TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144656.5 + phase: 0 /pseudo
         (2301 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662087                                                               38  0.016
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop...    35  0.17
TC16159 homologue to UP|Q94A23 (Q94A23) AT5g64310/MSJ1_15, parti...    34  0.23
TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fra...    31  2.5
TC19362                                                                30  3.3
TC11746 similar to UP|Q40983 (Q40983) Metalloendopeptidase , par...    30  4.2
AV781208                                                               29  7.2
TC11724 weakly similar to UP|Q9M1Q2 (Q9M1Q2) Serine/threonine pr...    29  7.2
TC10513 similar to GB|AAN15531.1|23198008|BT000212 expressed pro...    29  9.5
TC13523 homologue to UP|R1AD_ARATH (Q9FKC0) 60S ribosomal protei...    29  9.5

>BG662087 
          Length = 373

 Score = 38.1 bits (87), Expect = 0.016
 Identities = 34/113 (30%), Positives = 47/113 (41%)
 Frame = +3

Query: 1318 WQSQNVC*LP*P*QS*SKR*FPITSY*CTG*QHCKIQSVLPHGWFLRLQSDQDGARRQRE 1377
            W+  +V  L    Q   KR   I  Y  TG    +     P G  LRL  +QD   R  +
Sbjct: 15   WEMAHVGGLHGSEQGMPKRLLSIAKYRQTGGWSVRQ*VAKPDGCLLRLSPNQDAPIR*GQ 194

Query: 1378 DVFHHTLGHFLLQSNAVRFDQCRSYLSKGYDYYLSRHDTQRD*GLCG*HDRQV 1430
            +  H   G  LL  N+VR ++CR  +S      L     ++   L   HDR+V
Sbjct: 195  NGLHDRQGKLLLPDNSVRVEECRGDISTADG*GLX*PXGEKHGSLPRQHDRKV 353


>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
           (HRGP) (Fragment), partial (57%)
          Length = 941

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 32/102 (31%), Positives = 47/102 (45%), Gaps = 2/102 (1%)
 Frame = +2

Query: 38  HLLHLLSELRSKHLPLLSLNGQYVPTLRHTLLHNVPRLGSHLLLLAKYSVPLLVKLRCLL 97
           H LH  +     HLPLL  +        H +LH++P   +HL    ++ +PLL      +
Sbjct: 71  HHLHTTTNHLHHHLPLLPPHTTTNLPHHHHILHHLPTTTNHLHHHPRH-LPLLT-----I 232

Query: 98  LNMQLMFLRL--LRQFLKLL*HTQHLRFMLSRKITNPFSIQR 137
            N+  + L L  L    K+L H  HL F++    TNP   QR
Sbjct: 233 TNLPHLHLHLHRLHTTTKVLLH--HLPFLILPTTTNPLHHQR 352


>TC16159 homologue to UP|Q94A23 (Q94A23) AT5g64310/MSJ1_15, partial (19%)
          Length = 605

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 33/84 (39%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +3

Query: 40  LHLLSELRSKHLPLLSLNGQYVPTLR--HTLLHNVPRLGSHLLLLAKYSVPLLVKLRCLL 97
           LH L  LR +HL LL     Y+P  R  H L H       HLLLL   +V LL++    L
Sbjct: 123 LHRLC-LRPRHLWLLPRGNLYLPRQRFLHLLRHR-----RHLLLLRWRAVLLLLRPPSTL 284

Query: 98  LNMQLMFLRLLRQFLKLL*HTQHL 121
           L + LM L LL        H  HL
Sbjct: 285 LRLPLMLLLLLP-------HLSHL 335


>TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fragment),
           partial (6%)
          Length = 806

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 29/67 (43%), Positives = 37/67 (54%), Gaps = 3/67 (4%)
 Frame = -2

Query: 54  LSLNGQYVP--TLRHTLLHNVPRLGSHLLLLAKYSVPL-LVKLRCLLLNMQLMFLRLLRQ 110
           LSL     P  TL   L H+ P   +HLLLL +  + L L++LR LLL +QL  L LL+ 
Sbjct: 313 LSLRNHL*PPRTLNICLTHSCP---NHLLLLLRKLLML*LLQLRKLLLRLQLRELLLLKL 143

Query: 111 FLKLL*H 117
              LL H
Sbjct: 142 RELLLLH 122


>TC19362 
          Length = 513

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 36  PKHLLHLLSELRSKHLPLLSLNGQYVPTLRHTLLHNVPRLGSHLLLLAKY 85
           P H +H  S    +H P+ S   Q   +L     HN   L +H LLL+ +
Sbjct: 98  PHHHVHFFSSFNVRHTPITSSFSQAPFSLLQHHTHNPSSLKTHFLLLSPW 247


>TC11746 similar to UP|Q40983 (Q40983) Metalloendopeptidase , partial (3%)
          Length = 535

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 26/71 (36%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
 Frame = -1

Query: 29  KLRLMPKPKHLLHLLSELRSKHLPLLSLNGQYVPTLRH-TLLHNVPRLGSHLLLLAKYSV 87
           +L+L P    L     EL S  L LL++      TLR  + L + P + S+LLLL   S+
Sbjct: 475 RLQLQPLSPSL-----ELASPSLLLLTITATATVTLRQLSPLDSAPIVPSYLLLLHSPSL 311

Query: 88  PLLVKLRCLLL 98
           P + + RCL L
Sbjct: 310 PDVKEDRCLKL 278


>AV781208 
          Length = 524

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 1366 QSDQDGARRQREDVFHHTLGHFLLQSNAVRFDQ 1398
            QSD    + Q+ D FHH+L  F LQ   +RF Q
Sbjct: 184  QSDHPALQFQKHDDFHHSLTDF-LQHTVLRFQQ 279


>TC11724 weakly similar to UP|Q9M1Q2 (Q9M1Q2) Serine/threonine protein
            kinase-like protein, partial (20%)
          Length = 535

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 1366 QSDQDGARRQREDVFHHTLGHFLLQSNAVRFDQ 1398
            QSD    + Q+ D FHH+L  F LQ   +RF Q
Sbjct: 367  QSDHPALQFQKHDDFHHSLTDF-LQHTVLRFQQ 272


>TC10513 similar to GB|AAN15531.1|23198008|BT000212 expressed protein
           {Arabidopsis thaliana;}, partial (40%)
          Length = 647

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -2

Query: 651 VQYLILLRRQFLTSTMTL**KVVVKFQYHLCLL 683
           VQ++ILLR Q LTS  TL      K  +H CLL
Sbjct: 226 VQFVILLRSQSLTSRKTL------KSYHHACLL 146


>TC13523 homologue to UP|R1AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4,
           partial (52%)
          Length = 351

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -3

Query: 33  MPKPKHLLHLLSELRSKHLPLLSLNGQYVPTLRHTLLHNVPRLGSHLL 80
           +P+  H+LHLL +  ++H  LL+ N  +   +   L H+  +   H++
Sbjct: 220 LPEKPHVLHLLPDETTRHANLLTPNHHHFLAVEKLLRHDRSKPTQHVV 77


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.358    0.158    0.577 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,660,012
Number of Sequences: 28460
Number of extensions: 663679
Number of successful extensions: 7850
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5631
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 1880
Number of HSP's gapped (non-prelim): 6290
length of query: 2301
length of database: 4,897,600
effective HSP length: 105
effective length of query: 2196
effective length of database: 1,909,300
effective search space: 4192822800
effective search space used: 4192822800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 63 (28.9 bits)