct: 366 GGGGYGGGGGYGGSGGYGGGGGYGGGGRGGGRGGGGGG 479
>BP030058
Length = 455
Score = 54.3 bits (129), Expect = 4e-09
Identities = 25/46 (54%), Positives = 26/46 (56%)
Frame = +1
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGG 47
GG G GGGGG GGGGGG G GGG GG GGG +P G
Sbjct: 298 GGGGEGGGGGGGDGGGGGGDGHGSGGGGGEGDGGGGGGSPQVSPQG 435
Score = 52.4 bits (124), Expect = 2e-08
Identities = 30/63 (47%), Positives = 36/63 (56%)
Frame = +1
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRGAFESNP 61
G +G GGGG GGGGGG GGGGG G G GGG+ GGGG G+ + +P
Sbjct: 280 GQEGYFGGGGE---GGGGGGGDGGGGGGDGHGSGGGGGE---GDGGGGG----GSPQVSP 429
Query: 62 QGY 64
QG+
Sbjct: 430 QGH 438
Score = 34.7 bits (78), Expect = 0.003
Identities = 24/65 (36%), Positives = 24/65 (36%)
Frame = +1
Query: 3 GKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRGAFESNPQ 62
G GC G GGGG G G G G G GGG GGGG G
Sbjct: 214 GLGCPGTYMILGGGGDKGLQFCGQEGYFGGGGEGGGGGGGDGGGGGGDGHGSGGGGGEGD 393
Query: 63 GYFGG 67
G GG
Sbjct: 394 GGGGG 408
>TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-like
protein, partial (57%)
Length = 1141
Score = 50.4 bits (119), Expect = 6e-08
Identities = 28/48 (58%), Positives = 29/48 (60%)
Frame = +3
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGG 49
GG G GG GG GGG G GGGGG + STGG GGG S GGGG
Sbjct: 369 GGYGTGGAGGGYSTGGGYG--TGGGGGGEYSTGGGGGGYS---TGGGG 497
Score = 45.1 bits (105), Expect = 2e-06
Identities = 22/40 (55%), Positives = 22/40 (55%)
Frame = +3
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDS 41
GG GGG G GGGGG T GGGGG GG G DS
Sbjct: 396 GGYSTGGGYGTGGGGGGEYSTGGGGGGYSTGGGGYGNDDS 515
Score = 42.7 bits (99), Expect = 1e-05
Identities = 22/42 (52%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Frame = +3
Query: 2 GGKGCG---GGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGD 40
GG G G GGG GGGGGG + GGGGG + GG G D
Sbjct: 384 GGAGGGYSTGGGYGTGGGGGGEYSTGGGGGGYSTGGGGYGND 509
Score = 40.0 bits (92), Expect = 8e-05
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 14 GGGGGGGGTKGG---GGGSKGSTGGSGGGDSMKAPGGGGSYISRGAFESNPQG 63
GGG G GG GG GGG TGG GGG+ GGGG G + ++ G
Sbjct: 366 GGGYGTGGAGGGYSTGGGY--GTGGGGGGEYSTGGGGGGYSTGGGGYGNDDSG 518
Score = 39.7 bits (91), Expect = 1e-04
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 2 GGKGCGGGGGAK--GGGGGGGGTKGGGGGSKGSTG 34
GG G GGGGG + GGGGGG + GGGG +G
Sbjct: 414 GGYGTGGGGGGEYSTGGGGGGYSTGGGGYGNDDSG 518
Score = 32.0 bits (71), Expect = 0.022
Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Frame = +3
Query: 7 GGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSM-----KAPGGGGSYISRGAFESNP 61
GGGG G T GG G TGG+GGG S GGGG Y + G
Sbjct: 306 GGGGYDSGYNKTAYSTDEPSGGGYG-TGGAGGGYSTGGGYGTGGGGGGEYSTGGGGGGYS 482
Query: 62 QGYFGGLHAADKANK 76
G GG D N+
Sbjct: 483 TG-GGGYGNDDSGNR 524
>TC8210 homologue to PIR|T10586|T10586 small nuclear
ribonucleoprotein-associated protein homolog
F9F13.90 - Arabidopsis thaliana {Arabidopsis
thaliana;}, partial (16%)
Length = 698
Score = 47.8 bits (112), Expect = 4e-07
Identities = 27/50 (54%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -3
Query: 2 GGKGCGGGGGA-KGGGGGGGGTKGGGGGSKGSTG-GSGGGDSMKAPGGGG 49
GG G G GGA G GGGG G GGG G G G GGG + PGGGG
Sbjct: 252 GGGGMPGRGGA*TGAPPGGGGIPGRGGGGPGIPGRGGGGGPLIICPGGGG 103
Score = 35.0 bits (79), Expect = 0.003
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -3
Query: 7 GGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRG 55
GGG +GGGG G +GGGGG G GG + GG Y G
Sbjct: 198 GGGIPGRGGGGPGIPGRGGGGGPLIICPGGGGPIGLCPNCGGTPYCGGG 52
Score = 26.6 bits (57), Expect = 0.92
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Frame = -3
Query: 2 GGKG----CGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAP 45
GG G C GGGG G GGT GGG G GG P
Sbjct: 144 GGGGPLIICPGGGGPIGLCPNCGGTPYCGGGPPGLGAKLPGGIGCGGP 1
>AV773560
Length = 438
Score = 47.8 bits (112), Expect = 4e-07
Identities = 26/49 (53%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 1 MGGKGCGGGGGA-KGGGGGGGGTKGGGGGSKGSTG-GSGGGDSMKAPGG 47
+GG G GGGGA G GGGG G GGG G G G GGG + PGG
Sbjct: 291 LGGGGMPGGGGA*TGAPAGGGGIPGRGGGGPGIPGRGGGGGPLIICPGG 437
Score = 35.8 bits (81), Expect = 0.002
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +3
Query: 8 GGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGG 49
GGGG GGGG G G G G GGG + GGGG
Sbjct: 294 GGGGMP---GGGGA*TGAPAGGGGIPGRGGGGPGIPGRGGGG 410
Score = 28.9 bits (63), Expect = 0.19
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = +3
Query: 18 GGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRGAFESNPQGYFGG 67
GGGG GGGG G AP GGG RG G GG
Sbjct: 294 GGGGMPGGGGA*TG------------APAGGGGIPGRGGGGPGIPGRGGG 407
>TC8209 homologue to PIR|T10586|T10586 small nuclear
ribonucleoprotein-associated protein homolog
F9F13.90 - Arabidopsis thaliana {Arabidopsis
thaliana;}, partial (19%)
Length = 635
Score = 47.8 bits (112), Expect = 4e-07
Identities = 27/50 (54%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -2
Query: 2 GGKGCGGGGGA-KGGGGGGGGTKGGGGGSKGSTG-GSGGGDSMKAPGGGG 49
GG G G GGA G GGGG G GGG G G G GGG + PGGGG
Sbjct: 214 GGGGMPGRGGA*TGAPPGGGGIPGRGGGGPGIPGRGGGGGPLIICPGGGG 65
Score = 35.0 bits (79), Expect = 0.003
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -2
Query: 7 GGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRG 55
GGG +GGGG G +GGGGG G GG + GG Y G
Sbjct: 160 GGGIPGRGGGGPGIPGRGGGGGPLIICPGGGGPIGLCPNCGGTPYCGGG 14
Score = 25.4 bits (54), Expect = 2.0
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Frame = -2
Query: 2 GGKG----CGGGGGAKGGGGGGGGTKGGGGGSKG 31
GG G C GGGG G GGT GGG G
Sbjct: 106 GGGGPLIICPGGGGPIGLCPNCGGTPYCGGGPPG 5
>AU251550
Length = 329
Score = 46.6 bits (109), Expect = 9e-07
Identities = 34/89 (38%), Positives = 36/89 (40%), Gaps = 27/89 (30%)
Frame = -3
Query: 2 GGKGCGGGGGAKGGGGGG-----------GGTKGGGG-----------GSKGSTGGSGGG 39
G GCGG GG G GGGG GG GGGG G+ GS GG GGG
Sbjct: 315 GPGGCGGCGGPGGPGGGGG**NMAGGGGDGGPCGGGGW*CPNGGGGGAGA*GSRGGPGGG 136
Query: 40 -----DSMKAPGGGGSYISRGAFESNPQG 63
PGGGG + G P G
Sbjct: 135 GL**PGGCGGPGGGGLW*PGGGGPGGPGG 49
Score = 40.8 bits (94), Expect = 5e-05
Identities = 29/68 (42%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = -3
Query: 7 GGGGGAKG-GGGGGGGTKGGGGG-----SKGSTGGSGGGDSMKAPGGGGSYISRGAFESN 60
GGG G G GG GG G GGGGG G GG GG P GGG
Sbjct: 327 GGGPGPGGCGGCGGPGGPGGGGG**NMAGGGGDGGPCGGGGW*CPNGGGGGAGA*GSRGG 148
Query: 61 PQGYFGGL 68
P G GGL
Sbjct: 147 PGG--GGL 130
Score = 37.7 bits (86), Expect = 4e-04
Identities = 24/52 (46%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 2 GGKGCGGGGGAKGGGGGG----GGTKGGGGGSKGSTGGSGGGDSMKAPGGGG 49
GG G G G G GGGG GG G GGG GG G G PGG G
Sbjct: 186 GGGGAGA*GSRGGPGGGGL**PGGCGGPGGGGLW*PGGGGPG----GPGGPG 43
Score = 35.8 bits (81), Expect = 0.002
Identities = 21/48 (43%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Frame = -3
Query: 2 GGKGCGGGGGAKGGGG----------GGGGTKGGGGGSKGSTGGSGGG 39
GG G G G GGGG GGGG GGG G GG G G
Sbjct: 180 GGAGA*GSRGGPGGGGL**PGGCGGPGGGGLW*PGGGGPGGPGGPGCG 37
Score = 33.5 bits (75), Expect = 0.008
Identities = 20/42 (47%), Positives = 21/42 (49%), Gaps = 4/42 (9%)
Frame = -3
Query: 5 GCGGGG----GAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSM 42
G GGGG G GG GGGG GGGG G G GG +
Sbjct: 150 GPGGGGL**PGGCGGPGGGGLW*PGGGGPGGPGGPGCGGQCL 25
>AU251973
Length = 205
Score = 45.8 bits (107), Expect = 1e-06
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -2
Query: 7 GGGGGAK---GGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRG 55
GGGGG + GGGGG GGGGG + GG GG + + GGG Y+ G
Sbjct: 204 GGGGGDEYLYGGGGGDEYLYGGGGGDEYLYGGGGGDEYL*GGGGGDEYLYGG 49
Score = 45.1 bits (105), Expect = 2e-06
Identities = 23/49 (46%), Positives = 28/49 (56%), Gaps = 3/49 (6%)
Frame = -2
Query: 7 GGGGGAK---GGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYI 52
GGGGG + GGGGG GGGGG + GG GG + + GGG Y+
Sbjct: 174 GGGGGDEYLYGGGGGDEYLYGGGGGDEYL*GGGGGDEYLYGGGGGDEYL 28
Score = 43.9 bits (102), Expect = 6e-06
Identities = 23/48 (47%), Positives = 28/48 (57%), Gaps = 3/48 (6%)
Frame = -2
Query: 7 GGGGGAKGGGGGGGGTK---GGGGGSKGSTGGSGGGDSMKAPGGGGSY 51
GGGGG + GGGGG + GGGGG + GG GG + + GGG Y
Sbjct: 144 GGGGGDEYLYGGGGGDEYL*GGGGGDEYLYGGGGGDEYL*GGGGGDEY 1
Score = 38.9 bits (89), Expect = 2e-04
Identities = 24/54 (44%), Positives = 26/54 (47%)
Frame = -2
Query: 14 GGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRGAFESNPQGYFGG 67
GGGGG GGGGG + GG GGGD GGGG G + Y GG
Sbjct: 204 GGGGGDEYLYGGGGGDEYLYGG-GGGDEYLYGGGGGDEYL*GGGGGDEYLYGGG 46
>CN825698
Length = 704
Score = 45.8 bits (107), Expect = 1e-06
Identities = 21/43 (48%), Positives = 24/43 (54%)
Frame = -1
Query: 5 GCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGG 47
G GG ++GGG GGG GGGGG + G GGGD GG
Sbjct: 206 GGGGRSESEGGGSDGGGGGGGGGGGAEAEDGDGGGDLSSESGG 78
Score = 38.9 bits (89), Expect = 2e-04
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = -1
Query: 17 GGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGG 49
GGGG ++ GGGS G GG GGG +A G G
Sbjct: 206 GGGGRSESEGGGSDGGGGGGGGGGGAEAEDGDG 108
Score = 38.5 bits (88), Expect = 2e-04
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 7 GGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSY 51
GG G GGGGGGGG + G G GG M + G G++
Sbjct: 176 GGSDGGGGGGGGGGGAEAEDGDGGGDLSSESGGALMTSAIGIGNW 42
Score = 37.7 bits (86), Expect = 4e-04
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = -1
Query: 3 GKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGG 35
G G GGGG GGGGG G GGG S G
Sbjct: 179 GGGSDGGGGGGGGGGGAEAEDGDGGGDLSSESG 81
Score = 37.4 bits (85), Expect = 5e-04
Identities = 17/41 (41%), Positives = 21/41 (50%)
Frame = -1
Query: 13 KGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYIS 53
+ GGGG ++GGG G GG GGG + GGG S
Sbjct: 212 RAGGGGRSESEGGGSDGGGGGGGGGGGAEAEDGDGGGDLSS 90
Score = 35.4 bits (80), Expect = 0.002
Identities = 19/45 (42%), Positives = 21/45 (46%)
Frame = -1
Query: 4 KGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGG 48
+G G GG GGGGGGG G G + SGG A G G
Sbjct: 182 EGGGSDGGGGGGGGGGGAEAEDGDGGGDLSSESGGALMTSAIGIG 48
Score = 33.5 bits (75), Expect = 0.008
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -1
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGD 40
GG G GGGGGA+ G GGG G T G G+
Sbjct: 161 GGGGGGGGGGAEAEDGDGGGDLSSESGGALMTSAIGIGN 45
Score = 31.6 bits (70), Expect = 0.029
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSM 42
GG G GGG A+ G GGG + GG S G G +++
Sbjct: 155 GGGGGGGGAEAEDGDGGGDLSSESGGALMTSAIGIGNWETL 33
Score = 29.3 bits (64), Expect = 0.14
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -1
Query: 9 GGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRG 55
GG +K + GGGG S GG G GGGG+ G
Sbjct: 254 GGRSKSRSSRLSLLRAGGGGRSESEGGGSDGGGGGGGGGGGAEAEDG 114
>TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precursor,
partial (43%)
Length = 1038
Score = 44.3 bits (103), Expect = 4e-06
Identities = 21/41 (51%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Frame = -1
Query: 1 MGGKGCGGGGGAKGGGGG--GGGTKGGGGGSKGSTGGSGGG 39
+ G G GGG GGGG GGG KGGG G G+GGG
Sbjct: 507 VAGTGVSAGGGVAAGGGGVAGGGEKGGGEAGGGVLAGAGGG 385
Score = 42.7 bits (99), Expect = 1e-05
Identities = 27/58 (46%), Positives = 29/58 (49%), Gaps = 10/58 (17%)
Frame = -1
Query: 2 GGKGCGGGG----GAKGGGGGGGGTKGGGGGSKGSTGG---SGGGDSMKAPG---GGG 49
GG GGGG G KGGG GGG G GG TGG +GGG+ G GGG
Sbjct: 480 GGVAAGGGGVAGGGEKGGGEAGGGVLAGAGGGVD*TGGGEDTGGGED*AGGGVDAGGG 307
Score = 38.9 bits (89), Expect = 2e-04
Identities = 22/49 (44%), Positives = 26/49 (52%), Gaps = 3/49 (6%)
Frame = -1
Query: 3 GKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGG---SGGGDSMKAPGGG 48
G G GGG GGG GG + GGG G+ GG +GGG+ GGG
Sbjct: 483 GGGVAAGGGGVAGGGEKGGGEAGGGVLAGAGGGVD*TGGGED---TGGG 346
Score = 35.8 bits (81), Expect = 0.002
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Frame = -1
Query: 3 GKGCGGG------GGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRG 55
G G G G GA G G G GGG + G G +GGG+ GGG G
Sbjct: 567 GAGAGAGDLLFTLAGAGAGEVAGTGVSAGGGVAAGGGGVAGGGEKGGGEAGGGVLAGAG 391
Score = 35.8 bits (81), Expect = 0.002
Identities = 21/51 (41%), Positives = 23/51 (44%), Gaps = 3/51 (5%)
Frame = -1
Query: 1 MGGKGCGGGGGAKGGGGGGGGTKGG---GGGSKGSTGGSGGGDSMKAPGGG 48
+ G G G G GGG GG GGG KG GG GG + GGG
Sbjct: 531 LAGAGAGEVAGTGVSAGGGVAAGGGGVAGGGEKG--GGEAGGGVLAGAGGG 385
Score = 32.3 bits (72), Expect = 0.017
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -1
Query: 2 GGKGCGGGGGAKGGG-GGGGGTKGGGGGSKGSTGG---SGGGDSMKAPGGGGSYI 52
GG+ GGG GGG GGG GGG + GG + GG + GG G +
Sbjct: 369 GGEDTGGGED*AGGGVDAGGGED*TGGGED*AGGGED*AAGG*GVVGVGGAGEVV 205
Score = 32.0 bits (71), Expect = 0.022
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -1
Query: 1 MGGKGCGGGGGAKGG--GGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGG 47
+ G G GGG A GG G GGG GGG G G + A GG
Sbjct: 453 VAGGGEKGGGEAGGGVLAGAGGGVD*TGGGEDTGGGED*AGGGVDAGGG 307
Score = 31.6 bits (70), Expect = 0.029
Identities = 26/59 (44%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Frame = -1
Query: 2 GGKGCGGGGGAKGGGGG---GGGTK--GGG---GGSKGSTGG----SGGGDSMKAPGGG 48
GG G GGG GGG GGG GGG GG + TGG +GGG+ A G G
Sbjct: 414 GGVLAGAGGGVD*TGGGEDTGGGED*AGGGVDAGGGED*TGGGED*AGGGED*AAGG*G 238
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 44.3 bits (103), Expect = 4e-06
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Frame = -1
Query: 7 GGGGGAKGG--------GGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRGAFE 58
GGG G +GG GG GGG GGGG G G G G + GG Y RG
Sbjct: 368 GGGPGPQGGRGYGGPPQGGRGGGYGGGGGPGYGGGGRGGHGVPQQQYGGPPEYQGRGRGG 189
Query: 59 SNPQGYFGG 67
+ QG GG
Sbjct: 188 PSQQGGRGG 162
Score = 43.5 bits (101), Expect = 7e-06
Identities = 29/76 (38%), Positives = 32/76 (41%), Gaps = 17/76 (22%)
Frame = -1
Query: 2 GGKGCGGGGGAKGGGG-----------------GGGGTKGGGGGSKGSTGGSGGGDSMKA 44
GG G G GGG +GG G GG +GG GG G GG GGG
Sbjct: 293 GGGGPGYGGGGRGGHGVPQQQYGGPPEYQGRGRGGPSQQGGRGGYSGGGGGYGGGGGR-- 120
Query: 45 PGGGGSYISRGAFESN 60
GGGG RG S+
Sbjct: 119 -GGGGMGSGRGVSPSH 75
Score = 42.0 bits (97), Expect = 2e-05
Identities = 25/49 (51%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 3 GKGCGGGG--GAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGG 49
G+G GG G +GG GGGG GGGGG G GSG G S P GG
Sbjct: 206 GRGRGGPSQQGGRGGYSGGGGGYGGGGGRGGGGMGSGRGVS---PSHGG 69
Score = 40.4 bits (93), Expect = 6e-05
Identities = 22/44 (50%), Positives = 24/44 (54%)
Frame = -1
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAP 45
GG+G GGG GG GGGGG GGG GS S GG + P
Sbjct: 176 GGRGGYSGGG--GGYGGGGGRGGGGMGSGRGVSPSHGGPPSRPP 51
Score = 37.4 bits (85), Expect = 5e-04
Identities = 27/74 (36%), Positives = 32/74 (42%), Gaps = 8/74 (10%)
Frame = -1
Query: 2 GGKGCGG-------GGGAKGGGGG-GGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYIS 53
GG+G GG GG GGG G GGG +GG G + GG + GG
Sbjct: 347 GGRGYGGPPQGGRGGGYGGGGGPGYGGGGRGGHGVPQQQYGGPPEYQG-RGRGGPSQQGG 171
Query: 54 RGAFESNPQGYFGG 67
RG + GY GG
Sbjct: 170 RGGYSGGGGGYGGG 129
Score = 37.0 bits (84), Expect = 7e-04
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -1
Query: 12 AKGGGGGGGGTKGG---GGGSKGSTGGSGGGDSMKAPGGGGSYISRGAFESNPQGYFGG 67
A GGGG G +GG GG +G GG GG GGGG RG PQ +GG
Sbjct: 383 AAAPGGGGPGPQGGRGYGGPPQGGRGGGYGGGGGPGYGGGG----RGG-HGVPQQQYGG 222
>AV427333
Length = 387
Score = 43.9 bits (102), Expect = 6e-06
Identities = 27/51 (52%), Positives = 29/51 (55%), Gaps = 3/51 (5%)
Frame = -3
Query: 2 GGKGCGGGGGAKGGGGGGGGTK---GGGGGSKGSTGGSGGGDSMKAPGGGG 49
GG+GC GGGA GGGG K G GGG KG GG GG + GGGG
Sbjct: 226 GGEGCPRGGGANE*EGGGGDLK*WEGVGGGLKGWEGGVGGL*GWE--GGGG 80
Score = 43.5 bits (101), Expect = 7e-06
Identities = 30/73 (41%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = -3
Query: 2 GGKGCGGGGGAKGGG------GGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRG 55
G G GGGGG GG G GGG GGGG G G GG D GGG RG
Sbjct: 364 GEGGSGGGGGRTCGGGVIG*CGDGGGRTCGGGGVNG*DDGGGGDD------GGGEGCPRG 203
Query: 56 AFESNPQGYFGGL 68
+ +G G L
Sbjct: 202 GGANE*EGGGGDL 164
>TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (Fibrillarin
2) (AtFib2), partial (85%)
Length = 1116
Score = 43.1 bits (100), Expect = 9e-06
Identities = 27/55 (49%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 3 GKGCGGGGGAKGGGG----GGGGTKGGGGGSKGSTGGSGG-GDSMKAPGGGGSYI 52
G+G G GGG GG G GG +GGGGG G GG GG G MK GGS +
Sbjct: 91 GRGRGDGGGRGGGRGTPFKARGGGRGGGGGRGGRGGGRGGRGGGMK----GGSRV 243
Score = 42.4 bits (98), Expect = 2e-05
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = +1
Query: 4 KGCGGGGGAKGGGG-----GGGGTKGGGGGS--KGSTGGSGGGDSMKAPGGG 48
+G GGGGG +G G G GG +GGG G+ K GG GGG GGG
Sbjct: 46 RGRGGGGGFRGRGDRGRGRGDGGGRGGGRGTPFKARGGGRGGGGGRGGRGGG 201
Score = 38.9 bits (89), Expect = 2e-04
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Frame = +1
Query: 3 GKGCGGG-GGAKG----------GGGGGGGTKGGGGGSKGSTGGSGGGDS--MKAPGGGG 49
G+G GGG GG +G GGGGG G +GGG G +G GG GG ++ G
Sbjct: 97 GRGDGGGRGGGRGTPFKARGGGRGGGGGRGGRGGGRGGRG--GGMKGGSRVVVEPHRHEG 270
Query: 50 SYISRGAFE 58
+I++G E
Sbjct: 271 IFIAKGGKE 297
>CB827825
Length = 398
Score = 43.1 bits (100), Expect = 9e-06
Identities = 22/36 (61%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 3 GKGCGGGGGAKGGGGGGGGTKG-GGGGSKGSTGGSG 37
G G G GGGA G G G GG G GGGG G GGSG
Sbjct: 61 GYGYGTGGGASGSGYGFGGPDGSGGGGFSGENGGSG 168
Score = 33.5 bits (75), Expect = 0.008
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +1
Query: 11 GAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGS 50
G+ G G GGG G G G G G GGG S + G G S
Sbjct: 55 GSGYGYGTGGGASGSGYGFGGPDGSGGGGFSGENGGSGRS 174
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 43.1 bits (100), Expect = 9e-06
Identities = 24/49 (48%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
Frame = -3
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGG--GGGSKGSTGGSGGGDSMKAPGGG 48
GG G GGGGG + G GGGGT GG G G G G G G GG
Sbjct: 281 GGGGGGGGGGRRSRGSGGGGTNGGRRGRGKGGKRVGRG*GSRE*CRQGG 135
Score = 42.7 bits (99), Expect = 1e-05
Identities = 25/53 (47%), Positives = 30/53 (56%)
Frame = -3
Query: 3 GKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISRG 55
G+G GGGG GGGGGG ++G GGG G+ GG G G GG + RG
Sbjct: 296 GRGRSGGGG--GGGGGGRRSRGSGGG--GTNGGRRG------RGKGGKRVGRG 168
Score = 30.8 bits (68), Expect = 0.049
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Frame = -3
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGG------GGSKGSTGGSGGGDSMKAPGGGGSYISRG 55
G + C GG +G GG + G G + GG GGG ++ G GG + G
Sbjct: 389 GRRRCSRGGRGRGSIWRRGGWRRRGRSRWR*GRGRSGGGGGGGGGGRRSRGSGGGGTNGG 210
Score = 24.3 bits (51), Expect = 4.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 5 GCGGGGGAKGGGGGGGGTKGGGG 27
G GGG + G GGGG GGGG
Sbjct: 133 GNGGGRLLRWFGDGGGG--GGGG 71
Score = 23.9 bits (50), Expect = 6.0
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 4 KGCGGGGGAKGGGGGGGGTKGGGGG 28
+G GGG G GGG GGGGG
Sbjct: 139 EGGNGGGRLLRWFGDGGG--GGGGG 71
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 43.1 bits (100), Expect = 9e-06
Identities = 29/73 (39%), Positives = 31/73 (41%), Gaps = 6/73 (8%)
Frame = -2
Query: 1 MGGKGCGGGGGAKGGGGGGGGTKGGGGGSKGST----GGSGGGDSMKAPGGGGSYISRGA 56
+GG GG G KGG GGGG GGGG G T G G G G G I+ G
Sbjct: 824 IGGLPGGGNNGGKGGKNGGGGGGGGGGVKPGITIGGKGNKGEGGCFDGGGWNGLGINGGG 645
Query: 57 FES--NPQGYFGG 67
N G GG
Sbjct: 644 LGGG*NGLGISGG 606
Score = 39.3 bits (90), Expect = 1e-04
Identities = 22/47 (46%), Positives = 24/47 (50%)
Frame = -2
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGG 48
G GC GGG G G GGG GG G S GG GG + + GGG
Sbjct: 704 GEGGCFDGGGWNGLGINGGGLGGG*NGLGISGGGLGG*NGLGKSGGG 564
Score = 37.4 bits (85), Expect = 5e-04
Identities = 23/54 (42%), Positives = 26/54 (47%), Gaps = 5/54 (9%)
Frame = -2
Query: 1 MGGKGCGGGGGAKGGGGGGG-----GTKGGGGGSKGSTGGSGGGDSMKAPGGGG 49
+GGKG G GG GGG G G GGG G +GG GG + GGG
Sbjct: 725 IGGKGNKGEGGCFDGGGWNGLGINGGGLGGG*NGLGISGGGLGG*NGLGKSGGG 564
Score = 35.0 bits (79), Expect = 0.003
Identities = 27/59 (45%), Positives = 29/59 (48%), Gaps = 10/59 (16%)
Frame = -2
Query: 1 MGGKGCGGGGGAKG----GGGGGG----GTKGGGGGSKGSTGGSGGGDSMKAPG--GGG 49
+G G G GGG G GGG GG G GGG G +G SGGG K G GGG
Sbjct: 665 LGINGGGLGGG*NGLGISGGGLGG*NGLGKSGGGLGGWNGSGKSGGGLG*KGLGIRGGG 489
Score = 33.5 bits (75), Expect = 0.008
Identities = 25/71 (35%), Positives = 32/71 (44%), Gaps = 9/71 (12%)
Frame = -2
Query: 2 GGKGCGGGGGAKGGGGG--GGGTKGGGGGSKGSTGG-------SGGGDSMKAPGGGGSYI 52
GG G G G GGG G G G +GGG G GG +GG + + GGG + I
Sbjct: 569 GGLGGWNGSGKSGGGLG*KGLGIRGGG*NGLGINGGG*KGLGTNGG*NGLGIRGGGKNGI 390
Query: 53 SRGAFESNPQG 63
+S+ G
Sbjct: 389 GGKKKKSSGSG 357
Score = 33.1 bits (74), Expect = 0.010
Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -2
Query: 2 GGKGCGGGGGAKGGGGGG---GGTKGGGGGSKGSTGGSGGGDSMKAPGGG 48
GG G G G GGG GG G GGG G KG GG + + GGG
Sbjct: 608 GGLGG*NGLGKSGGGLGGWNGSGKSGGGLG*KGLGIRGGG*NGLGINGGG 459
>TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (29%)
Length = 576
Score = 42.4 bits (98), Expect = 2e-05
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -2
Query: 2 GGKGCGG-----GGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGG 47
GG+G G G GA G GGG + GGGG G GG G GD + GG
Sbjct: 563 GGEGLDGVGDFDGDGADGEAVGGGEGEAGGGGESGDGGGGGEGDFGRVWGG 411
Score = 35.8 bits (81), Expect = 0.002
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 3 GKGCGGG--GGAKGGGGGGGGTKGGGGGSKGSTGGSGGGD 40
G G G GG +G GGGG + GGGG +G G GG+
Sbjct: 527 GDGADGEAVGGGEGEAGGGGESGDGGGGGEGDFGRVWGGE 408
Score = 30.4 bits (67), Expect = 0.064
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 4/51 (7%)
Frame = -2
Query: 2 GGKGCGGGGGAKGGGGGGGGT----KGGGGGSKGSTGGSGGGDSMKAPGGG 48
GG+G GGGG + G GGGGG + GG + G+ ++ GG
Sbjct: 497 GGEGEAGGGG-ESGDGGGGGEGDFGRVWGGEEEAEVAGAEEVGGVRVVSGG 348
Score = 26.2 bits (56), Expect = 1.2
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 18 GGGGTKGGGG-GSKGSTGGSGGGDSMKAPGGGGSYISRGAFESNPQGYFGGLHAADKA 74
GG G G G G+ G + GG +A GGG S G E + +GG A+ A
Sbjct: 563 GGEGLDGVGDFDGDGADGEAVGGGEGEAGGGGESGDGGGGGEGDFGRVWGGEEEAEVA 390
>TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-associated
channel homolog (AT3g46740/T6H20_230), partial (10%)
Length = 469
Score = 42.4 bits (98), Expect = 2e-05
Identities = 23/40 (57%), Positives = 24/40 (59%)
Frame = +3
Query: 15 GGGGGGGTKGGGGGSKGSTGGSGGGDSMKAPGGGGSYISR 54
GGGGGGGT GGGGG G G GGGD G G + SR
Sbjct: 216 GGGGGGGTTGGGGG--GGWFGGGGGD------GNGGFWSR 311
Score = 42.0 bits (97), Expect = 2e-05
Identities = 18/27 (66%), Positives = 18/27 (66%)
Frame = +3
Query: 5 GCGGGGGAKGGGGGGGGTKGGGGGSKG 31
G GGGGG GGGGGGG GGGG G
Sbjct: 216 GGGGGGGTTGGGGGGGWFGGGGGDGNG 296
Score = 37.7 bits (86), Expect = 4e-04
Identities = 17/28 (60%), Positives = 18/28 (63%)
Frame = +3
Query: 7 GGGGGAKGGGGGGGGTKGGGGGSKGSTG 34
GGGGG GGGGGG GGGG G+ G
Sbjct: 216 GGGGGGGTTGGGGGGGWFGGGGGDGNGG 299
Score = 37.4 bits (85), Expect = 5e-04
Identities = 20/33 (60%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 8 GGGGAKG--GGGGGGGTKGGGGGSKGSTGGSGG 38
GGGG G GGGGGGG GGGGG G+GG
Sbjct: 216 GGGGGGGTTGGGGGGGWFGGGGGD-----GNGG 299
Score = 35.4 bits (80), Expect = 0.002
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSGGGD 40
GG G GGGG G GGGGG GG S+ T + D
Sbjct: 225 GGGGTTGGGGGGGWFGGGGGDGNGGFWSRLLTPAAANAD 341
Score = 27.7 bits (60), Expect = 0.41
Identities = 17/44 (38%), Positives = 22/44 (49%)
Frame = +3
Query: 32 STGGSGGGDSMKAPGGGGSYISRGAFESNPQGYFGGLHAADKAN 75
STGG GGG + GGGG + G + N G++ L AN
Sbjct: 210 STGGGGGGGT-TGGGGGGGWFGGGGGDGN-GGFWSRLLTPAAAN 335
Score = 26.9 bits (58), Expect = 0.70
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 3 GKGCGGGGGAKGGGGGGGGTKGGG 26
G+ G GG + GGGGGG GG
Sbjct: 212 GEEGGERGGVEDDGGGGGGECDGG 141
Score = 26.6 bits (57), Expect = 0.92
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGG 28
G +G GG GGGGGG GG G
Sbjct: 212 GEEGGERGGVEDDGGGGGGECDGGRDG 132
Score = 26.2 bits (56), Expect = 1.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -3
Query: 2 GGKGCGGGGGAKGGGGGGGGTKGGGGGSKGSTGGSG 37
G G +GG GG GGGGG + G G
Sbjct: 239 GASTSASARGEEGGERGGVEDDGGGGGGECDGGRDG 132
Score = 25.0 bits (53), Expect = 2.7
Identities = 19/66 (28%), Positives = 26/66 (38%), Gaps = 5/66 (7%)
Frame = -3
Query: 14 GGGGGGGGTKGGGGGSKGST---GGSGGGDSMKAPGGGGSYISRGAFESNPQGY--FGGL 68
GG +G GG +G GG GGG+ G +R F +G+ G
Sbjct: 242 GGASTSASARGEEGGERGGVEDDGGGGGGECDGGRDGFEE*RAREFFVGRGRGFVTVDG* 63
Query: 69 HAADKA 74
H A+ A
Sbjct: 62 HLAEVA 45
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.306 0.142 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,178,568
Number of Sequences: 28460
Number of extensions: 28649
Number of successful extensions: 6332
Number of sequences better than 10.0: 856
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3597
length of query: 76
length of database: 4,897,600
effective HSP length: 52
effective length of query: 24
effective length of database: 3,417,680
effective search space: 82024320
effective search space used: 82024320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 48 (23.1 bits)
Medicago: description of AC144731.11