TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144728.11 + phase: 0 /pseudo
         (438 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV428268                                                               36  0.014
AV411435                                                               32  0.21
AV418280                                                               32  0.21
TC10037                                                                32  0.27
AV780445                                                               31  0.46
BP076564                                                               30  0.60
AV426428                                                               30  0.79
TC14834 similar to UP|Q8RX56 (Q8RX56) AT5g06970/MOJ9_14, partial...    30  0.79
NP459575 NADH dehydrogenase subunit [Lotus japonicus]                  29  1.3
BP044618                                                               29  1.8
AU089120                                                               28  2.3
BP068806                                                               28  3.9
AV412895                                                               27  5.1
TC9226                                                                 27  6.7
BP034485                                                               27  6.7
TC15080                                                                27  6.7
TC13141 similar to UP|Q9LN64 (Q9LN64) F18O14.6, partial (12%)          27  8.7

>AV428268 
          Length = 429

 Score = 35.8 bits (81), Expect = 0.014
 Identities = 15/40 (37%), Positives = 22/40 (54%)
 Frame = +3

Query: 323 TRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
           T+V L  +GV     C  CS + E  +HL+F CP   ++W
Sbjct: 147 TKVNLNRRGVVISNVCPLCSLDEESTDHLLFSCPIV*RIW 266


>AV411435 
          Length = 426

 Score = 32.0 bits (71), Expect = 0.21
 Identities = 19/90 (21%), Positives = 36/90 (39%)
 Frame = +3

Query: 273 RYVALTVFVLKSWLMFPTSIVRVIGETFGALRSPRKLNT*FGVCVGGCLPTRVLLQDKGV 332
           R V  T F L +     +     +  T    + P+K+ +         +P +  L+ + +
Sbjct: 96  RAVKATQFNLSNLASSSSHPSSFLWHTIWGAQVPKKVRSFLWRAANNAIPVKRNLKRRNM 275

Query: 333 SCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
                C  C+   ED+NH +  C ++  VW
Sbjct: 276 GRDDFCPICNKGPEDINHALLACEWTRAVW 365


>AV418280 
          Length = 398

 Score = 32.0 bits (71), Expect = 0.21
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 338 CASCSHEYEDLNHLMFECPFSIQVWMSAGMWYMCKMRP*IRTLLS-TQFSIYSKTR 392
           C  C+   E   HL F C FS+ VW +   W    +     TL +  QFSI ++ +
Sbjct: 388 CPFCTTVEECSGHLFFTCVFSMGVWQALHRWLGISVALPASTLANFAQFSITARNK 221


>TC10037 
          Length = 560

 Score = 31.6 bits (70), Expect = 0.27
 Identities = 16/46 (34%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
 Frame = -3

Query: 323 TRVLLQDKGVSCPTN-CASCSHEYEDLNHLMFECPFSIQVWMSAGM 367
           TR  L +KG   PT  C  C    E ++H + +CP + +VW ++ M
Sbjct: 435 TRKRLWNKGAVVPTIFCLRCDRLEETMDHALRDCP*ARRVWFASVM 298


>AV780445 
          Length = 504

 Score = 30.8 bits (68), Expect = 0.46
 Identities = 10/28 (35%), Positives = 16/28 (56%)
 Frame = +2

Query: 341 CSHEYEDLNHLMFECPFSIQVWMSAGMW 368
           C    ED+ H + +CP S ++W+  G W
Sbjct: 68  CPAPEEDI*HCLRDCPHSQEIWLRLGAW 151


>BP076564 
          Length = 371

 Score = 30.4 bits (67), Expect = 0.60
 Identities = 14/53 (26%), Positives = 23/53 (42%)
 Frame = +2

Query: 314 GVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWMSAG 366
           G+ +   LP         ++    C  CS   +D+ H + +CP S +VW   G
Sbjct: 89  GLGLHQALPINARRHACSMAATGGCGRCSAAVKDILHCLQDCPHSREVWNRLG 247


>AV426428 
          Length = 413

 Score = 30.0 bits (66), Expect = 0.79
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 306 PRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWMSA 365
           PR   T +  C+G  LP +  L  +G++    C  C    +  +H +  CP    +W ++
Sbjct: 75  PRCCETGWRACLG-VLPVKASLHARGLAEDPICPRCLAAPKTADHAVLFCP*VHPIWFAS 251

Query: 366 GMWYM----CKM 373
            + +     CKM
Sbjct: 252 SLGFRLNQECKM 287


>TC14834 similar to UP|Q8RX56 (Q8RX56) AT5g06970/MOJ9_14, partial (8%)
          Length = 539

 Score = 30.0 bits (66), Expect = 0.79
 Identities = 16/51 (31%), Positives = 23/51 (44%)
 Frame = -1

Query: 353 FECPFSIQVWMSAGMWYMCKMRP*IRTLLSTQFSIYSKTRLWIFNHLLLLF 403
           F  PF + + +   +W  C +   I  LLS  + I   T  W  N LL+ F
Sbjct: 320 FVAPFVVHIPLMQKIWAFCIVSSEIERLLSHSYGIIFSTEFW--NQLLVCF 174


>NP459575 NADH dehydrogenase subunit [Lotus japonicus]
          Length = 486

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +1

Query: 303 LRSPRKLN--T*FGVCV--GGCLPTRVLLQDKGVSCPTNCASCSHEYE 346
           +R  R LN    FG+C+  G C+            CPTNC S + EYE
Sbjct: 265 IRKKRLLNYSIDFGICIFCGNCIEY----------CPTNCLSMTEEYE 378


>BP044618 
          Length = 176

 Score = 28.9 bits (63), Expect = 1.8
 Identities = 15/47 (31%), Positives = 26/47 (54%)
 Frame = -2

Query: 233 CLLLGKCLATTLLKPF*IHPCMNRFRMIVLFGKWRGTIFIRYVALTV 279
           C+LL    +T  LKP *+    NR+ +++L      ++FI YV+  +
Sbjct: 163 CVLLQLISSTESLKPL*LRKARNRWLLLLLL*VQLPSVFIVYVSTVI 23


>AU089120 
          Length = 586

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 341 CSHEYEDLNHLMFECPFSIQVWMSAGMW 368
           C H  E + HL F C  S  +W S   W
Sbjct: 47  CLHSEESIPHLFFRCFQSWNLWSSVHRW 130


>BP068806 
          Length = 418

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 8/23 (34%), Positives = 15/23 (64%)
 Frame = +3

Query: 341 CSHEYEDLNHLMFECPFSIQVWM 363
           C H++ED+ H + +C  +  VW+
Sbjct: 258 CQHQFEDIWHCLRDCRIARDVWV 326


>AV412895 
          Length = 405

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 10/31 (32%), Positives = 14/31 (44%)
 Frame = +1

Query: 338 CASCSHEYEDLNHLMFECPFSIQVWMSAGMW 368
           C  C    E  +HL+F C  S+ +W     W
Sbjct: 205 CPLCGLAEESGSHLLFSCAESMLIWYECFAW 297


>TC9226 
          Length = 467

 Score = 26.9 bits (58), Expect = 6.7
 Identities = 11/32 (34%), Positives = 18/32 (55%)
 Frame = -1

Query: 260 IVLFGKWRGTIFIRYVALTVFVLKSWLMFPTS 291
           I+ FG W+ T+ I    L +  + +W MF +S
Sbjct: 341 IIAFGNWQSTLIINNPLLQLQRM*AWCMFSSS 246


>BP034485 
          Length = 485

 Score = 26.9 bits (58), Expect = 6.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 334 CPTNCASCSHEYEDLNHLMFECP 356
           C  +  SC H+Y D +H  F CP
Sbjct: 417 CDPHYHSCYHQYHDHDHGHFYCP 349


>TC15080 
          Length = 716

 Score = 26.9 bits (58), Expect = 6.7
 Identities = 21/88 (23%), Positives = 39/88 (43%), Gaps = 1/88 (1%)
 Frame = +3

Query: 320 CLPTRVLLQDKGVS-CPTNCASCSHEYEDLNHLMFECPFSIQVWMSAGMWYMCKMRP*IR 378
           C+PT ++L   G+  C    + C+H +  L  + FEC F+          Y+C +   + 
Sbjct: 465 CIPTLMILW--GIP*CSFEKSLCNHAHYILLSVCFECSFT----------YVCGVGSSM* 608

Query: 379 TLLSTQFSIYSKTRLWIFNHLLLLFVGV 406
           TL+   F   S+    +F     + +G+
Sbjct: 609 TLMIRAFMSKSRRSCLLFGVSHTMMIGI 692


>TC13141 similar to UP|Q9LN64 (Q9LN64) F18O14.6, partial (12%)
          Length = 579

 Score = 26.6 bits (57), Expect = 8.7
 Identities = 16/48 (33%), Positives = 24/48 (49%)
 Frame = +3

Query: 129 VGNFLLILNHLLLAFLRLDTF*IIPISLRLSVTIRVTCGVAFCVPDLL 176
           +G FLL +NHL +AF+ + T    P    LS    + C   +  P L+
Sbjct: 339 IG*FLLAVNHLGVAFINIPT----PTVTTLSHLTFLNCPKEYTQPSLI 470


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.359    0.163    0.562 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,532,902
Number of Sequences: 28460
Number of extensions: 136725
Number of successful extensions: 1500
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of query: 438
length of database: 4,897,600
effective HSP length: 93
effective length of query: 345
effective length of database: 2,250,820
effective search space: 776532900
effective search space used: 776532900
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 57 (26.6 bits)