TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144729.7 - phase: 0 
         (226 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV421087                                                              103  3e-23
TC9160 similar to UP|Q8H0V0 (Q8H0V0) Isp4 like protein, partial ...    69  9e-13
BI418281                                                               29  0.76
TC19282 similar to UP|Q84XU4 (Q84XU4) Protein disulphide isomera...    28  0.99
TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p...    27  3.8
TC16536 similar to UP|O22477 (O22477) Betaine aldehyde dehydroge...    26  4.9
TC18376 weakly similar to UP|Q8RY35 (Q8RY35) At2g44820/T13E15.17...    26  4.9
TC19422 weakly similar to UP|Q945L7 (Q945L7) AT4g35240/F23E12_20...    26  6.4
BP053584                                                               25  8.4
TC14074 homologue to UP|AAQ08403 (AAQ08403) Methionine synthase,...    25  8.4

>AV421087 
          Length = 387

 Score =  103 bits (256), Expect = 3e-23
 Identities = 56/81 (69%), Positives = 62/81 (76%)
 Frame = +1

Query: 52  SKKFKAVIVRIDSVGGDFHASQSTWEAIRSLASKKPVIASMSDAATSAGYYMAMGAGAIV 111
           SKKFKA I+RIDS GGD  AS   W  IR LA+ KPVIASM+D A S GYYMAMGA AIV
Sbjct: 1   SKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMADVAASGGYYMAMGAQAIV 180

Query: 112 AENLTLTGSIRGTVSQNFNLD 132
           AE+LTLTGSI G V+  FNL+
Sbjct: 181 AESLTLTGSI-GVVTGKFNLE 240


>TC9160 similar to UP|Q8H0V0 (Q8H0V0) Isp4 like protein, partial (53%)
          Length = 1554

 Score = 68.6 bits (166), Expect = 9e-13
 Identities = 29/39 (74%), Positives = 34/39 (86%)
 Frame = +2

Query: 188 MPVISYGFAGMPPATPTNFARWPFTRMIFNYFVFRFHKR 226
           +PVISYGFAGMPPATP+N A W  T MIFN+FVFR+H+R
Sbjct: 893 IPVISYGFAGMPPATPSNIASWLVTGMIFNFFVFRYHQR 1009


>BI418281 
          Length = 494

 Score = 28.9 bits (63), Expect = 0.76
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 84  SKKPVIASMSDAATSAGYYMAMGAGAIVAENLTLTG 119
           SKKPV+A++   A   G  +AMG  A VA   T  G
Sbjct: 341 SKKPVVAAVEGLALGGGLKLAMGCHARVAAPRT*LG 448


>TC19282 similar to UP|Q84XU4 (Q84XU4) Protein disulphide isomerase
           (Fragment), partial (17%)
          Length = 520

 Score = 28.5 bits (62), Expect = 0.99
 Identities = 15/42 (35%), Positives = 22/42 (51%)
 Frame = -3

Query: 81  SLASKKPVIASMSDAATSAGYYMAMGAGAIVAENLTLTGSIR 122
           SLAS+ P+ A  SD+   AG++   G  A    NL    ++R
Sbjct: 263 SLASELPLAAEFSDSEVEAGFWSLNGIEACFLRNL*KATTVR 138


>TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial (85%)
          Length = 1917

 Score = 26.6 bits (57), Expect = 3.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 186  AGMPVISYGFAGMPPATP 203
            +GMP+ S G   MPPATP
Sbjct: 1359 SGMPLTS*GTENMPPATP 1306


>TC16536 similar to UP|O22477 (O22477) Betaine aldehyde dehydrogenase  ,
           partial (71%)
          Length = 1097

 Score = 26.2 bits (56), Expect = 4.9
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 73  QSTWEAIRSLASKKPVIASMSDAATSAGYYMAMGAGAIVAENLTLTGSIRGTVSQN 128
           +S + A  +  SK+P  +SMS AA+S+G+  +      +A NL   G +   +  N
Sbjct: 414 ESNFSARSA*YSKQPATSSMSQAASSSGFPES------IASNLAS*GFLLSNLGSN 265


>TC18376 weakly similar to UP|Q8RY35 (Q8RY35) At2g44820/T13E15.17, partial
           (36%)
          Length = 588

 Score = 26.2 bits (56), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 157 TLGKLDKMKKVAHGRIWTGKDA 178
           TLG   KM K++  RIW GK A
Sbjct: 188 TLGPS*KMSKISATRIWHGKSA 253


>TC19422 weakly similar to UP|Q945L7 (Q945L7) AT4g35240/F23E12_200, partial
           (39%)
          Length = 624

 Score = 25.8 bits (55), Expect = 6.4
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 44  EKIGMVKDSKKFKAVIVRIDSVGGDFHASQSTWEAIRSLASK 85
           EK+ +  D K  K  + R+D  G DF+   +T  +IRSL++K
Sbjct: 226 EKMRVDHDRKCRK--LKRLDERGADFNKVDTTRTSIRSLSTK 345


>BP053584 
          Length = 514

 Score = 25.4 bits (54), Expect = 8.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 199 PPATPTNFARWPFTR 213
           P A P  F  WPFTR
Sbjct: 344 PAAMPNKFITWPFTR 388


>TC14074 homologue to UP|AAQ08403 (AAQ08403) Methionine synthase, partial
            (32%)
          Length = 1107

 Score = 25.4 bits (54), Expect = 8.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -3

Query: 161  LDKMKKVAHGRIWTGKDAASHG-----LVDAGMPVISYGFAGMPPATPTNF 206
            +DK  K   G I+   DA S G     LV++  P+I+YG+  M  A P  +
Sbjct: 1078 VDKWLKSTKGEIYV--DAWSDGTINTLLVNST*PIIAYGYEYMIEAMPQKY 932


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,246,235
Number of Sequences: 28460
Number of extensions: 33267
Number of successful extensions: 168
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of query: 226
length of database: 4,897,600
effective HSP length: 87
effective length of query: 139
effective length of database: 2,421,580
effective search space: 336599620
effective search space used: 336599620
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)