TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144656.4 + phase: 0 
         (472 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV417777                                                               30  0.85
TC13812                                                                29  1.5
TC10016 homologue to UP|Q8LA73 (Q8LA73) Inorganic pyrophosphatas...    28  3.2
TC11188 similar to UP|Q84WI7 (Q84WI7) Expressed protein, partial...    28  3.2
AW719523                                                               28  4.2
TC8184 similar to UP|Q9LJQ4 (Q9LJQ4) Muconate cycloisomerase-lik...    27  5.5
TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imp...    27  7.2
TC17361                                                                27  9.4

>AV417777 
          Length = 402

 Score = 30.0 bits (66), Expect = 0.85
 Identities = 19/53 (35%), Positives = 30/53 (55%), Gaps = 2/53 (3%)
 Frame = -1

Query: 406 YRKKKQEYDTVKNLLDQQIQANCKEKNENARLKAS--IQRKEDFLDKICPGRK 456
           YR++++E  T + LL+Q  + NCK + EN    ++   Q+K    D I  GRK
Sbjct: 222 YREREREKWTYETLLEQLPRFNCKIQRENYAKTSTKCYQKKG*HRDNIQKGRK 64


>TC13812 
          Length = 401

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 354 DRANKWKMPYPRQRLVTSTVSAIPLPLP 381
           ++A+ W  PYP+QR     +  + LPLP
Sbjct: 12  EKASIWTQPYPKQRFFLLPLFFLSLPLP 95


>TC10016 homologue to UP|Q8LA73 (Q8LA73) Inorganic pyrophosphatase-like
           protein, partial (47%)
          Length = 448

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
 Frame = +1

Query: 95  PFHGLEPGPKIPAIANALHLEIA---DIKNKFITRAGL----------QCLPYNFLYQKA 141
           P+H LE GP+ P I N + +EIA    +K +   R GL             P+N+ +   
Sbjct: 220 PWHDLEIGPEAPKIFNCV-VEIAKGSKVKYELDKRTGLIKVDRVLYSSVVYPHNYGFIPR 396

Query: 142 TICFERSETD 151
           TIC +    D
Sbjct: 397 TICEDSDPID 426


>TC11188 similar to UP|Q84WI7 (Q84WI7) Expressed protein, partial (18%)
          Length = 523

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -3

Query: 212 CCAPLLHIWITSHLPRPKVKPEYL--PWSQKLMTLTPNDIVWFNPTCDPELIIDSC 265
           CC  L  + +T   P P VKP     P++   ++ T + I W   T  P + I  C
Sbjct: 224 CCENLGFVLLTCTFPIPSVKPSSSSPPFAGFTISPTASVISWTKSTITPSIPIICC 57


>AW719523 
          Length = 543

 Score = 27.7 bits (60), Expect = 4.2
 Identities = 20/55 (36%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
 Frame = +2

Query: 378 LPLPPESLEGYQKQLDIERRENSMWE-VKYRKKKQEYDTVKNLLDQQIQANCKEK 431
           LPL PE  +        E  E+  +E +KYR K +E    KNL   Q++   KEK
Sbjct: 350 LPLVPEVKQNSLSTKGFEPVEDINFEDIKYRDKSREKQRKKNL---QVKKEAKEK 505


>TC8184 similar to UP|Q9LJQ4 (Q9LJQ4) Muconate cycloisomerase-like protein,
           partial (17%)
          Length = 683

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = -1

Query: 212 CCAPLLHIWITSHLPRPKVKPEYLPWSQK-LMTLTP--NDIVW---FNPTCDPELI 261
           CC+ +L++W+   LP   V   +L + QK L T+    +  +W   F PTC   L+
Sbjct: 449 CCSRILYLWLLLLLPPANVTTPHLIFMQKALCTIIHLLHSSLWSLNF*PTCPFRLL 282


>TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (27%)
          Length = 711

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 16/65 (24%), Positives = 28/65 (42%)
 Frame = +3

Query: 338 GNRSVIAHEAYVKWVIDRANKWKMPYPRQRLVTSTVSAIPLPLPPESLEGYQKQLDIERR 397
           G   V  HE   KW +  A+    PYP    + S++         + LE Y+    +E R
Sbjct: 216 GAERVERHELLNKWRMRFASAGFTPYPLNSYINSSIK--------DLLESYRGHYTLEER 371

Query: 398 ENSMW 402
           + +++
Sbjct: 372 DGALF 386


>TC17361 
          Length = 398

 Score = 26.6 bits (57), Expect = 9.4
 Identities = 9/26 (34%), Positives = 16/26 (60%)
 Frame = +2

Query: 377 PLPLPPESLEGYQKQLDIERRENSMW 402
           PLP   E L GYQ+ +++   + ++W
Sbjct: 227 PLPFSTEWLPGYQESINLS*HDRNLW 304


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,811,186
Number of Sequences: 28460
Number of extensions: 136473
Number of successful extensions: 654
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of query: 472
length of database: 4,897,600
effective HSP length: 94
effective length of query: 378
effective length of database: 2,222,360
effective search space: 840052080
effective search space used: 840052080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)