TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144728.10 + phase: 0 /pseudo
         (1006 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16556 similar to PIR|S65668|S65668 preprotein translocase secA...   133  1e-31
BP054853                                                               65  5e-11
TC11336 similar to UP|Q8S9A5 (Q8S9A5) Glucosyltransferase like p...    29  3.3
TC15178                                                                29  4.3
TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like...    28  5.6

>TC16556 similar to PIR|S65668|S65668 preprotein translocase secA precursor -
            garden pea {Pisum sativum;} , partial (10%)
          Length = 723

 Score =  133 bits (335), Expect = 1e-31
 Identities = 73/104 (70%), Positives = 81/104 (77%)
 Frame = +2

Query: 900  S*S*AISIGCGKNICKH*NLFSKLWVYEGMRNGIHLLNINLRVTTFSWR*WHK*EEMLYI 959
            S*S*AI I CGK+I KH*NLF+KLWVYE M +GIH LN +LR TTFSW+*WHK*EEML+I
Sbjct: 2    S*S*AILIACGKSIYKH*NLFNKLWVYEDMHSGIHSLNTSLRATTFSWK*WHK*EEMLFI 181

Query: 960  LYISLNPCC*SKIRIKLRIRNQVNGMHALGTIQIQIQLVQLSHQ 1003
            LYISLN   *S+IRIK RIRNQ N  HA+  I  Q QL  LS Q
Sbjct: 182  LYISLNL*W*SRIRIKRRIRNQENVTHAIKPIPTQNQLALLSLQ 313


>BP054853 
          Length = 501

 Score = 65.1 bits (157), Expect = 5e-11
 Identities = 34/70 (48%), Positives = 45/70 (63%)
 Frame = +3

Query: 84  KQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRV 143
           + Y   V+ +N  E  I  LSD EL  KT E R R ++ E+L  +  EAFAVVREA++R 
Sbjct: 291 RDYYRLVSSVNAFEPRIQLLSDEELAAKTPEFRRRLERGETLADIQAEAFAVVREAARRK 470

Query: 144 LGLRPFDVQL 153
           LG+R FDVQ+
Sbjct: 471 LGMRHFDVQI 500


>TC11336 similar to UP|Q8S9A5 (Q8S9A5) Glucosyltransferase like protein
          (Fragment), partial (27%)
          Length = 511

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 6  LCSSFTSTTSHSQHRLHHRKT--LNLPGSSFLSREFH 40
          LC  FT   SH+QHR H   T  LN P S +    +H
Sbjct: 29 LCPKFTFWYSHTQHRAHILATSGLNSPLSPWRPNHYH 139


>TC15178 
          Length = 637

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
 Frame = -3

Query: 745 WKTYLLSL-RC*PKH*MKPKRKWRTISLTFGSNCLSMTKYLIAKETEFIQREDEPF 799
           W TYL  L RC*     +P  +W TI  T  +   +M KY I       +R+DE F
Sbjct: 392 W*TYLYLLTRC*EGDHSQPTFRWSTIQSTIHTAIRNMYKYGIISNN---RRKDEMF 234


>TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like
           arabinogalactan protein FLA8 {Arabidopsis thaliana;} ,
           partial (61%)
          Length = 989

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -2

Query: 12  STTSHSQHRLHHRKTLNLPGSSFLSREFHLNSASV--SKTRRSRSRRSGSVAVASLGG 67
           S ++   HR  HR T  L GS+ L R     S S   S T RSR RR       S GG
Sbjct: 736 SYSNGENHRSFHRDTSRLAGSAPLRRSRRSISRSTVRSLTCRSRRRRRKRRGSRSWGG 563


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.353    0.155    0.518 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,065,059
Number of Sequences: 28460
Number of extensions: 239952
Number of successful extensions: 2834
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2077
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 2220
length of query: 1006
length of database: 4,897,600
effective HSP length: 99
effective length of query: 907
effective length of database: 2,080,060
effective search space: 1886614420
effective search space used: 1886614420
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 60 (27.7 bits)