BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144722.18 + phase: 0 /pseudo
(433 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14233 homologue to UP|Q41027 (Q41027) PsHSC71.0, partial (67%) 305 7e-84
TC14234 homologue to UP|Q41027 (Q41027) PsHSC71.0, partial (66%) 272 4e-76
TC8353 homologue to UP|HS7M_PHAVU (Q01899) Heat shock 70 kDa pro... 266 4e-72
BP040870 255 9e-69
BP044919 239 8e-64
BP064075 180 5e-46
TC9795 homologue to UP|Q9ATB8 (Q9ATB8) BiP-isoform D (Fragment),... 176 9e-45
TC18168 homologue to UP|Q8GSN4 (Q8GSN4) Non-cell-autonomous heat... 167 2e-42
AW720237 151 2e-37
BP041494 136 6e-33
BP083571 127 3e-30
CB827219 105 2e-23
TC18256 homologue to UP|Q9M4E8 (Q9M4E8) Heat shock protein 70, p... 100 6e-22
AW163930 99 1e-21
AV769455 89 1e-18
AV409958 74 4e-14
AV428240 74 6e-14
AW428869 71 3e-13
AV412686 69 2e-12
AV427312 53 9e-08
>TC14233 homologue to UP|Q41027 (Q41027) PsHSC71.0, partial (67%)
Length = 1570
Score = 305 bits (782), Expect = 7e-84
Identities = 156/242 (64%), Positives = 193/242 (79%), Gaps = 1/242 (0%)
Frame = +1
Query: 193 VSILTVKNNVFEVKATAGDTHLGGQDFDNIMVDHFVKEFRNKYKEDISENSKALRRLRTA 252
VS+LT++ +FEVKATAGDTHLGG+DFDN MV+HFV+EF+ K K+DIS N +ALRRLRTA
Sbjct: 1 VSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTA 180
Query: 253 CEKAKRTLSYDTDATIELDAIYKGIDFCSSITRAKFEEMNMNLFEKCMNTVNICLADAKM 312
CE+AKRTLS TIE+D++Y+GIDF S ITRA+FEEMNM+LF KCM V CL DAKM
Sbjct: 181 CERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEEMNMDLFRKCMEPVEKCLRDAKM 360
Query: 313 DKNSVDDVVLVGGSSRIPKVRQLLQEVFKGKELCKSINPDEAVAYGAVVQAALLS-EGSK 371
DK SV DVVLVGGS+RIPKV+QLLQ+ F GKELCKSINPDEAVAYGA VQAA+LS EG++
Sbjct: 361 DKRSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNE 540
Query: 372 NVPNLVLRDVTPLSFGVSELGNLMSVMIPRNTSIPVTVEKTKTYYECYDYYNKYSVTVKV 431
V +L+L DVTPLS G+ G +M+V+IPRNT+IP E+ + Y N+ V ++V
Sbjct: 541 KVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYS----DNQPGVLIQV 708
Query: 432 YQ 433
++
Sbjct: 709 FE 714
>TC14234 homologue to UP|Q41027 (Q41027) PsHSC71.0, partial (66%)
Length = 1528
Score = 272 bits (695), Expect(2) = 4e-76
Identities = 140/220 (63%), Positives = 173/220 (78%), Gaps = 1/220 (0%)
Frame = +3
Query: 215 GGQDFDNIMVDHFVKEFRNKYKEDISENSKALRRLRTACEKAKRTLSYDTDATIELDAIY 274
GG+DFDN MV+HFV+EF+ K K+DIS N +ALRRLRTACE+AKRTLS TIE+D++Y
Sbjct: 48 GGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY 227
Query: 275 KGIDFCSSITRAKFEEMNMNLFEKCMNTVNICLADAKMDKNSVDDVVLVGGSSRIPKVRQ 334
+GIDF S ITRA+FEE+NM+LF KCM V CL DAKMDK SV DVVLVGGS+RIPKV+Q
Sbjct: 228 EGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKKSVHDVVLVGGSTRIPKVQQ 407
Query: 335 LLQEVFKGKELCKSINPDEAVAYGAVVQAALLS-EGSKNVPNLVLRDVTPLSFGVSELGN 393
LLQ+ F GKELCKSINPDEAVAYGA VQAA+LS EG++ V +L+L DVTPLS G+ G
Sbjct: 408 LLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGG 587
Query: 394 LMSVMIPRNTSIPVTVEKTKTYYECYDYYNKYSVTVKVYQ 433
+M+V+IPRNT+IP E+ + Y N+ V ++VY+
Sbjct: 588 VMTVLIPRNTTIPTKKEQVFSTYS----DNQPGVLIQVYE 695
Score = 30.0 bits (66), Expect(2) = 4e-76
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 199 KNNVFEVKATAGDTHL 214
+ +FEVKATAGDTHL
Sbjct: 1 EEGIFEVKATAGDTHL 48
>TC8353 homologue to UP|HS7M_PHAVU (Q01899) Heat shock 70 kDa protein,
mitochondrial precursor, partial (74%)
Length = 1752
Score = 266 bits (681), Expect = 4e-72
Identities = 155/325 (47%), Positives = 207/325 (63%), Gaps = 4/325 (1%)
Frame = +3
Query: 113 EIAEAFLQTPVKNAVISVPAYFNDSQRRATKDAGAIAGLNVMQIINEPTAAALAYGLQKR 172
E AEA+L V AVI+VPAYFND+ R+ATKDAG IAGL+V +IINEPTAAAL+YG+ +
Sbjct: 3 ETAEAYLGKSVSKAVITVPAYFNDAHRQATKDAGRIAGLDVQRIINEPTAAALSYGMTNK 182
Query: 173 ANCVDKRNIFIFDLGGGTFDVSILTVKNNVFEVKATAGDTHLGGQDFDNIMVDHFVKEFR 232
I +FDLGGGTFDVSIL + N VFEVKAT GDT LGG+DFDN ++D V EF+
Sbjct: 183 EGL-----IAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVDEFK 347
Query: 233 NKYKEDISENSKALRRLRTACEKAKRTLSYDTDATIELDAIYKGIDFCS----SITRAKF 288
D+S++ AL+RLR A EKAK LS + I L I ++TR+KF
Sbjct: 348 RTESIDLSKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKF 527
Query: 289 EEMNMNLFEKCMNTVNICLADAKMDKNSVDDVVLVGGSSRIPKVRQLLQEVFKGKELCKS 348
E + +L E+ CL DA + VD+V+LVGG +R+PKV++++ +F GK K
Sbjct: 528 EALVNHLIERTKAPCKNCLKDANISIKEVDEVLLVGGMTRVPKVQEVVSAIF-GKSPSKG 704
Query: 349 INPDEAVAYGAVVQAALLSEGSKNVPNLVLRDVTPLSFGVSELGNLMSVMIPRNTSIPVT 408
+NPDEAVA GA +Q +L +V L+L DVTPLS G+ LG + + +I RNT+IP
Sbjct: 705 VNPDEAVAMGAAIQGGIL---RGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIP-- 869
Query: 409 VEKTKTYYECYDYYNKYSVTVKVYQ 433
+K++ + D N+ V +KV Q
Sbjct: 870 TKKSQVFSTAAD--NQTQVGIKVLQ 938
>BP040870
Length = 505
Score = 255 bits (652), Expect = 9e-69
Identities = 121/167 (72%), Positives = 150/167 (89%)
Frame = +2
Query: 89 VNYKGEEKRFVAEEISSVILSKMREIAEAFLQTPVKNAVISVPAYFNDSQRRATKDAGAI 148
VNYKGEEK+F AEEISS++L KM+EIAEA+L T +KNAV++VPAYFNDSQR+ATKDAG I
Sbjct: 5 VNYKGEEKQFSAEEISSMVLMKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVI 184
Query: 149 AGLNVMQIINEPTAAALAYGLQKRANCVDKRNIFIFDLGGGTFDVSILTVKNNVFEVKAT 208
+GLNVM+IINEPTAAA+AYGL K+A ++N+ IFDLGGGTFDVS+LT++ +FEVK+T
Sbjct: 185 SGLNVMRIINEPTAAAIAYGLDKKATSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKST 364
Query: 209 AGDTHLGGQDFDNIMVDHFVKEFRNKYKEDISENSKALRRLRTACEK 255
AGDTHLGG+DFDN MV+HFV+EF+ K K+DIS N++ALRRLRTACE+
Sbjct: 365 AGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNARALRRLRTACER 505
>BP044919
Length = 519
Score = 239 bits (609), Expect = 8e-64
Identities = 116/150 (77%), Positives = 139/150 (92%)
Frame = +3
Query: 72 IFAFKVIAGTNDKPTIVVNYKGEEKRFVAEEISSVILSKMREIAEAFLQTPVKNAVISVP 131
++ FKVIAGT+DKP IVV +KGEEK+ V EEISS++LSKM+EIAEAFL++ VKNAV++VP
Sbjct: 69 LWPFKVIAGTDDKPMIVVKHKGEEKKLVPEEISSMVLSKMKEIAEAFLESSVKNAVVTVP 248
Query: 132 AYFNDSQRRATKDAGAIAGLNVMQIINEPTAAALAYGLQKRANCVDKRNIFIFDLGGGTF 191
AYFND+QR+ATKDAG IAGLNVM+IINEPTAAALAYGLQKRAN V +RN+FIFDLGGGTF
Sbjct: 249 AYFNDAQRKATKDAGTIAGLNVMRIINEPTAAALAYGLQKRANLVGERNVFIFDLGGGTF 428
Query: 192 DVSILTVKNNVFEVKATAGDTHLGGQDFDN 221
DVS+LT+K++ FEVKAT+GDTHLG +DFDN
Sbjct: 429 DVSLLTIKDDNFEVKATSGDTHLGXKDFDN 518
>BP064075
Length = 554
Score = 180 bits (456), Expect = 5e-46
Identities = 91/149 (61%), Positives = 116/149 (77%), Gaps = 1/149 (0%)
Frame = -2
Query: 267 TIELDAIYKGIDFCSSITRAKFEEMNMNLFEKCMNTVNICLADAKMDKNSVDDVVLVGGS 326
TIELD +Y+GIDF SSITRAKFEE+N + F+KCM V C+ D+KMDK+++ DVVLVGGS
Sbjct: 553 TIELDFLYQGIDFYSSITRAKFEELNKDYFQKCMELVEKCVIDSKMDKSNIHDVVLVGGS 374
Query: 327 SRIPKVRQLLQEVFKGKELCKSINPDEAVAYGAVVQAALLS-EGSKNVPNLVLRDVTPLS 385
SRIPKVRQLL + F K+LC INPDEAVA+GA V A++LS E S+ V +L+LR+VTPLS
Sbjct: 373 SRIPKVRQLLMDFFGRKDLCNRINPDEAVAHGAAVHASILSGEFSEKVQSLLLREVTPLS 194
Query: 386 FGVSELGNLMSVMIPRNTSIPVTVEKTKT 414
G+ + G +M +IPRNT IP T++ T
Sbjct: 193 LGLEKHGGIMETIIPRNTMIPTTMDHVFT 107
>TC9795 homologue to UP|Q9ATB8 (Q9ATB8) BiP-isoform D (Fragment), partial
(63%)
Length = 981
Score = 176 bits (445), Expect = 9e-45
Identities = 100/177 (56%), Positives = 119/177 (66%), Gaps = 22/177 (12%)
Frame = +1
Query: 7 GVAIGIDLGTTYSCVGVWHEQNDRVEIIHNDQGNRTTPSCVAFTNSQRLIGDAAKNQAAT 66
G IGIDLGTTYSCVGV+ +N VEII NDQGNR TPS VAF + +RLIG+AAKNQ A
Sbjct: 145 GTVIGIDLGTTYSCVGVY--RNGHVEIIANDQGNRITPSWVAFNDGERLIGEAAKNQFAV 318
Query: 67 NPSNTIFAFKVIAGT---------------------NDKPTIVVNYK-GEEKRFVAEEIS 104
NP TIF K + G + KP I V K GE K F EE+S
Sbjct: 319 NPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEVS 498
Query: 105 SVILSKMREIAEAFLQTPVKNAVISVPAYFNDSQRRATKDAGAIAGLNVMQIINEPT 161
++IL+KM+E AEAFL + +AV++VPAYFND+QR+ATKDAG IAGLNV +IINEPT
Sbjct: 499 AMILTKMKETAEAFLGKKINDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPT 669
Score = 122 bits (305), Expect = 1e-28
Identities = 59/111 (53%), Positives = 84/111 (75%)
Frame = +2
Query: 151 LNVMQIINEPTAAALAYGLQKRANCVDKRNIFIFDLGGGTFDVSILTVKNNVFEVKATAG 210
L ++++ P AAA+AYGL K+ ++NI +FDLGGGTFDVSILT+ N VFEV AT G
Sbjct: 638 LMLLELSMNPPAAAIAYGLDKKGG---EKNILVFDLGGGTFDVSILTIDNGVFEVLATNG 808
Query: 211 DTHLGGQDFDNIMVDHFVKEFRNKYKEDISENSKALRRLRTACEKAKRTLS 261
DTHLGG+DFD ++++F+K + K+ +DIS++++AL +LR E+AKR LS
Sbjct: 809 DTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALS 961
>TC18168 homologue to UP|Q8GSN4 (Q8GSN4) Non-cell-autonomous heat shock
cognate protein 70, partial (23%)
Length = 508
Score = 167 bits (424), Expect = 2e-42
Identities = 92/152 (60%), Positives = 109/152 (71%), Gaps = 22/152 (14%)
Frame = +2
Query: 1 MEEKYEGVAIGIDLGTTYSCVGVWHEQNDRVEIIHNDQGNRTTPSCVAFTNSQRLIGDAA 60
M K EG AIGIDLGTTYSCVGVW Q+DRVEII NDQGNRTTPS VAFT+++RLIGDAA
Sbjct: 59 MAGKGEGPAIGIDLGTTYSCVGVW--QHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAA 232
Query: 61 KNQAATNPSNTIF----------------------AFKVIAGTNDKPTIVVNYKGEEKRF 98
KNQ A NP NT+F FKV +G +KP I V+YKGE+K+F
Sbjct: 233 KNQVAMNPINTVFDAKRLIGRRVSDASVQSDMKLWPFKVNSGPAEKPMIQVSYKGEDKQF 412
Query: 99 VAEEISSVILSKMREIAEAFLQTPVKNAVISV 130
AEEISS++L KMREIAEA+L + +KNAV++V
Sbjct: 413 AAEEISSMVLMKMREIAEAYLGSTIKNAVVTV 508
>AW720237
Length = 459
Score = 151 bits (382), Expect = 2e-37
Identities = 82/144 (56%), Positives = 96/144 (65%), Gaps = 22/144 (15%)
Frame = +3
Query: 6 EGVAIGIDLGTTYSCVGVWHEQNDRVEIIHNDQGNRTTPSCVAFTNSQRLIGDAAKNQAA 65
+ AIGIDLGTTYSCVGVW NDRVEII NDQGNRTTPS V FT S+RLIGDAAKNQ A
Sbjct: 33 QATAIGIDLGTTYSCVGVW--MNDRVEIIANDQGNRTTPSYVGFTESERLIGDAAKNQVA 206
Query: 66 TNPSNTIF----------------------AFKVIAGTNDKPTIVVNYKGEEKRFVAEEI 103
NP NT+F FKV AG + KP I V YKGE K+F AE++
Sbjct: 207 RNPINTVFDAKRLIGRKFDDPIVQKDIKLWPFKVEAGPDGKPLIAVKYKGETKKFHAEQV 386
Query: 104 SSVILSKMREIAEAFLQTPVKNAV 127
SS++L+KM+E AEA+L +K+ V
Sbjct: 387 SSMVLTKMKETAEAYLNKTIKDIV 458
>BP041494
Length = 572
Score = 136 bits (343), Expect = 6e-33
Identities = 71/116 (61%), Positives = 90/116 (77%)
Frame = +3
Query: 46 CVAFTNSQRLIGDAAKNQAATNPSNTIFAFKVIAGTNDKPTIVVNYKGEEKRFVAEEISS 105
C +++RLIG + + + ++ FKVI+G D+P IVVNYK EEK+F AEEISS
Sbjct: 228 CRQEPDAKRLIGRKFSDDSVESDMK-LWPFKVISGPVDRPMIVVNYKNEEKQFTAEEISS 404
Query: 106 VILSKMREIAEAFLQTPVKNAVISVPAYFNDSQRRATKDAGAIAGLNVMQIINEPT 161
++L KMREIAEA+L + VKN V++VPAYFNDSQR+ATKDAG IAGLNVM+IINEPT
Sbjct: 405 MVLIKMREIAEAYLGSTVKNVVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPT 572
Score = 96.3 bits (238), Expect = 9e-21
Identities = 49/58 (84%), Positives = 51/58 (87%)
Frame = +1
Query: 6 EGVAIGIDLGTTYSCVGVWHEQNDRVEIIHNDQGNRTTPSCVAFTNSQRLIGDAAKNQ 63
E AIGIDLGTTYSCVGVW QNDRVEII NDQGNRTTPS VAFT+ +RLIGDAAKNQ
Sbjct: 76 ESPAIGIDLGTTYSCVGVW--QNDRVEIIPNDQGNRTTPSYVAFTDFERLIGDAAKNQ 243
>BP083571
Length = 423
Score = 127 bits (320), Expect = 3e-30
Identities = 60/72 (83%), Positives = 65/72 (89%)
Frame = +1
Query: 1 MEEKYEGVAIGIDLGTTYSCVGVWHEQNDRVEIIHNDQGNRTTPSCVAFTNSQRLIGDAA 60
M KYEG AIGIDLGTTYSCV VW EQNDR EIIHN+QGNRTTPS VAFT++QRLIGDAA
Sbjct: 145 MATKYEGPAIGIDLGTTYSCVAVWQEQNDRAEIIHNEQGNRTTPSFVAFTDTQRLIGDAA 324
Query: 61 KNQAATNPSNTI 72
KNQAATNP+NT+
Sbjct: 325 KNQAATNPTNTV 360
>CB827219
Length = 544
Score = 105 bits (261), Expect = 2e-23
Identities = 61/181 (33%), Positives = 99/181 (53%)
Frame = +3
Query: 169 LQKRANCVDKRNIFIFDLGGGTFDVSILTVKNNVFEVKATAGDTHLGGQDFDNIMVDHFV 228
L R V R + F++G G DV++ V ++KA AG T +GG+D M+ H +
Sbjct: 6 LLMRIWAVGVRKLLYFNMGAGYCDVAVTVTAGGVSQIKALAGST-IGGEDLLQNMMHHLL 182
Query: 229 KEFRNKYKEDISENSKALRRLRTACEKAKRTLSYDTDATIELDAIYKGIDFCSSITRAKF 288
+ N +K + K++ LR A A LS +++D + G+ I +F
Sbjct: 183 PDCENIFKNHGVKEIKSMGLLRVATLDAIHRLSSQKSVQVDVD-LGDGLKINKVIDCEEF 359
Query: 289 EEMNMNLFEKCMNTVNICLADAKMDKNSVDDVVLVGGSSRIPKVRQLLQEVFKGKELCKS 348
EE+N N+FEKC + + CL D+K++ V+DV++VGG S IP+V+ L+ + KGK+L +
Sbjct: 360 EEVNKNVFEKCESLIIQCLQDSKIEVEDVNDVIIVGGCSYIPRVKNLVTNICKGKKLYEG 539
Query: 349 I 349
I
Sbjct: 540 I 542
>TC18256 homologue to UP|Q9M4E8 (Q9M4E8) Heat shock protein 70, partial
(24%)
Length = 476
Score = 100 bits (248), Expect = 6e-22
Identities = 49/95 (51%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Frame = +3
Query: 324 GGSSRIPKVRQLLQEVFKGKELCKSINPDEAVAYGAVVQAALLS-EGSKNVPNLVLRDVT 382
GGS+RIPKV+QLL++ F+GKE K +NPDEAVAYGA VQ ++LS EG + +++L DV
Sbjct: 3 GGSTRIPKVQQLLKDYFEGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVA 182
Query: 383 PLSFGVSELGNLMSVMIPRNTSIPVTVEKTKTYYE 417
PL+ G+ +G +M+ +IPRNT IP + T Y+
Sbjct: 183 PLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQ 287
>AW163930
Length = 359
Score = 99.0 bits (245), Expect = 1e-21
Identities = 53/95 (55%), Positives = 69/95 (71%), Gaps = 1/95 (1%)
Frame = +1
Query: 340 FKGKELCKSINPDEAVAYGAVVQAALLS-EGSKNVPNLVLRDVTPLSFGVSELGNLMSVM 398
F GKELCKSINPDEAVAYGA VQAA+LS EG++ V +L+L DVTPLS G+ G +M+V+
Sbjct: 43 FNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVL 222
Query: 399 IPRNTSIPVTVEKTKTYYECYDYYNKYSVTVKVYQ 433
IPRNT+IP E+ + Y N+ V ++VY+
Sbjct: 223 IPRNTTIPTKKEQVFSTYS----DNQPGVLIQVYE 315
>AV769455
Length = 556
Score = 89.4 bits (220), Expect = 1e-18
Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = +1
Query: 75 FKVIAGTNDKPTIVVNYKGEEKRFVAEEISSVILSKMREIAEAFLQTPVKNAVISVPAYF 134
F V G + P I Y GE + F ++ ++LS ++EIA+ L V + I +P YF
Sbjct: 127 FAVTEGPDGFPLIHARYLGETRTFTPTQVFGMMLSNLKEIAQKNLNAAVVDCCIGIPIYF 306
Query: 135 NDSQRRATKDAGAIAGLNVMQIINEPTAAALAYGLQKR-ANCVDKRNIFIFDLGGGTFDV 193
D QRRA DA IAGL+ +++ +E TA ALAYG+ K D N+ D+G + V
Sbjct: 307 TDLQRRAVLDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDPLNVAFVDVGHASMQV 486
Query: 194 SILTVKNNVFEVKATAGDTHLGG 216
I K +V A + D LGG
Sbjct: 487 CIAGYKKGQLKVLAHSYDRSLGG 555
>AV409958
Length = 389
Score = 74.3 bits (181), Expect = 4e-14
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Frame = +2
Query: 223 MVDHFVKEFRNKYKEDISENSKALRRLRTACEKAKRTLSYDTDATIELDAIYKGID---- 278
+VD +F+ D+ ++ +AL+RL EKAK LS T I L I D
Sbjct: 5 IVDWLAADFKRNEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKH 184
Query: 279 FCSSITRAKFEEMNMNLFEKCMNTVNICLADAKMDKNSVDDVVLVGGSSRIPKVRQLLQE 338
+++TRAKFEE+ +L ++ V L DAK+ +D+V+LVGGS+RIP V++L+++
Sbjct: 185 IETTLTRAKFEELCSDLLDRLRTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKK 364
Query: 339 V 339
+
Sbjct: 365 M 367
>AV428240
Length = 342
Score = 73.6 bits (179), Expect = 6e-14
Identities = 37/105 (35%), Positives = 61/105 (57%)
Frame = +2
Query: 194 SILTVKNNVFEVKATAGDTHLGGQDFDNIMVDHFVKEFRNKYKEDISENSKALRRLRTAC 253
SI + ++ + A D LGG+DFD ++ HF ++F+ +Y D+ N +A RLR AC
Sbjct: 2 SIAAFEFGQVKILSHAFDMSLGGRDFDEVLFCHFAEKFKEQYGIDVYSNVRACIRLRAAC 181
Query: 254 EKAKRTLSYDTDATIELDAIYKGIDFCSSITRAKFEEMNMNLFEK 298
EK K+ LS + +A + ++ + ID ITR +FE++ L +K
Sbjct: 182 EKLKKVLSANAEAPLTIECLMDEIDVKGFITREEFEKLASGLVKK 316
>AW428869
Length = 181
Score = 71.2 bits (173), Expect = 3e-13
Identities = 32/52 (61%), Positives = 40/52 (76%)
Frame = +1
Query: 181 IFIFDLGGGTFDVSILTVKNNVFEVKATAGDTHLGGQDFDNIMVDHFVKEFR 232
I +FDLGGGTFDVS+L V + VFEV +T+GDTHLGG DFD +VD +F+
Sbjct: 22 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAADFK 177
>AV412686
Length = 166
Score = 68.9 bits (167), Expect = 2e-12
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +2
Query: 210 GDTHLGGQDFDNIMVDHFVKEFRNKYKEDISENSKALRRLRTACEKAKRTLS 261
GDT+LGG DFDN +V+ V F+ K+ +DI+EN K+LRRLR ACEKAKR LS
Sbjct: 2 GDTYLGGVDFDNNLVNFLVDFFQRKHNKDITENVKSLRRLRLACEKAKRILS 157
>AV427312
Length = 164
Score = 53.1 bits (126), Expect = 9e-08
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = +2
Query: 248 RLRTACEKAKRTLSYDTDATIELDAIYKGIDFCSSITRAKFEEMNMNLFEKCM 300
+LR EKAKR LS T +E+++++ G D ++TRA+FEE+N +LF K +
Sbjct: 5 KLRREVEKAKRALSSQTQVRVEIESLFDGQDLSETLTRARFEELNSDLFRKTL 163
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,588,024
Number of Sequences: 28460
Number of extensions: 60372
Number of successful extensions: 317
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of query: 433
length of database: 4,897,600
effective HSP length: 93
effective length of query: 340
effective length of database: 2,250,820
effective search space: 765278800
effective search space used: 765278800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144722.18