Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144720.2 + phase: 0 /pseudo
         (552 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16422 similar to PIR|T05653|T05653 amino acid transport protei...    64  6e-11
BP030795                                                               60  7e-10
AW720246                                                               44  5e-05
AV428014                                                               43  1e-04
AV409748                                                               43  2e-04
AV779312                                                               37  0.006
TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoa...    32  0.27
TC9745 similar to UP|V727_ARATH (Q9M376) Vesicle-associated memb...    31  0.46
TC14128 similar to AAS09980 (AAS09980) MYB transcription factor,...    30  0.78
TC18829 homologue to UP|Q8L4X4 (Q8L4X4) Amino acid permease-like...    30  0.78
BP066856                                                               30  1.0
TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precurso...    30  1.0
TC14369 similar to UP|Q8S3W1 (Q8S3W1) Elongation factor 1-gamma,...    30  1.0
AV407983                                                               30  1.3
AI967704                                                               29  1.7
BP054988                                                               29  2.3
TC13557 similar to AAQ62429 (AAQ62429) At4g12450, partial (27%)        29  2.3
AV418629                                                               29  2.3
TC10849 similar to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional a...    28  3.9
AU089408                                                               28  5.0

>TC16422 similar to PIR|T05653|T05653 amino acid transport protein homolog
           F22I13.20 - Arabidopsis                thaliana
           {Arabidopsis thaliana;}, partial (38%)
          Length = 685

 Score = 63.9 bits (154), Expect = 6e-11
 Identities = 63/208 (30%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
 Frame = +2

Query: 115 EEKHQRRSSHTLLPPLSRRSS-LLKKESKVSHEVPSRHCSFGQAVLNGINVLCGVGILST 173
           +++ +  SS   LPP  R  + LL K   +S    S+  +F    ++    + G G+L  
Sbjct: 92  QKEPEAGSSSYSLPPYPREDTPLLSKSPPLS----SKFKTFANIFIS----IVGAGVLGL 247

Query: 174 PYAAKEGGWL-GLSILFIFGILSFYTGLLL---RSCLDSEPG---LETYPDIGQAAFGTA 226
           PY  K  GWL GL +LF    L+++  +LL   R  LDS  G   L ++ D+G A  G  
Sbjct: 248 PYCFKRTGWLTGLIMLFTVAFLTYHCMMLLVSTRRKLDSLTGYSKLGSFGDLGFAICGPL 427

Query: 227 GRIAISIVLYVELYGCCIEYIILEGDNLASLFPNAYLNLGGI--ELNPQTL-----FAVV 279
           GR+A+  ++ +   G C+ Y+I     L  L  NA  +   +   L P+ L     F   
Sbjct: 428 GRLAVDAMIVLSQAGFCVSYLIFIATTLGFLTSNAAGDTVPVFLGLTPKVLFLWGWFPFQ 607

Query: 280 AALAVLPTVWLRDLSVLSYISAGGVIAS 307
             L  +PT  L  L+ LS  +  G +AS
Sbjct: 608 LGLNSIPT--LTHLAPLSIFADAGDLAS 685


>BP030795 
          Length = 492

 Score = 60.5 bits (145), Expect = 7e-10
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
 Frame = -3

Query: 410 ATKIAVWTTVVNPFTKYALTISPVAMSLEELIPANHAKSYLFSIFIRTGLVFSTLVIGLS 469
           +++IA++TT+VNP +KY L  +P+  +L++L+P  +  S +  I +   LV ST+++ L+
Sbjct: 490 SSRIAIYTTLVNPISKYVLMTTPITNALKDLLPRGY-NSKVTDIIVSAILVMSTVIVALA 314

Query: 470 VPFF---VALCYGKLAITCLII---LCRFGDVLDWIITYNACNFD---IAMCLLPKNLAG 520
           VPFF   ++L    L++T  I+   LC     L     YN   F+   I + LL     G
Sbjct: 313 VPFFGYLMSLVGALLSVTASILLPCLC----YLKISCNYNKFRFETITIVVILLSGIAIG 146

Query: 521 KSNANTGRTLHYNHCSRRC 539
            S          +H S RC
Sbjct: 145 MSGTYMSLNKIVHHMS*RC 89


>AW720246 
          Length = 445

 Score = 44.3 bits (103), Expect = 5e-05
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
 Frame = +3

Query: 162 INVLCGVGILSTPYAAKEGGWL-GLSILFIFGILSFYTGLLLRSCL---DSEPGLE--TY 215
           I  + G G+LS  ++  + GW+ G  ++  F +++ YT  +L  C    DS  G    T+
Sbjct: 96  ITAVVGSGVLSLAWSIAQMGWIAGPGVMIFFSVVALYTSSILAECYRCGDSHFGKRNYTF 275

Query: 216 PDIGQAAFGTAGRIAISIVLYVELYGCCIEYIILEGDNLASLFPNAYLNLGGIE 269
            D  Q   G        IV Y+ L+G  I Y I    +L  +  +  L+  G E
Sbjct: 276 MDAVQNILGGFSVTICGIVQYLNLFGSAIGYTIAASMSLIEIRKSFCLHSSGGE 437


>AV428014 
          Length = 428

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
 Frame = +3

Query: 162 INVLCGVGILSTPYAAKEGGWL-GLSILFIFGILSFYTGLLLRSCLDSEPGLE-----TY 215
           I  + G G+LS  +A  + GW+ G ++L  F  ++++T  LL  C  S   +      TY
Sbjct: 66  ITAVIGSGVLSLAWAIAQMGWVAGPAVLLAFSFITYFTSTLLADCYRSPDPVHGKRNYTY 245

Query: 216 PDIGQAAFGTAGRIAISIVLYVELYGCCIEYII 248
            ++ +A  G        +  YV L G  I Y I
Sbjct: 246 SEVVRAVLGGRKFQLCGLAQYVNLVGVTIGYTI 344


>AV409748 
          Length = 417

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 29/103 (28%), Positives = 45/103 (43%)
 Frame = +2

Query: 153 SFGQAVLNGINVLCGVGILSTPYAAKEGGWLGLSILFIFGILSFYTGLLLRSCLDSEPGL 212
           SF  +V N    + G GI++ P A K  G        IF      T L +          
Sbjct: 98  SFTGSVFNLSTTIIGAGIMALPAAIKVLGVAAGIAAIIFLAFLTETSLDILMRFSRVGNA 277

Query: 213 ETYPDIGQAAFGTAGRIAISIVLYVELYGCCIEYIILEGDNLA 255
            +Y D+   AFG  GR+ + I + +  +G  + Y+I+ GD L+
Sbjct: 278 RSYGDVMGYAFGWVGRLVLQISVLINNFGILVVYVIIIGDVLS 406


>AV779312 
          Length = 345

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 148 PSRHCSFGQAVLNGINVLCGVGILSTPYAAKEGGW-LGLSILFIFGILSFYTGLLLRSCL 206
           P R  +   A  + I  + G G+LS  +A  + GW LG+S + IF  ++ YT  LL  C 
Sbjct: 90  PKRTGTVWTACAHIITAVIGAGVLSLAWAMAQLGWILGVSCILIFAGVTLYTSNLLADCY 269

Query: 207 DS 208
            S
Sbjct: 270 RS 275


>TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
           (Centromere protein B) (CENP-B), partial (4%)
          Length = 756

 Score = 32.0 bits (71), Expect = 0.27
 Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 20/105 (19%)
 Frame = +1

Query: 29  GNDSDSSNYSNENPPQRKQSSYNPS------W---PQSYRQSIDLYSSV--------PSP 71
           G+ S SS+ S+ + P    +S +PS      W   P S   S   +SS         PS 
Sbjct: 232 GSSSSSSSSSSSSSPSSASTSSSPSLSFSISWNLLPSSSPGSARAFSSTGSTEVVSAPSS 411

Query: 72  SIGFLGNSSLTRLS---SSFLSTSLTRRHTPEVLPSVTKPLIQPT 113
            I  LGN +LT LS   S+  +     R  P  L S T   +  T
Sbjct: 412 PITSLGNGNLTTLSSENSTVFAVETCSRDVPWTLSSATPDEVSMT 546


>TC9745 similar to UP|V727_ARATH (Q9M376) Vesicle-associated membrane
           protein 727 (AtVAMP727), partial (70%)
          Length = 721

 Score = 31.2 bits (69), Expect = 0.46
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
 Frame = +3

Query: 408 LVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPANHAK------SYLFSIFIRTGLVF 461
           L+ + +A  T V+   T+Y    S +A+   + +P+N +K       + F+  +  G VF
Sbjct: 228 LIYSFVAKGTVVLAEHTQYTGNFSTIAVQCLQKLPSNSSKYTYSCDGHTFNFLLDNGFVF 407

Query: 462 STLV---IGLSVPF 472
             +    +G SVPF
Sbjct: 408 LVVADESVGRSVPF 449


>TC14128 similar to AAS09980 (AAS09980) MYB transcription factor, partial
           (36%)
          Length = 423

 Score = 30.4 bits (67), Expect = 0.78
 Identities = 19/51 (37%), Positives = 25/51 (48%), Gaps = 7/51 (13%)
 Frame = +2

Query: 82  TRLSSSFLSTSLTRRHTPEVLPSVTKPLI-------QPTEEEKHQRRSSHT 125
           T  S+S L+T LT ++TP   P  TKPL+        PT  E    R  +T
Sbjct: 131 TSPSTSTLTTPLTTKNTPPATPPPTKPLLPSPSSSPTPTASEGFHGRRKNT 283


>TC18829 homologue to UP|Q8L4X4 (Q8L4X4) Amino acid permease-like protein,
           partial (27%)
          Length = 713

 Score = 30.4 bits (67), Expect = 0.78
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 165 LCGVGILSTPYAAKEGGW-LGLSILFIFGILSFYTGLLLRSCLD 207
           + G  IL+ PYA +  GW LG   L + G ++FY   L+   L+
Sbjct: 214 IVGPTILTLPYAFRGLGWVLGFVCLTVMGAVTFYAYFLMSKVLE 345


>BP066856 
          Length = 485

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 96  RHTPEVLPSVTKPLIQPTEEEKHQRRSSHTLLPPLSRRSSLLKKESKVSHEV 147
           RH+ E+LP    P+I+  E   H     H +L  LSR SS     ++V H+V
Sbjct: 326 RHSTELLP----PIIRDDEPMGHTAIPPHVILHXLSRISSRDPPRAQVRHKV 469


>TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precursor  (Atperox
           P31) (ATP41) , partial (38%)
          Length = 475

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +2

Query: 55  PQSYRQSIDLYSSVPSPSIGFLGNSSLTRLSSSFLSTSLTRRHTPEVLPSVTKPLIQPTE 114
           P S    I +  ++P P    + +  LTR +     T L + H P +LP+  +   Q T 
Sbjct: 17  PSSNNGIITIIITLPPPLNTLILHHPLTRATH----TRLLQTHVPTILPNHPRHRHQQTN 184

Query: 115 EEKHQRRSSHTLLPP 129
              H R      LPP
Sbjct: 185 HHPHHRPRHAPPLPP 229


>TC14369 similar to UP|Q8S3W1 (Q8S3W1) Elongation factor 1-gamma, complete
          Length = 1710

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -2

Query: 252  DNLASLFPNAYLNLGGIE-LNPQTLFAV----VAALAVLPTVWLRDLSVLSYISAGGVIA 306
            D + S+FPNAYL    I   NP TLF V    V +L  L +   R+    SY+S   +IA
Sbjct: 1193 DPITSIFPNAYLRAKSIR*RNPPTLFNVTKETVFSLLYL*SQNHREYPSGSYMSQNPLIA 1014

Query: 307  S 307
            +
Sbjct: 1013 T 1011


>AV407983 
          Length = 417

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 27/94 (28%), Positives = 39/94 (40%)
 Frame = +1

Query: 43  PQRKQSSYNPSWPQSYRQSIDLYSSVPSPSIGFLGNSSLTRLSSSFLSTSLTRRHTPEVL 102
           P R++  Y+ +   S   S    +S+PSP      NSS    ++S +S S +  H+P   
Sbjct: 64  PNRRRHRYSATSRASTSASPS--TSIPSPHPS-PQNSSSAS*NTSPISASSSPSHSPSSS 234

Query: 103 PSVTKPLIQPTEEEKHQRRSSHTLLPPLSRRSSL 136
           P +  PL  PT         S T     S   SL
Sbjct: 235 PPLLPPLSAPTSSSLSSSAPSSTSSSSASSNPSL 336


>AI967704 
          Length = 385

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 15/52 (28%), Positives = 23/52 (43%)
 Frame = +2

Query: 344 GYCYSGHAVFPNIYTSMAKPNQFPAVLVACFGVCTLLYAGGAVMGYKMFGED 395
           G   + H   P +       ++FP +L   F   TL+Y    + GY  FGE+
Sbjct: 230 GKSLNRHPPSPELKEQQKDRSKFPKLLAQTFSGITLVYILFGLCGYMAFGEE 385


>BP054988 
          Length = 442

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = -3

Query: 15  SDEEDDKDFNKGDDGNDSDSSN 36
           SDE+DD D  + DD  DSD +N
Sbjct: 176 SDEDDDHDDEEDDDDGDSDYAN 111


>TC13557 similar to AAQ62429 (AAQ62429) At4g12450, partial (27%)
          Length = 538

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = +3

Query: 445 HAKSYLFSIFIRTGLVFSTLVIGLSVPFFVA 475
           + K + F+IF    L+F  L+I  S+ FFVA
Sbjct: 330 NGKCFFFNIFFYVSLIFLKLLIYFSLEFFVA 422


>AV418629 
          Length = 385

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 12/38 (31%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
 Frame = +3

Query: 162 INVLCGVGILSTPYAAKEGGWL-GLSILFIFGILSFYT 198
           I  + G G+LS  +A  + GW+ G +++ +F +++ YT
Sbjct: 261 ITAVIGSGVLSLAWAIAQLGWVAGPAVMLLFSLVTVYT 374


>TC10849 similar to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional
           aspartokinase  (Aspartate kinase) , partial (43%)
          Length = 902

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 112 PTEEEKHQRRSSH--TLLPPLSRRSSLLKKESKVSHEVPSRHCS 153
           P + ++  R SS   +    L RRS    + S+ SH  PS+HC+
Sbjct: 280 PQKPQRTHRTSSRK*SSFHSLRRRSHRPSRASRASHSSPSQHCT 149


>AU089408 
          Length = 522

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 252 DNLASLFPNAYLNLGGIE-LNPQTLFAVVAALAVLPTVWLRDLSVLSYISAGGVIAS 307
           D L +L P+A      +E LN   LFA+V    +L  +WL   S+L  +  GG   S
Sbjct: 278 DKLPNLNPSASKIKWPVESLNFYKLFAIVGVFRLLSHIWLLCPSLLFLLFLGGFSGS 108


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,102,420
Number of Sequences: 28460
Number of extensions: 179505
Number of successful extensions: 1180
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of query: 552
length of database: 4,897,600
effective HSP length: 95
effective length of query: 457
effective length of database: 2,193,900
effective search space: 1002612300
effective search space used: 1002612300
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)


Medicago: description of AC144720.2