TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144726.5 - phase: 0 /pseudo
         (293 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proeti...    28  2.4
CB827710                                                               27  4.1
BP074425                                                               27  5.3
TC14046 homologue to UP|P93769 (P93769) Elongation factor-1 alph...    27  5.3
TC19543 similar to UP|Q9LK88 (Q9LK88) NADPH:quinone oxidoreducta...    26  9.1

>TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proetin, partial
           (9%)
          Length = 712

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
 Frame = +2

Query: 25  HQSILLFFDF---GFSTVTGTNFQNTSKRPKTMSIATDTATVTDSAMKEP-FTKYTEYLN 80
           HQ + LF  F   G+ TV G      S   K          +  + +K P      E  +
Sbjct: 32  HQQMTLFCVFCK*GYDTVVGERGTLLSGGQK------QRVAIARAIIKTPNILLLDEATS 193

Query: 81  NLNDKRERVVKASRDITMNSKKVIFQVHRMSKYNKDEVLEKAEKDLAAVTNQH 133
            L+ + ERVV+ + D  M ++  +   HR+S     +V+   +  +     +H
Sbjct: 194 ALDAESERVVQDALDKVMVNRTTVIVAHRLSTIKNADVITVLKNGVIVEKGRH 352


>CB827710 
          Length = 560

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 87  ERVVKASRDITMNSKKVIFQVHRMSKYNKDEVLEKAEKD 125
           ER++K +R++ + S  +  ++HR      + V  +A+KD
Sbjct: 247 ERILKETREVQLESNSIQERLHRTYAVADEIVFREAKKD 363


>BP074425 
          Length = 393

 Score = 26.6 bits (57), Expect = 5.3
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = -2

Query: 275 FMSEDQSIYHFWDQMIQ 291
           FM EDQSI  F DQMIQ
Sbjct: 392 FM*EDQSILDFSDQMIQ 342


>TC14046 homologue to UP|P93769 (P93769) Elongation factor-1 alpha, partial
           (84%)
          Length = 1506

 Score = 26.6 bits (57), Expect = 5.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 161 VEAATFCSFCKNGTLLK-LDEINKTLLPLSDPSLQPLQ 197
           +E +T   + K  TLL+ LD+INK   P   P   PLQ
Sbjct: 685 IERSTNLDWYKGPTLLEALDQINKPKRPTDKPLRLPLQ 798


>TC19543 similar to UP|Q9LK88 (Q9LK88) NADPH:quinone oxidoreductase, partial
           (67%)
          Length = 568

 Score = 25.8 bits (55), Expect = 9.1
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +3

Query: 174 TLLKLDEINKTLLPLSDPSLQPLQINILDYILGLADLTGELMRLAIGRIS 223
           T LKL    K LL L   SL PL+I IL  +     LTG L     G ++
Sbjct: 9   TQLKLKLFVKRLLELIAFSLLPLRIIILLQLHSRMPLTGHLYNPMFGLVN 158


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,036,301
Number of Sequences: 28460
Number of extensions: 42910
Number of successful extensions: 247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of query: 293
length of database: 4,897,600
effective HSP length: 90
effective length of query: 203
effective length of database: 2,336,200
effective search space: 474248600
effective search space used: 474248600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)