BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144724.10 - phase: 0 /pseudo
(1449 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU089582 84 2e-32
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 98 6e-27
BP054462 95 7e-20
BF177840 87 2e-17
AV427422 86 5e-17
BP055130 62 4e-11
BP046863 58 9e-09
BP085845 57 3e-08
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 55 1e-07
BP033788 29 4.6
BP040614 28 7.9
>AU089582
Length = 383
Score = 84.0 bits (206), Expect(2) = 2e-32
Identities = 38/62 (61%), Positives = 49/62 (78%)
Frame = +2
Query: 1155 LSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGTW 1214
+SDR +FTS FW+S Q ALG++L++S+A+HPQTDGQSERTIQ LED+LR CV + G
Sbjct: 77 ISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQSERTIQILEDMLRACVXDLRGXL 256
Query: 1215 DS 1216
S
Sbjct: 257 GS 262
Score = 73.9 bits (180), Expect(2) = 2e-32
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +3
Query: 1212 GTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRTQLCWFESG 1256
G+WD +L L+EF YNNSY SSI MAPFEALYGRRCR+ + WFE G
Sbjct: 249 GSWDQYLSLMEFAYNNSYRSSI*MAPFEALYGRRCRSPIGWFEVG 383
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 98.2 bits (243), Expect(2) = 6e-27
Identities = 47/79 (59%), Positives = 63/79 (79%)
Frame = +3
Query: 1309 RVTPVTGVGRALKSKKLTPRFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYV 1368
RV+P+ GV R K KL+PRFIGP+++ ERVG+V+YR+ LPP LS +H VFHVS LRKY+
Sbjct: 3 RVSPMKGVLRFGKKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRKYL 182
Query: 1369 PDPSHVIQSDDVQVRDNLT 1387
DPSHVI+ +DVQ+ +L+
Sbjct: 183 YDPSHVIRHEDVQLDVHLS 239
Score = 41.2 bits (95), Expect(2) = 6e-27
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 1406 KEIPLVRVVWDGATGESLTWELESKMLESYPKLF 1439
K++ V+V+W G +GE TWE E M E YP LF
Sbjct: 296 KDVGSVKVLWRGPSGEEATWEAEDIMREKYPHLF 397
>BP054462
Length = 422
Score = 95.1 bits (235), Expect = 7e-20
Identities = 52/141 (36%), Positives = 84/141 (58%), Gaps = 1/141 (0%)
Frame = +1
Query: 1226 NNSYHSSIGMAPFEALYGRRCRTQLCWFESGGRVVLGPEIVQQTTEKVKMIQEKMKASQS 1285
N++Y+ S M+PF+ALYGR L ++ ++ E + ++ + SQ
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 1286 RQKSYHDKRRKDLEFQEGDHVFLRVTPVTGVGRALK-SKKLTPRFIGPYQISERVGTVAY 1344
++Y +K+R+D+++Q GD VFL++ P A K ++KL+PR+ GPY I ++G VAY
Sbjct: 181 MMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 360
Query: 1345 RVGLPPHLSNLHDVFHVSQLR 1365
R+ LP H S +H VFHVS L+
Sbjct: 361 RLELPAH-SRVHPVFHVSLLK 420
>BF177840
Length = 410
Score = 87.0 bits (214), Expect = 2e-17
Identities = 49/127 (38%), Positives = 70/127 (54%)
Frame = +2
Query: 1155 LSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGTW 1214
+SDRD +F S FW++L +G+KL S+ HPQTDGQ+E ++L LLR + W
Sbjct: 20 VSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNLKMW 199
Query: 1215 DSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRTQLCWFESGGRVVLGPEIVQQTTEKVK 1274
++ LP IEF YN HS+ +PFE +YG T L +L + + E VK
Sbjct: 200 ETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDLLPMPNTYLLKHKDGKAKAEFVK 379
Query: 1275 MIQEKMK 1281
+ EK+K
Sbjct: 380 RLHEKIK 400
>AV427422
Length = 417
Score = 85.5 bits (210), Expect = 5e-17
Identities = 39/83 (46%), Positives = 54/83 (64%)
Frame = +1
Query: 1155 LSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGTW 1214
+SDRDP F S FWK L + G+KL++S+AYHP++DGQ+E + LE LR + +Q +W
Sbjct: 169 VSDRDPLFMSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSW 348
Query: 1215 DSHLPLIEFTYNNSYHSSIGMAP 1237
+P E+ YN SYH S G P
Sbjct: 349 AHWVPWAEYWYNTSYHVSTGQTP 417
>BP055130
Length = 567
Score = 61.6 bits (148), Expect(2) = 4e-11
Identities = 32/64 (50%), Positives = 40/64 (62%)
Frame = +2
Query: 1155 LSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGTW 1214
+SDRD FTS FWK + G+ L +SS+YHPQTDGQ+E + LE LR V E W
Sbjct: 323 VSDRDKAFTSAFWKHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLW 502
Query: 1215 DSHL 1218
S+L
Sbjct: 503 VSYL 514
Score = 24.3 bits (51), Expect(2) = 4e-11
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = +3
Query: 1218 LPLIEFTYNNSYHSSIG 1234
LP E+ YN+S+ +SIG
Sbjct: 516 LPWAEYCYNSSFQTSIG 566
>BP046863
Length = 580
Score = 58.2 bits (139), Expect = 9e-09
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 12/113 (10%)
Frame = +1
Query: 1266 VQQTTEKVKMIQEKMKA-----------SQSRQKSYHDKRRKDLEFQEGDHVFLRVTPVT 1314
++ + E V M+ E+ A +Q + ++ +K R+ +++Q G+ VFL++ P
Sbjct: 244 IKLSVEAVNMLIEERDALLLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYK 423
Query: 1315 GVGRAL-KSKKLTPRFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRK 1366
A K++KL+PRF GP+++ ERV VAY + L S +H VFH+S L K
Sbjct: 424 LQNLAQRKNQKLSPRFYGPFKVLERVVQVAY*LDLXSE-SRVHPVFHLSLLEK 579
>BP085845
Length = 464
Score = 56.6 bits (135), Expect = 3e-08
Identities = 34/106 (32%), Positives = 57/106 (53%)
Frame = -2
Query: 1321 KSKKLTPRFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVPDPSHVIQSDDV 1380
K +K + IGP++I E V +AY + +L H V HV+ L + + D S I + V
Sbjct: 421 KKRKTESKIIGPFKILEMVCLIAY*LTHSLYLLAAHIVLHVTLLWRNLYDQSQNICHEGV 242
Query: 1381 QVRDNLTVETLPLRIDDRKVKTLRGKEIPLVRVVWDGATGESLTWE 1426
+ ++ + P+ + D KV+ +R K I V+V+W G +G +WE
Sbjct: 241 XLGEHWSHMEHPIVMVDMKVRCMRPKNIDDVKVIWRGLSG*EKSWE 104
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/83 (33%), Positives = 46/83 (54%)
Frame = +2
Query: 1161 RFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGTWDSHLPL 1220
+FTS+ + + +G ++R SS HPQT+GQ+E + + ++ + E G W LP+
Sbjct: 20 QFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWIDELPI 199
Query: 1221 IEFTYNNSYHSSIGMAPFEALYG 1243
+ ++YN SSI PF YG
Sbjct: 200 VLWSYNTMPQSSIKETPF*LTYG 268
>BP033788
Length = 518
Score = 29.3 bits (64), Expect = 4.6
Identities = 14/43 (32%), Positives = 25/43 (57%)
Frame = +3
Query: 1168 KSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 1210
KSLQ G++++L + P+ D ERT+Q D ++ V ++
Sbjct: 75 KSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEVAQE 203
>BP040614
Length = 504
Score = 28.5 bits (62), Expect = 7.9
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 1349 PPHLSNLHDVFHVSQLRKYVPDPSHVIQSDDV---QVRDNLTVETLPLRIDDRKVKTLRG 1405
PP+ L D+FH+S+ R +Q ++ QVRD L R+D R L G
Sbjct: 4 PPNY*GLRDLFHISKDRADSIKYEVFVQMIEIYNEQVRDLLVSNGSNRRLDIRNNSQLNG 183
Query: 1406 KEIP 1409
+P
Sbjct: 184 LNVP 195
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.362 0.162 0.603
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,135,234
Number of Sequences: 28460
Number of extensions: 384957
Number of successful extensions: 3886
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 3050
length of query: 1449
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1347
effective length of database: 1,994,680
effective search space: 2686833960
effective search space used: 2686833960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 61 (28.1 bits)
Medicago: description of AC144724.10