TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144728.5 - phase: 0 
         (497 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12669 similar to UP|Q944A3 (Q944A3) At2g47010/F14M4.16, partia...   430  e-121
CN825408                                                              370  e-103
TC14289 similar to UP|LEU1_SOYBN (Q39891) Probable 2-isopropylma...    29  1.5
TC17337 weakly similar to UP|Q9M548 (Q9M548) Cytosine methyltran...    29  2.0
CB827382                                                               28  4.5
TC7866 homologue to UP|SAHH_CATRO (P35007) Adenosylhomocysteinas...    27  5.9
AI967840                                                               27  7.7
AV779643                                                               27  7.7
BP031619                                                               27  7.7
CN825492                                                               27  7.7
TC17297 similar to GB|AAO64832.1|29028906|BT005897 At2g02080 {Ar...    27  7.7

>TC12669 similar to UP|Q944A3 (Q944A3) At2g47010/F14M4.16, partial (36%)
          Length = 654

 Score =  430 bits (1106), Expect = e-121
 Identities = 191/213 (89%), Positives = 205/213 (95%)
 Frame = +2

Query: 276 ESPNFKVRLTLDVKKGGGSKSQFYLLDMGSCWKNNGAPCDGDVLTDVTRYSEMIINPETP 335
           +SPNFKVRL+LD+KKGGGSKSQFYLLD+GSCWKNNGA CDGDVLTDVTRYSEMIINPETP
Sbjct: 14  QSPNFKVRLSLDIKKGGGSKSQFYLLDIGSCWKNNGAACDGDVLTDVTRYSEMIINPETP 193

Query: 336 AWCSPTGLGNCPPFHITPDNKKIFRNDTANFPYSAYHYYCAPGNAQHLEQPVSTCDPYSN 395
           AWCSPTGLGNCPPFHITPDN+KI+RNDTANFPYSAYH+YCAPGNAQHLE+PVSTCDPYSN
Sbjct: 194 AWCSPTGLGNCPPFHITPDNRKIYRNDTANFPYSAYHFYCAPGNAQHLEKPVSTCDPYSN 373

Query: 396 PQAQEIVQLLPHPIWGEYGYPINKGDGWVGDARTWELDVGGLASRLYFYQDPGTSPAKRI 455
           PQAQEIVQLLPHPIW EYGYP  K DGWVGD RTWELDVGGL+SRLYFYQDPGT PAKR+
Sbjct: 374 PQAQEIVQLLPHPIWAEYGYPTKKDDGWVGDGRTWELDVGGLSSRLYFYQDPGTPPAKRV 553

Query: 456 WTSIDTGTEIFVSDKDEVAEWTISDFDVILIQP 488
           WTSID+GTEIFVSDKDEVAEW++SDFDVI+ QP
Sbjct: 554 WTSIDSGTEIFVSDKDEVAEWSLSDFDVIVTQP 652


>CN825408 
          Length = 675

 Score =  370 bits (949), Expect = e-103
 Identities = 175/228 (76%), Positives = 195/228 (84%)
 Frame = +3

Query: 1   MEKQLQKFFVLSNVMLLCASLVSTTQSQTNVSAVGDPGMQRDGLRVAFEAWNFCNEVGQE 60
           MEK+LQ+ FVL NV++  ASLV TT+  TN SAVGDPGMQRDGLRVAFEAWNFCNEVG+E
Sbjct: 6   MEKKLQRLFVLLNVLVFNASLVFTTK--TNFSAVGDPGMQRDGLRVAFEAWNFCNEVGEE 179

Query: 61  APYMGSPRAAQCFDLSQGSLIHKVTEKDNKLGVGESLPGLRPEDINNIDLYAVQKELYLG 120
           AP+MGSPRAA CFDLS  SLIHKVTE DNKLGVG+SLPGL PEDINN DLYA  KELYLG
Sbjct: 180 APHMGSPRAADCFDLSGSSLIHKVTEADNKLGVGDSLPGLTPEDINNADLYAAHKELYLG 359

Query: 121 SLCEVKDTPRPWQFWMIMLKNGNYDSRSGLCPQDGKRVPPFKPGRFPCFGTGCMNQPILC 180
           SLCEV DTPRPWQFWM+MLKNGNYD+RSGLCP+DGK+VPPF PGRFPCFG GCMNQPI C
Sbjct: 360 SLCEVPDTPRPWQFWMVMLKNGNYDTRSGLCPKDGKKVPPFAPGRFPCFGEGCMNQPIFC 539

Query: 181 HQWTKLEGDVMRGGFNGTYDLDSSCRDSGLDDNNNLSFYEVVWEKKVN 228
           HQ T+L+   MRGGF+G+YDL S C      +++ LS+YEVVWEKKVN
Sbjct: 540 HQQTQLKDGTMRGGFSGSYDLGSDCG----SEHDGLSYYEVVWEKKVN 671


>TC14289 similar to UP|LEU1_SOYBN (Q39891) Probable 2-isopropylmalate synthase
             (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
            (Late nodulin 56) (N-56) , partial (85%)
          Length = 1822

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 128  TPRPWQFWMIMLKNGNYDSRSGLC 151
            T  P ++WMI +  GN+++ SG C
Sbjct: 1607 TTSPTKYWMIRISTGNFNTCSGSC 1536


>TC17337 weakly similar to UP|Q9M548 (Q9M548) Cytosine methyltransferase
           (Modification methylase) (Cytosine-specific
           methyltransferase) , partial (5%)
          Length = 629

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 1/41 (2%)
 Frame = +2

Query: 394 SNPQAQEIVQLLPHPIWGEYGYPINKGDGW-VGDARTWELD 433
           S+PQ QE  QL P P   EYG     G  W + DA T+  D
Sbjct: 521 SSPQPQEQPQLEPDPFSSEYG-----GSSWDISDADTFSDD 628


>CB827382 
          Length = 559

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
 Frame = +1

Query: 203 SSCRDSGLDDNNNLSF-YEVVWEKKVNV 229
           SS R +G+DD + + F YE+ WE   NV
Sbjct: 364 SSSRFNGMDDESMVDFFYEIAWEAWFNV 447


>TC7866 homologue to UP|SAHH_CATRO (P35007) Adenosylhomocysteinase
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) ,
           partial (38%)
          Length = 561

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 233 LFKHKLKTSKKYPWLMLYLR 252
           LFK   K SK  PW ML+LR
Sbjct: 183 LFKLSWKASKSKPWRMLFLR 242


>AI967840 
          Length = 393

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = -1

Query: 291 GGGSKSQFYLLDMGSCWKNNGAPCDGD 317
           GGG   ++ LL +G C  N G  C+GD
Sbjct: 96  GGGLLLRWLLLALGHCDGN*GLECEGD 16


>AV779643 
          Length = 500

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -1

Query: 331 NPETPAWCSPTGLGNCPPFHITPDNKKIFRNDTANFPYSAYHYYCAPGN 379
           NP      + T LG C PF  TP  +   R+    FP + Y +   P +
Sbjct: 485 NPSMVLDMAFTTLGPCVPFQCTP-ARSSSRSSLCTFPLALYQHILPPSH 342


>BP031619 
          Length = 426

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +2

Query: 423 WVGDARTWELDVGGLASRL 441
           WVG  +TWE+ V  +A RL
Sbjct: 251 WVGKGKTWEIRVLSMAQRL 307


>CN825492 
          Length = 640

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 23/51 (44%)
 Frame = +2

Query: 131 PWQFWMIMLKNGNYDSRSGLCPQDGKRVPPFKPGRFPCFGTGCMNQPILCH 181
           PW+   I LK+  ++   G C   GK+ P      F    T  M + ++CH
Sbjct: 473 PWRLIQIQLKDTKHEECQGPCWGSGKKQPVI----FVWLQT*IMMKRLVCH 613


>TC17297 similar to GB|AAO64832.1|29028906|BT005897 At2g02080 {Arabidopsis
           thaliana;}, partial (4%)
          Length = 541

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 371 YHYYCAPGNAQHLEQPVSTCDPYSN 395
           +HY C     QH E P STC    N
Sbjct: 222 HHY*CFSSFLQHPENPTSTCQNLQN 148


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,481,712
Number of Sequences: 28460
Number of extensions: 169403
Number of successful extensions: 776
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of query: 497
length of database: 4,897,600
effective HSP length: 94
effective length of query: 403
effective length of database: 2,222,360
effective search space: 895611080
effective search space used: 895611080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)