Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144730.5 + phase: 0 /pseudo
         (146 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP038017                                                               44  1e-05
AV425218                                                               39  3e-04
TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2,...    34  0.012
TC18923 UP|CAE45594 (CAE45594) S-receptor kinase-like protein 1,...    33  0.026
TC18164 similar to GB|AAN33186.1|23452834|AF543710 elongation de...    25  4.1
TC14018 similar to UP|Q43465 (Q43465) Protein kinase 2, partial ...    25  4.1
BI418447                                                               25  5.3
TC17202 similar to UP|Q9FQ10 (Q9FQ10) Sucrose-phosphatase  , par...    25  7.0
AV426189                                                               24  9.1

>BP038017 
          Length = 570

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 26/82 (31%), Positives = 39/82 (46%), Gaps = 1/82 (1%)
 Frame = +2

Query: 2   DSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPK 61
           D+ Y+ N Y++P     GV         G      E E +F W   + R  L++  + P 
Sbjct: 329 DTMYRPNQYQVPFAPFTGVNHHGQNVLFGCALLLDESESSFTW---LFRTWLSAMNDRPP 499

Query: 62  V-IVTDRDMSLMKEVANVFPES 82
           V I TD+D ++   VA VFPE+
Sbjct: 500 VSITTDQDRAIQAAVAQVFPET 565


>AV425218 
          Length = 419

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 28/122 (22%), Positives = 55/122 (44%), Gaps = 1/122 (0%)
 Frame = +2

Query: 13  PMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPKVIVTDRDMSLM 72
           P+  +VGV     +   G    + E  E+FVW+ + L   ++     P+ I+TD   ++ 
Sbjct: 5   PLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCMSGV--PPQGIITDHSEAMK 178

Query: 73  KEVANVFPESYAMNCYFHVQANVKQRCVLDCKYPLGKKDGKE-VKPRDVVNKIMRAWKSM 131
           K +  V P +    C  ++   + Q+ +   +Y   +   +  V    V+++  R WK +
Sbjct: 179 KAIETVLPSTRHRWCLSYIMKKLPQKLLGYAQYESIRHHLQNVVYDAVVIDEFERNWKKI 358

Query: 132 VE 133
           VE
Sbjct: 359 VE 364


>TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2, complete
          Length = 2946

 Score = 33.9 bits (76), Expect = 0.012
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
 Frame = +1

Query: 46   LKMLRKLLTSKMN-------MPKVIVTDRDMSLMKEVANVF---PESYAMNCYFHVQANV 95
            LK    LL  +MN       + ++ + D+  +  K V   +   P  YA++  F ++++V
Sbjct: 2032 LKTSNILLDDEMNPKISDFGLARIFIGDQVEARTKRVMGTYGYMPPEYAVHGSFSIKSDV 2211

Query: 96   KQRCVLDCKYPLGKKDGKEVKPRDVVNKIMRAWKSMVESPTQEL 139
                V+  +   GKK G+   P   +N +  AW+  +E    EL
Sbjct: 2212 FSFGVIVLEIISGKKIGRFYDPHHHLNLLSHAWRLWIEERPLEL 2343


>TC18923 UP|CAE45594 (CAE45594) S-receptor kinase-like protein 1, complete
          Length = 2061

 Score = 32.7 bits (73), Expect = 0.026
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
 Frame = +1

Query: 46   LKMLRKLLTSKMN-------MPKVIVTDRDMSLMKEVANVF---PESYAMNCYFHVQANV 95
            LK    LL ++MN       + ++ + D+  +  K V   +   P  YA++  F ++++V
Sbjct: 1495 LKTSNILLDNEMNPKISDFGLARIFIGDQVEARTKRVMGTYGYMPPEYAVHGSFSIKSDV 1674

Query: 96   KQRCVLDCKYPLGKKDGKEVKPRDVVNKIMRAWKSMVESPTQEL 139
                V+  +   GKK  K   P   +N +  AW+  +E    EL
Sbjct: 1675 FSFGVIVLEIISGKKIRKFYDPHHHLNLLSHAWRLWIEGSPLEL 1806


>TC18164 similar to GB|AAN33186.1|23452834|AF543710 elongation defective 1
           {Arabidopsis thaliana;}, partial (31%)
          Length = 1023

 Score = 25.4 bits (54), Expect = 4.1
 Identities = 22/92 (23%), Positives = 40/92 (42%), Gaps = 6/92 (6%)
 Frame = +1

Query: 40  ENFVW-----VLKMLRKLLTSKMNMPKVIVTD-RDMSLMKEVANVFPESYAMNCYFHVQA 93
           E+ VW      LK+LRK + +++  P VIV   R+  +   V    P     +    + +
Sbjct: 355 EHVVWGDKDLKLKLLRKGILTRIYAPMVIVQSLRESGVFSSVIASAPTLSKESFLQSIDS 534

Query: 94  NVKQRCVLDCKYPLGKKDGKEVKPRDVVNKIM 125
           +   R V     P  +K G+  + +  V K++
Sbjct: 535 SNSSRAVASVSLP-SRKAGRTXESQATVRKVL 627


>TC14018 similar to UP|Q43465 (Q43465) Protein kinase 2, partial (27%)
          Length = 559

 Score = 25.4 bits (54), Expect = 4.1
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +1

Query: 43  VWVLKMLRKLLTSKMNMPKVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQRCVLD 102
           +W+LKM+RKL      M  V +   D  L   +A V+   Y+M+ Y H+   + +RC  D
Sbjct: 328 LWMLKMMRKL------MLVVTMNQCDRCLHW*MACVYKIIYSMH-YLHLSL-LFRRCSKD 483

Query: 103 CKY 105
             Y
Sbjct: 484 IHY 492


>BI418447 
          Length = 443

 Score = 25.0 bits (53), Expect = 5.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 43  VWVLKMLRKLLTSKMNMPKVIVTDRDMSLMK 73
           +WV KML+K L +++ +P+ + T      +K
Sbjct: 167 IWVSKMLQKSLLNRVQLPQSL*TQSHCGKIK 259


>TC17202 similar to UP|Q9FQ10 (Q9FQ10) Sucrose-phosphatase  , partial (28%)
          Length = 655

 Score = 24.6 bits (52), Expect = 7.0
 Identities = 13/48 (27%), Positives = 24/48 (49%)
 Frame = +1

Query: 59  MPKVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQRCVLDCKYP 106
           +P+ +VT   +++M  + N F     +  + HV+ +   R  L CK P
Sbjct: 385 VPQCLVTPFAINVM*SMTN*FQHLNFLKNFHHVKVSYIYRFELHCKSP 528


>AV426189 
          Length = 408

 Score = 24.3 bits (51), Expect = 9.1
 Identities = 10/55 (18%), Positives = 26/55 (47%)
 Frame = +2

Query: 25  LTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPKVIVTDRDMSLMKEVANVF 79
           +TY         ++++  +W  K+L   +   +++ KVI  D D  +  ++  ++
Sbjct: 110 ITYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELY 274


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,276,785
Number of Sequences: 28460
Number of extensions: 25352
Number of successful extensions: 126
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of query: 146
length of database: 4,897,600
effective HSP length: 82
effective length of query: 64
effective length of database: 2,563,880
effective search space: 164088320
effective search space used: 164088320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)


Medicago: description of AC144730.5