TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144726.11 + phase: 0 
         (515 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18487 similar to UP|O80953 (O80953) At2g39280 protein, partial...    30  0.73
TC11518 homologue to UP|FTSH_MEDSA (Q9BAE0) Cell division protei...    30  0.95
TC18268 weakly similar to UP|Q9C9S6 (Q9C9S6) Kinesin-related pro...    30  0.95
BP078454                                                               30  1.2
TC14470 similar to UP|AAQ56728 (AAQ56728) Polygalacturonase inhi...    30  1.2
CB829109                                                               29  1.6
TC15605                                                                29  1.6
TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , p...    29  2.1
TC20132 similar to UP|Q7X9L1 (Q7X9L1) Holocarboxylase synthetase...    28  2.8
AU251952                                                               28  2.8
TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28...    28  3.6
TC16093 weakly similar to UP|PF21_ARATH (Q04088) Possible transc...    28  3.6
AV768195                                                               28  4.7
AV780944                                                               27  8.0
TC12713                                                                27  8.0

>TC18487 similar to UP|O80953 (O80953) At2g39280 protein, partial (13%)
          Length = 592

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 30/119 (25%), Positives = 50/119 (41%), Gaps = 8/119 (6%)
 Frame = +1

Query: 61  FSFSEHPFSFSSI----SLNHFRTYGSVAAEAIESTDTEDDCSG----SEEVVQKLLDQM 112
           F F   P +  S     SL+   +  + A E + S   E D        E+VV   ++  
Sbjct: 142 FGFKHDPKNEQSADMLGSLSRSESGSTNADEILISLTGEGDIDSVPDLHEQVVGLKVELC 321

Query: 113 VIEEEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLA 171
            + EEK++  L  ++         K   RRQ+  + E  EE   + ++ L D +EQ+ A
Sbjct: 322 RLLEEKRSAILRAEELETALMEMVKQDNRRQLSAKVEQLEEEIAQLRQALSDKQEQETA 498


>TC11518 homologue to UP|FTSH_MEDSA (Q9BAE0) Cell division protein ftsH
           homolog, chloroplast precursor  , partial (16%)
          Length = 719

 Score = 30.0 bits (66), Expect = 0.95
 Identities = 15/35 (42%), Positives = 20/35 (56%)
 Frame = +3

Query: 18  SQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTS 52
           +Q+ TS     QH   E   +H F R +Q+GIFTS
Sbjct: 228 NQTITSSTLMSQHMVSETQEKHQFLRTTQIGIFTS 332


>TC18268 weakly similar to UP|Q9C9S6 (Q9C9S6) Kinesin-related protein,
           partial (5%)
          Length = 617

 Score = 30.0 bits (66), Expect = 0.95
 Identities = 29/121 (23%), Positives = 53/121 (42%), Gaps = 4/121 (3%)
 Frame = +2

Query: 85  AAEAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSY----KYKMLR 140
           A EA+ +  TE++     EVV + + Q+    + +  + EEKKK +   +    K K+  
Sbjct: 41  ALEALAAGATEEN-----EVVTRWVQQLKFTMQLEQTKFEEKKKLEEQDFSRLKKDKVRN 205

Query: 141 RRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICK 200
             +I    +  + A R Y+E +  +  Q       Y K +       LK+ +A  ++  K
Sbjct: 206 EIEISALKQDLDMAKRTYEEHVSQLELQAAESKAEYEKRIV-----ELKHQLADARKQVK 370

Query: 201 D 201
           D
Sbjct: 371 D 373


>BP078454 
          Length = 385

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 20/61 (32%), Positives = 30/61 (48%), Gaps = 10/61 (16%)
 Frame = -3

Query: 273 ATSHKSDSDSVPAPVKGENL--------TAEENEKLAKEEKR--LRNKVASLIKKQKKQQ 322
           AT  + D DS      G  +          +EN+K  KEEK+   +NKV   +KK+K++ 
Sbjct: 317 ATDPEEDGDSSSGSETGSPVDKKAARKEARKENKKKVKEEKKEARKNKVPKAVKKRKQKM 138

Query: 323 A 323
           A
Sbjct: 137 A 135


>TC14470 similar to UP|AAQ56728 (AAQ56728) Polygalacturonase inhibiting
           protein, partial (93%)
          Length = 1195

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +3

Query: 17  PSQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSNFSFS----EHPFSFSS 72
           P  +S  L   ++ +F   +L    S    V   T    L R+  +F     E P S  S
Sbjct: 618 PIPTSLGLIDPNRIDFSRNMLEGDASMLFGVNKTTEMIDLSRNLLTFDMSKVELPTSLIS 797

Query: 73  ISLNHFRTYGSVAAEAIE 90
           + LNH + YGS+  E I+
Sbjct: 798 LDLNHNQIYGSIPQELIK 851


>CB829109 
          Length = 514

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 85  AAEAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKNN 132
           AA +  ST   ++ S S  ++Q ++        KK+P+++E K+N NN
Sbjct: 350 AARSTGSTGANEESSRSHAILQLVV--------KKHPEVKESKRNNNN 469


>TC15605 
          Length = 576

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 15/35 (42%), Positives = 19/35 (53%)
 Frame = +3

Query: 361 PANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYG 395
           PAN F DGG   FPA      +IS+  NN +  +G
Sbjct: 225 PANPFADGGFGAFPA-----NSISHPQNNNNNPFG 314


>TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , partial
           (89%)
          Length = 1672

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 116 EEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETE 149
           +EKK  +L++KKK K    K K  ++R++  E E
Sbjct: 156 QEKKKKKLKKKKKKKKKKKKKKKKKQRKMVAEAE 257


>TC20132 similar to UP|Q7X9L1 (Q7X9L1) Holocarboxylase synthetase
           (Fragment), partial (11%)
          Length = 524

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 120 NPQLEEKKKNKNNSYKYKMLRRRQIKIETE 149
           NP  E++   K + YK+K+L++++ K+  E
Sbjct: 519 NPDFEKEGSGKQSRYKFKILKKKEKKLYKE 430


>AU251952 
          Length = 323

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = -1

Query: 290 ENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQA 333
           EN    +N K  K++K+L+N+    + KQK++ ++   KGRD++
Sbjct: 200 ENKKTTKNHKKKKKKKKLQNR----LTKQKEEGSVLDQKGRDKS 81


>TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28040
           {Arabidopsis thaliana;}, partial (8%)
          Length = 937

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
 Frame = -3

Query: 275 SHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKV-----ASLIKKQKKQQALGIVKG 329
           +HK  +   PAP K     A E+   A + KR + K      A+     ++ +  G   G
Sbjct: 521 THKPKAQPSPAPAKSAAKRAAESNANAGDSKRAKKKAVDSAPAAAAGSDEEMEEDGKKSG 342

Query: 330 RDQAKP----WGQEAQVKVGSRLIQLLIET 355
            D  K     W  E ++ +   L   + +T
Sbjct: 341 NDSKKQFTRLWSDEDEIAILKGLADFISKT 252


>TC16093 weakly similar to UP|PF21_ARATH (Q04088) Possible transcription
           factor PosF21 (AtbZIP59), partial (17%)
          Length = 570

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 10  SSRRFILPSQSSTSLRFSHQHN 31
           +S +FIL S SSTS+ FS+Q N
Sbjct: 95  NSSKFILRSTSSTSINFSNQFN 160


>AV768195 
          Length = 334

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 11/65 (16%)
 Frame = -1

Query: 26  FSHQHNFPEKILRHPFSRFSQV----GIFTSEYK-----LGRSNFSFS--EHPFSFSSIS 74
           F HQH  P  +L + FS+   V    G     Y      +GR NFS++   H F+F+++ 
Sbjct: 196 FGHQHGSPS*LLEYVFSQDHYVYYV*GNSFKNYS*DKIMMGRRNFSWTSVHHDFTFTAMF 17

Query: 75  LNHFR 79
              F+
Sbjct: 16  KRVFK 2


>AV780944 
          Length = 542

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 20/84 (23%), Positives = 33/84 (38%), Gaps = 6/84 (7%)
 Frame = -3

Query: 1   MWSKLAKRASSRRFILPSQSSTSLRFSHQHNF---PEKILRHPFSRFSQVGIFTSEYKLG 57
           +W  L  RAS    + P  SS      H H     P + ++ P      +      Y L 
Sbjct: 429 LWEDLQVRASLYEQVQPKLSSLHAMNQHPHQVKTAPTQRMKPPHKGKMSIAKLCVRYLLL 250

Query: 58  RSN---FSFSEHPFSFSSISLNHF 78
           +++   + +  H  + S +SL HF
Sbjct: 249 QTHAQQYPYPSHQITTSQLSLLHF 178


>TC12713 
          Length = 412

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = +3

Query: 63  FSEHPFSFSSISLNHFRTY--GSVAAEAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKN 120
           F+EHP   +SI LN+ R    GS+             C    +VV+ L            
Sbjct: 27  FTEHPLRKASIFLNNTRKSRKGSLRKNKFMGV-----CGSRPKVVEDL------------ 155

Query: 121 PQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLA 171
               + KKNK+   + ++LRRR    + EA  +AA  +  L    R   +A
Sbjct: 156 ----KLKKNKHRRRRRRILRRRVSSQKIEA--DAAHSHSVLQTSNRASDVA 290


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,244,909
Number of Sequences: 28460
Number of extensions: 106320
Number of successful extensions: 614
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of query: 515
length of database: 4,897,600
effective HSP length: 94
effective length of query: 421
effective length of database: 2,222,360
effective search space: 935613560
effective search space used: 935613560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)