TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144727.12 - phase: 0 
         (160 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV771863                                                               30  0.15
TC14122 similar to UP|Q9FE12 (Q9FE12) Peroxiredoxin precursor, c...    27  2.2
TC9098 similar to UP|O48844 (O48844) 26S proteasome regulatory s...    26  2.9
AI967326                                                               26  2.9
AW720001                                                               25  4.9
BP081946                                                               25  4.9
TC14123 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, parti...    25  6.4
TC8592                                                                 25  8.3

>AV771863 
          Length = 511

 Score = 30.4 bits (67), Expect = 0.15
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 132 KTMEAFLIILTATQLFYIAAIH 153
           + +EAF+IILT TQL Y+  IH
Sbjct: 509 RIVEAFIIILTFTQLLYLMLIH 444


>TC14122 similar to UP|Q9FE12 (Q9FE12) Peroxiredoxin precursor, complete
          Length = 1107

 Score = 26.6 bits (57), Expect = 2.2
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -2

Query: 42  IGPGFDLPAHFSPIYFPMGNAATGFFVTFALIAGVVGIGSL---ISGLNHIRSWTSESLP 98
           +G GF     FSP + P G  ++GF  T+     V+ + S    I  L  +  W + SL 
Sbjct: 836 LGSGF---MDFSPGFHPAGQTSSGFSCTYCKAWSVLLVSSTLLPIPRLLMVECWITPSLS 666

Query: 99  SAAS-VAAIAWA 109
              + + AI W+
Sbjct: 665 IMNNPLNAIPWS 630


>TC9098 similar to UP|O48844 (O48844) 26S proteasome regulatory subunit,
            partial (27%)
          Length = 1097

 Score = 26.2 bits (56), Expect = 2.9
 Identities = 15/57 (26%), Positives = 32/57 (55%)
 Frame = -2

Query: 74   AGVVGIGSLISGLNHIRSWTSESLPSAASVAAIAWALTVLAMGFGCKEIQLNIRNSR 130
            A +  +GS  SG   I + +  S+ +++   A+A  +  +++GFGC + + N  ++R
Sbjct: 1096 AYIFSLGS--SGTLTIEAESPSSI*TSSGAFALALGVEPVSLGFGCADSEGNFGDAR 932


>AI967326 
          Length = 472

 Score = 26.2 bits (56), Expect = 2.9
 Identities = 12/36 (33%), Positives = 18/36 (49%)
 Frame = +1

Query: 82  LISGLNHIRSWTSESLPSAASVAAIAWALTVLAMGF 117
           +I+ LN +R W  + L +    A   W L +LA  F
Sbjct: 100 IITALNWLRPWHEQLLQAFFVAAKCIWLLHLLAFSF 207


>AW720001 
          Length = 542

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 52  FSPIYFPMGNAATGFFVTFALIAGVVGIGSLISGLN 87
           F   +FP  +A+ GFF+    + G    GS ++G +
Sbjct: 154 FCFFFFPSSSASLGFFLEVDALEGRSFFGSFLAGFS 47


>BP081946 
          Length = 476

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 9/17 (52%), Positives = 14/17 (81%)
 Frame = -2

Query: 19  CMYVIVISIGGWAMNRA 35
           CMY++V+S+ G+  NRA
Sbjct: 289 CMYIVVLSLVGFPGNRA 239


>TC14123 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, partial (89%)
          Length = 1130

 Score = 25.0 bits (53), Expect = 6.4
 Identities = 13/42 (30%), Positives = 21/42 (49%)
 Frame = -3

Query: 42  IGPGFDLPAHFSPIYFPMGNAATGFFVTFALIAGVVGIGSLI 83
           +G GF     FSP + P G  ++GF  T+     V+ + S +
Sbjct: 810 LGSGF---MDFSPGFHPAGQTSSGFSCTYCKAWSVLFVSSTL 694


>TC8592 
          Length = 1086

 Score = 24.6 bits (52), Expect = 8.3
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +1

Query: 28  GGWAMNRAIDHGFEIGPGFDLPAHFSPIYFPMG 60
           G WA    +  G   G   D P+HF   Y   G
Sbjct: 289 GSWANGSEMKLGVHTGTHVDAPSHFYDNYLDAG 387


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,696,486
Number of Sequences: 28460
Number of extensions: 34515
Number of successful extensions: 234
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of query: 160
length of database: 4,897,600
effective HSP length: 83
effective length of query: 77
effective length of database: 2,535,420
effective search space: 195227340
effective search space used: 195227340
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)