TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144731.10 + phase: 0 /pseudo
         (222 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8466                                                                241  9e-65
BP083970                                                               28  0.96
TC14275 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (...    28  1.3
AI967639                                                               27  2.8
BP033529                                                               27  3.7
TC15716 similar to UP|O78327 (O78327) Transketolase 1 , partial ...    27  3.7
TC12882 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate ...    26  4.8
TC11651                                                                26  4.8
TC9946 similar to UP|Q9LLM3 (Q9LLM3) MTD1, partial (42%)               26  6.2
TC19160 similar to UP|Q9LPZ8 (Q9LPZ8) T23J18.3, partial (15%)          26  6.2
TC12189 similar to UP|Q9FKV6 (Q9FKV6) Eukaryotic translation ini...    26  6.2
TC17572 similar to UP|O80910 (O80910) At2g38410 protein, partial...    25  8.2

>TC8466 
          Length = 1265

 Score =  241 bits (614), Expect = 9e-65
 Identities = 136/236 (57%), Positives = 157/236 (65%), Gaps = 14/236 (5%)
 Frame = +3

Query: 1   MKFLECAPLDRLSDFLSNLNLGERTIKGCIEAYSCKHSGADKKLSISLSNEILDYLGKSS 60
           M FLECAPLDRL+DFL +LNLGERTIKGC+EAYSCKH+G DKKLSISL NEILDYLGKSS
Sbjct: 177 MMFLECAPLDRLNDFLCHLNLGERTIKGCLEAYSCKHAGTDKKLSISLDNEILDYLGKSS 356

Query: 61  DNDSPSPVDSLSSPVDSLSARTSP--------AGRHWFT*FLPSITCIQIMISAQLKLTS 112
           D+DS       SSP D L  RTS         A  H +  +  S       + A    T 
Sbjct: 357 DSDS-------SSPHDPLITRTSRKTLVYLVLALYHMYPDYDFSA------VKAHQFFTE 497

Query: 113 FSQRNHGTVLSRFLKPTC------LKPQSLLDALFKAVDEVVSLDDCEIYGYLPDSEADP 166
            S  +   V   ++          ++  SLLD L KA+DEVV L DCEIYGY+PD EADP
Sbjct: 498 ESWDSFKQVFDSYMFEASKEWDETVEGLSLLDTLLKAIDEVVKLADCEIYGYVPDYEADP 677

Query: 167 LPERGAIWSFNFLFYNRKLKRIVTFRLSCFSNLIADGFSLDEICDEYDEEIFADMD 222
           L + GA+WSFNFLFYNRKLKR+VTF  SCFSNLI DGF  DE  ++YDE+IFADMD
Sbjct: 678 LLDSGAMWSFNFLFYNRKLKRVVTFHFSCFSNLITDGFLADEFHNDYDEQIFADMD 845


>BP083970 
          Length = 375

 Score = 28.5 bits (62), Expect = 0.96
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = -3

Query: 135 SLLDALFKAVDEVVSLDDCEIYGYLPDSEADPLPERGAIWSFNFLFYNRKLKRIVT--FR 192
           S+L+ +   + EV  L    IY    +SEAD L +RGAI S + +++N  +  + +  FR
Sbjct: 286 SMLNPIDHWLVEVNCLKVSHIYREA-NSEADKLAKRGAIHSKDLVYFNESIAWMGS*WFR 110

Query: 193 LSCFS 197
           L  FS
Sbjct: 109 LFVFS 95


>TC14275 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (25%)
          Length = 562

 Score = 28.1 bits (61), Expect = 1.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 37  HSGADKKLSISLSNEILDYLGKSSDNDSPSPVDSLSSPVDSLSARTSPAG 86
           H    +KLSI+++         SS + SPSP  S + P DS +     AG
Sbjct: 214 HCLGGQKLSINVTGGSSTATPPSSASPSPSPSSSTTPPQDSAAGSLGAAG 363


>AI967639 
          Length = 335

 Score = 26.9 bits (58), Expect = 2.8
 Identities = 17/42 (40%), Positives = 24/42 (56%)
 Frame = -1

Query: 44  LSISLSNEILDYLGKSSDNDSPSPVDSLSSPVDSLSARTSPA 85
           LS+SLS+ +L     SS + S S     SSP  S S+ +SP+
Sbjct: 221 LSLSLSSLMLKSSSSSSSSSSSSSSRLYSSP*SSSSSSSSPS 96


>BP033529 
          Length = 299

 Score = 26.6 bits (57), Expect = 3.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 128 PTC-LKPQSLLDALFKAVDEVVSLDDCEIYGYL 159
           P C L+PQ   +  F  +DE+   D C+++GYL
Sbjct: 194 PDCFLRPQL*FNMNFVELDELREKDVCKLWGYL 96


>TC15716 similar to UP|O78327 (O78327) Transketolase 1 , partial (8%)
          Length = 567

 Score = 26.6 bits (57), Expect = 3.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 175 SFNFLFYNRKLKRIVTFRLSCFSNL 199
           SFNF+  +  L  + T R++C SNL
Sbjct: 393 SFNFISSSHPLHDVATLRITCKSNL 319


>TC12882 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate kinase 1
           (Pantothenic acid kinase 1) , partial (8%)
          Length = 647

 Score = 26.2 bits (56), Expect = 4.8
 Identities = 12/38 (31%), Positives = 21/38 (54%)
 Frame = +2

Query: 16  LSNLNLGERTIKGCIEAYSCKHSGADKKLSISLSNEIL 53
           + N  L E+ +KG I    CK+  A+ KL +   ++I+
Sbjct: 149 VKNQRLAEKLVKGNIYDCVCKYEPAN*KLCVQTQSQIM 262


>TC11651 
          Length = 480

 Score = 26.2 bits (56), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = +3

Query: 174 WSFNFLFYNRKLKRIVTFRLSCFS 197
           W F+ L ++  LK IV F LSC +
Sbjct: 303 WLFSILCFSLNLKLIVNFFLSCLA 374


>TC9946 similar to UP|Q9LLM3 (Q9LLM3) MTD1, partial (42%)
          Length = 676

 Score = 25.8 bits (55), Expect = 6.2
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 37  HSGADKKLSISLSNEILDYLGKSSDNDSPSPVDSLSSPVDSLSARTSP 84
           H G   + SISLS   L     ++ +DS S + S  S   S S   SP
Sbjct: 156 HGGGISQRSISLSRSSLALAVAATHSDSSSSITSEDSASSSNSLSPSP 299


>TC19160 similar to UP|Q9LPZ8 (Q9LPZ8) T23J18.3, partial (15%)
          Length = 557

 Score = 25.8 bits (55), Expect = 6.2
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -1

Query: 38  SGADKKLS---ISLSNEILDYLGKSSDNDSPSPVDSLSSPVDSLSARTSPAGRHW 89
           SG+ + L+   + LS     +   SS+   PSP  +L SP    +   +  GR W
Sbjct: 386 SGSARSLAFVEVKLSKSSSSFRRDSSEESPPSPSSALWSPAPQSAP*RTLVGRTW 222


>TC12189 similar to UP|Q9FKV6 (Q9FKV6) Eukaryotic translation initiation
           factor 3 subunit 7, partial (30%)
          Length = 658

 Score = 25.8 bits (55), Expect = 6.2
 Identities = 12/32 (37%), Positives = 16/32 (49%)
 Frame = +1

Query: 56  LGKSSDNDSPSPVDSLSSPVDSLSARTSPAGR 87
           L  S    SP+P  S  SP+   ++ T PA R
Sbjct: 115 LSTSPSPPSPAPTSSAGSPIGPATSTTRPAPR 210


>TC17572 similar to UP|O80910 (O80910) At2g38410 protein, partial (28%)
          Length = 772

 Score = 25.4 bits (54), Expect = 8.2
 Identities = 14/36 (38%), Positives = 22/36 (60%)
 Frame = +2

Query: 45  SISLSNEILDYLGKSSDNDSPSPVDSLSSPVDSLSA 80
           S +LS+E+ DY    +   S SPV+S+S+P    S+
Sbjct: 608 SSTLSSEV-DYSANQTQVKSSSPVESVSTPNSKASS 712


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,008,572
Number of Sequences: 28460
Number of extensions: 56507
Number of successful extensions: 291
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of query: 222
length of database: 4,897,600
effective HSP length: 87
effective length of query: 135
effective length of database: 2,421,580
effective search space: 326913300
effective search space used: 326913300
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)