TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144724.5 - phase: 0 /pseudo
         (534 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV768333                                                               30  0.75
BP050728                                                               28  3.7
TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (...    27  6.3
BU494350                                                               27  8.3

>AV768333 
          Length = 493

 Score = 30.4 bits (67), Expect = 0.75
 Identities = 13/32 (40%), Positives = 19/32 (58%)
 Frame = +2

Query: 181 TSFYWKKKERTRQDLRSGKGSATSTTTRWRKE 212
           TSF+   K +   +  S K S TS+TT W+K+
Sbjct: 380 TSFFHSSKPQLHSNPHSSKSSNTSSTTSWKKK 475


>BP050728 
          Length = 511

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +2

Query: 422 GTNKVGWEWIGGGLNI-----ISLRVMKLQCQKSFLQPWNSTL--QFLRIIFNYLQKDLR 474
           G    G  W+GGG+N          V K+    + LQ W S +    L+I+ N++  D+ 
Sbjct: 56  GGGSGGMVWVGGGINTPNPNPSGSSVSKVNAAYTALQAWKSAITDDPLKILVNWVGSDV- 232

Query: 475 CTTSNFF 481
           C+    F
Sbjct: 233 CSYKGVF 253


>TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (15%)
          Length = 1392

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 13/29 (44%), Positives = 16/29 (54%)
 Frame = -2

Query: 201 SATSTTTRWRKEGPRAYASSVGVSITQPS 229
           S TSTTT W +   R + S   VS+  PS
Sbjct: 845 STTSTTTIWTRHSTRMFISIPIVSVISPS 759


>BU494350 
          Length = 537

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 18/57 (31%), Positives = 24/57 (41%), Gaps = 14/57 (24%)
 Frame = -2

Query: 369 WTWC*A-CRG*IPWVRY*W-----------IGRLSLCNSCMKEKW*RCW--GKVASR 411
           W WC*   R *+ W+   W           +GR   C  C   +W  CW  G ++SR
Sbjct: 497 WNWC*V*GRL*LEWITS-WCRPRFRLWCSTLGRCCGCRRCFYRQWLACWLLGCLSSR 330


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.357    0.157    0.630 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,223,099
Number of Sequences: 28460
Number of extensions: 169644
Number of successful extensions: 1824
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 1424
length of query: 534
length of database: 4,897,600
effective HSP length: 95
effective length of query: 439
effective length of database: 2,193,900
effective search space: 963122100
effective search space used: 963122100
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 57 (26.6 bits)