
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144720.2 + phase: 0 /pseudo
(552 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16422 similar to PIR|T05653|T05653 amino acid transport protei... 64 6e-11
BP030795 60 7e-10
AW720246 44 5e-05
AV428014 43 1e-04
AV409748 43 2e-04
AV779312 37 0.006
TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoa... 32 0.27
TC9745 similar to UP|V727_ARATH (Q9M376) Vesicle-associated memb... 31 0.46
TC14128 similar to AAS09980 (AAS09980) MYB transcription factor,... 30 0.78
TC18829 homologue to UP|Q8L4X4 (Q8L4X4) Amino acid permease-like... 30 0.78
BP066856 30 1.0
TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precurso... 30 1.0
TC14369 similar to UP|Q8S3W1 (Q8S3W1) Elongation factor 1-gamma,... 30 1.0
AV407983 30 1.3
AI967704 29 1.7
BP054988 29 2.3
TC13557 similar to AAQ62429 (AAQ62429) At4g12450, partial (27%) 29 2.3
AV418629 29 2.3
TC10849 similar to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional a... 28 3.9
AU089408 28 5.0
>TC16422 similar to PIR|T05653|T05653 amino acid transport protein homolog
F22I13.20 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (38%)
Length = 685
Score = 63.9 bits (154), Expect = 6e-11
Identities = 63/208 (30%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Frame = +2
Query: 115 EEKHQRRSSHTLLPPLSRRSS-LLKKESKVSHEVPSRHCSFGQAVLNGINVLCGVGILST 173
+++ + SS LPP R + LL K +S S+ +F ++ + G G+L
Sbjct: 92 QKEPEAGSSSYSLPPYPREDTPLLSKSPPLS----SKFKTFANIFIS----IVGAGVLGL 247
Query: 174 PYAAKEGGWL-GLSILFIFGILSFYTGLLL---RSCLDSEPG---LETYPDIGQAAFGTA 226
PY K GWL GL +LF L+++ +LL R LDS G L ++ D+G A G
Sbjct: 248 PYCFKRTGWLTGLIMLFTVAFLTYHCMMLLVSTRRKLDSLTGYSKLGSFGDLGFAICGPL 427
Query: 227 GRIAISIVLYVELYGCCIEYIILEGDNLASLFPNAYLNLGGI--ELNPQTL-----FAVV 279
GR+A+ ++ + G C+ Y+I L L NA + + L P+ L F
Sbjct: 428 GRLAVDAMIVLSQAGFCVSYLIFIATTLGFLTSNAAGDTVPVFLGLTPKVLFLWGWFPFQ 607
Query: 280 AALAVLPTVWLRDLSVLSYISAGGVIAS 307
L +PT L L+ LS + G +AS
Sbjct: 608 LGLNSIPT--LTHLAPLSIFADAGDLAS 685
>BP030795
Length = 492
Score = 60.5 bits (145), Expect = 7e-10
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
Frame = -3
Query: 410 ATKIAVWTTVVNPFTKYALTISPVAMSLEELIPANHAKSYLFSIFIRTGLVFSTLVIGLS 469
+++IA++TT+VNP +KY L +P+ +L++L+P + S + I + LV ST+++ L+
Sbjct: 490 SSRIAIYTTLVNPISKYVLMTTPITNALKDLLPRGY-NSKVTDIIVSAILVMSTVIVALA 314
Query: 470 VPFF---VALCYGKLAITCLII---LCRFGDVLDWIITYNACNFD---IAMCLLPKNLAG 520
VPFF ++L L++T I+ LC L YN F+ I + LL G
Sbjct: 313 VPFFGYLMSLVGALLSVTASILLPCLC----YLKISCNYNKFRFETITIVVILLSGIAIG 146
Query: 521 KSNANTGRTLHYNHCSRRC 539
S +H S RC
Sbjct: 145 MSGTYMSLNKIVHHMS*RC 89
>AW720246
Length = 445
Score = 44.3 bits (103), Expect = 5e-05
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Frame = +3
Query: 162 INVLCGVGILSTPYAAKEGGWL-GLSILFIFGILSFYTGLLLRSCL---DSEPGLE--TY 215
I + G G+LS ++ + GW+ G ++ F +++ YT +L C DS G T+
Sbjct: 96 ITAVVGSGVLSLAWSIAQMGWIAGPGVMIFFSVVALYTSSILAECYRCGDSHFGKRNYTF 275
Query: 216 PDIGQAAFGTAGRIAISIVLYVELYGCCIEYIILEGDNLASLFPNAYLNLGGIE 269
D Q G IV Y+ L+G I Y I +L + + L+ G E
Sbjct: 276 MDAVQNILGGFSVTICGIVQYLNLFGSAIGYTIAASMSLIEIRKSFCLHSSGGE 437
>AV428014
Length = 428
Score = 43.1 bits (100), Expect = 1e-04
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Frame = +3
Query: 162 INVLCGVGILSTPYAAKEGGWL-GLSILFIFGILSFYTGLLLRSCLDSEPGLE-----TY 215
I + G G+LS +A + GW+ G ++L F ++++T LL C S + TY
Sbjct: 66 ITAVIGSGVLSLAWAIAQMGWVAGPAVLLAFSFITYFTSTLLADCYRSPDPVHGKRNYTY 245
Query: 216 PDIGQAAFGTAGRIAISIVLYVELYGCCIEYII 248
++ +A G + YV L G I Y I
Sbjct: 246 SEVVRAVLGGRKFQLCGLAQYVNLVGVTIGYTI 344
>AV409748
Length = 417
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/103 (28%), Positives = 45/103 (43%)
Frame = +2
Query: 153 SFGQAVLNGINVLCGVGILSTPYAAKEGGWLGLSILFIFGILSFYTGLLLRSCLDSEPGL 212
SF +V N + G GI++ P A K G IF T L +
Sbjct: 98 SFTGSVFNLSTTIIGAGIMALPAAIKVLGVAAGIAAIIFLAFLTETSLDILMRFSRVGNA 277
Query: 213 ETYPDIGQAAFGTAGRIAISIVLYVELYGCCIEYIILEGDNLA 255
+Y D+ AFG GR+ + I + + +G + Y+I+ GD L+
Sbjct: 278 RSYGDVMGYAFGWVGRLVLQISVLINNFGILVVYVIIIGDVLS 406
>AV779312
Length = 345
Score = 37.4 bits (85), Expect = 0.006
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 148 PSRHCSFGQAVLNGINVLCGVGILSTPYAAKEGGW-LGLSILFIFGILSFYTGLLLRSCL 206
P R + A + I + G G+LS +A + GW LG+S + IF ++ YT LL C
Sbjct: 90 PKRTGTVWTACAHIITAVIGAGVLSLAWAMAQLGWILGVSCILIFAGVTLYTSNLLADCY 269
Query: 207 DS 208
S
Sbjct: 270 RS 275
>TC11308 similar to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (4%)
Length = 756
Score = 32.0 bits (71), Expect = 0.27
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 20/105 (19%)
Frame = +1
Query: 29 GNDSDSSNYSNENPPQRKQSSYNPS------W---PQSYRQSIDLYSSV--------PSP 71
G+ S SS+ S+ + P +S +PS W P S S +SS PS
Sbjct: 232 GSSSSSSSSSSSSSPSSASTSSSPSLSFSISWNLLPSSSPGSARAFSSTGSTEVVSAPSS 411
Query: 72 SIGFLGNSSLTRLS---SSFLSTSLTRRHTPEVLPSVTKPLIQPT 113
I LGN +LT LS S+ + R P L S T + T
Sbjct: 412 PITSLGNGNLTTLSSENSTVFAVETCSRDVPWTLSSATPDEVSMT 546
>TC9745 similar to UP|V727_ARATH (Q9M376) Vesicle-associated membrane
protein 727 (AtVAMP727), partial (70%)
Length = 721
Score = 31.2 bits (69), Expect = 0.46
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Frame = +3
Query: 408 LVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPANHAK------SYLFSIFIRTGLVF 461
L+ + +A T V+ T+Y S +A+ + +P+N +K + F+ + G VF
Sbjct: 228 LIYSFVAKGTVVLAEHTQYTGNFSTIAVQCLQKLPSNSSKYTYSCDGHTFNFLLDNGFVF 407
Query: 462 STLV---IGLSVPF 472
+ +G SVPF
Sbjct: 408 LVVADESVGRSVPF 449
>TC14128 similar to AAS09980 (AAS09980) MYB transcription factor, partial
(36%)
Length = 423
Score = 30.4 bits (67), Expect = 0.78
Identities = 19/51 (37%), Positives = 25/51 (48%), Gaps = 7/51 (13%)
Frame = +2
Query: 82 TRLSSSFLSTSLTRRHTPEVLPSVTKPLI-------QPTEEEKHQRRSSHT 125
T S+S L+T LT ++TP P TKPL+ PT E R +T
Sbjct: 131 TSPSTSTLTTPLTTKNTPPATPPPTKPLLPSPSSSPTPTASEGFHGRRKNT 283
>TC18829 homologue to UP|Q8L4X4 (Q8L4X4) Amino acid permease-like protein,
partial (27%)
Length = 713
Score = 30.4 bits (67), Expect = 0.78
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 165 LCGVGILSTPYAAKEGGW-LGLSILFIFGILSFYTGLLLRSCLD 207
+ G IL+ PYA + GW LG L + G ++FY L+ L+
Sbjct: 214 IVGPTILTLPYAFRGLGWVLGFVCLTVMGAVTFYAYFLMSKVLE 345
>BP066856
Length = 485
Score = 30.0 bits (66), Expect = 1.0
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 96 RHTPEVLPSVTKPLIQPTEEEKHQRRSSHTLLPPLSRRSSLLKKESKVSHEV 147
RH+ E+LP P+I+ E H H +L LSR SS ++V H+V
Sbjct: 326 RHSTELLP----PIIRDDEPMGHTAIPPHVILHXLSRISSRDPPRAQVRHKV 469
>TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precursor (Atperox
P31) (ATP41) , partial (38%)
Length = 475
Score = 30.0 bits (66), Expect = 1.0
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +2
Query: 55 PQSYRQSIDLYSSVPSPSIGFLGNSSLTRLSSSFLSTSLTRRHTPEVLPSVTKPLIQPTE 114
P S I + ++P P + + LTR + T L + H P +LP+ + Q T
Sbjct: 17 PSSNNGIITIIITLPPPLNTLILHHPLTRATH----TRLLQTHVPTILPNHPRHRHQQTN 184
Query: 115 EEKHQRRSSHTLLPP 129
H R LPP
Sbjct: 185 HHPHHRPRHAPPLPP 229
>TC14369 similar to UP|Q8S3W1 (Q8S3W1) Elongation factor 1-gamma, complete
Length = 1710
Score = 30.0 bits (66), Expect = 1.0
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = -2
Query: 252 DNLASLFPNAYLNLGGIE-LNPQTLFAV----VAALAVLPTVWLRDLSVLSYISAGGVIA 306
D + S+FPNAYL I NP TLF V V +L L + R+ SY+S +IA
Sbjct: 1193 DPITSIFPNAYLRAKSIR*RNPPTLFNVTKETVFSLLYL*SQNHREYPSGSYMSQNPLIA 1014
Query: 307 S 307
+
Sbjct: 1013 T 1011
>AV407983
Length = 417
Score = 29.6 bits (65), Expect = 1.3
Identities = 27/94 (28%), Positives = 39/94 (40%)
Frame = +1
Query: 43 PQRKQSSYNPSWPQSYRQSIDLYSSVPSPSIGFLGNSSLTRLSSSFLSTSLTRRHTPEVL 102
P R++ Y+ + S S +S+PSP NSS ++S +S S + H+P
Sbjct: 64 PNRRRHRYSATSRASTSASPS--TSIPSPHPS-PQNSSSAS*NTSPISASSSPSHSPSSS 234
Query: 103 PSVTKPLIQPTEEEKHQRRSSHTLLPPLSRRSSL 136
P + PL PT S T S SL
Sbjct: 235 PPLLPPLSAPTSSSLSSSAPSSTSSSSASSNPSL 336
>AI967704
Length = 385
Score = 29.3 bits (64), Expect = 1.7
Identities = 15/52 (28%), Positives = 23/52 (43%)
Frame = +2
Query: 344 GYCYSGHAVFPNIYTSMAKPNQFPAVLVACFGVCTLLYAGGAVMGYKMFGED 395
G + H P + ++FP +L F TL+Y + GY FGE+
Sbjct: 230 GKSLNRHPPSPELKEQQKDRSKFPKLLAQTFSGITLVYILFGLCGYMAFGEE 385
>BP054988
Length = 442
Score = 28.9 bits (63), Expect = 2.3
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = -3
Query: 15 SDEEDDKDFNKGDDGNDSDSSN 36
SDE+DD D + DD DSD +N
Sbjct: 176 SDEDDDHDDEEDDDDGDSDYAN 111
>TC13557 similar to AAQ62429 (AAQ62429) At4g12450, partial (27%)
Length = 538
Score = 28.9 bits (63), Expect = 2.3
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = +3
Query: 445 HAKSYLFSIFIRTGLVFSTLVIGLSVPFFVA 475
+ K + F+IF L+F L+I S+ FFVA
Sbjct: 330 NGKCFFFNIFFYVSLIFLKLLIYFSLEFFVA 422
>AV418629
Length = 385
Score = 28.9 bits (63), Expect = 2.3
Identities = 12/38 (31%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Frame = +3
Query: 162 INVLCGVGILSTPYAAKEGGWL-GLSILFIFGILSFYT 198
I + G G+LS +A + GW+ G +++ +F +++ YT
Sbjct: 261 ITAVIGSGVLSLAWAIAQLGWVAGPAVMLLFSLVTVYT 374
>TC10849 similar to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional
aspartokinase (Aspartate kinase) , partial (43%)
Length = 902
Score = 28.1 bits (61), Expect = 3.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 112 PTEEEKHQRRSSH--TLLPPLSRRSSLLKKESKVSHEVPSRHCS 153
P + ++ R SS + L RRS + S+ SH PS+HC+
Sbjct: 280 PQKPQRTHRTSSRK*SSFHSLRRRSHRPSRASRASHSSPSQHCT 149
>AU089408
Length = 522
Score = 27.7 bits (60), Expect = 5.0
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 252 DNLASLFPNAYLNLGGIE-LNPQTLFAVVAALAVLPTVWLRDLSVLSYISAGGVIAS 307
D L +L P+A +E LN LFA+V +L +WL S+L + GG S
Sbjct: 278 DKLPNLNPSASKIKWPVESLNFYKLFAIVGVFRLLSHIWLLCPSLLFLLFLGGFSGS 108
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,102,420
Number of Sequences: 28460
Number of extensions: 179505
Number of successful extensions: 1180
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of query: 552
length of database: 4,897,600
effective HSP length: 95
effective length of query: 457
effective length of database: 2,193,900
effective search space: 1002612300
effective search space used: 1002612300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144720.2