BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144645.5 - phase: 0
(254 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV408163 159 4e-40
CN824947 152 4e-38
TC20215 similar to AAS10104 (AAS10104) MYB transcription factor,... 147 1e-36
NP675421 transcription factor MYB103 [Lotus japonicus] 147 2e-36
TC19713 homologue to UP|P93474 (P93474) Myb26, partial (55%) 145 5e-36
NP675423 transcription factor MYB101 [Lotus japonicus] 144 1e-35
AV766688 143 2e-35
TC10416 weakly similar to UP|O04108 (O04108) MYB factor, partial... 137 1e-33
AV421932 137 2e-33
AV413379 136 3e-33
TC11120 UP|Q84PP4 (Q84PP4) Transcription factor MYB102, complete 78 2e-30
CB828471 127 2e-30
AV417320 119 7e-28
TC8520 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucros... 104 1e-23
TC9457 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucros... 102 6e-23
TC17948 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucrose... 102 8e-23
TC18881 similar to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucrose... 97 3e-21
BI420780 86 8e-18
AV776018 67 4e-12
TC12503 homologue to UP|Q9ATD9 (Q9ATD9) BNLGHi233, partial (24%) 60 5e-10
>AV408163
Length = 425
Score = 159 bits (402), Expect = 4e-40
Identities = 71/116 (61%), Positives = 92/116 (79%), Gaps = 4/116 (3%)
Frame = +2
Query: 1 MVRSP----KEVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNY 56
M RSP +NKGAW++EEDD L Y+ HGEG W+ + + AGL RCGKSCR RW+NY
Sbjct: 77 MGRSPCCEKAHINKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 256
Query: 57 LKPGIKRGHISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKL 112
L+P +KRG+ + +E+++II+LH LLGN+WSLIA RLPGRTDNEIKNYWNT++ +KL
Sbjct: 257 LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 424
>CN824947
Length = 738
Score = 152 bits (385), Expect = 4e-38
Identities = 72/159 (45%), Positives = 104/159 (65%)
Frame = +1
Query: 8 VNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGHIS 67
+ +G W+ EED++L+KY+ GEG W+ + +NAGL RCGKSCR RW+NYL+ +KRG+IS
Sbjct: 184 LKRGRWTAEEDELLTKYIQASGEGSWRSLPKNAGLLRCGKSCRLRWINYLRGDLKRGNIS 363
Query: 68 TDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQPTSSSSLPSPSS 127
+EE +I++LH GNRWSLIA +PGRTDNEIKNYWN++LS+KL S+ + S
Sbjct: 364 DEEESLIVKLHASFGNRWSLIASHMPGRTDNEIKNYWNSHLSRKLVYTFRGST---TKSI 534
Query: 128 VSLRHNHGKCGHVAPEAPKPRRLKAVHQYKILEKNSGSE 166
V +CG + A K + ++ + +N+ E
Sbjct: 535 VDTPPKRRRCGRTSRWAMKKNKTYSLINNDLQNQNNELE 651
>TC20215 similar to AAS10104 (AAS10104) MYB transcription factor, partial
(35%)
Length = 464
Score = 147 bits (372), Expect = 1e-36
Identities = 61/105 (58%), Positives = 86/105 (81%)
Frame = +2
Query: 8 VNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGHIS 67
+ +G WS EED IL+ ++ +GEG W+ + +NAGL RCGKSCR RW+NYL+ +KRG+I+
Sbjct: 62 LKRGRWSEEEDKILTDFIKQNGEGSWKSLPKNAGLLRCGKSCRLRWINYLREDVKRGNIT 241
Query: 68 TDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKL 112
++EE++I++LH LGNRWS+IA LPGRTDNEIKNYWN++L +K+
Sbjct: 242 SEEEEIIVKLHAALGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKI 376
>NP675421 transcription factor MYB103 [Lotus japonicus]
Length = 924
Score = 147 bits (371), Expect = 2e-36
Identities = 68/117 (58%), Positives = 83/117 (70%), Gaps = 4/117 (3%)
Frame = +1
Query: 1 MVRSPK----EVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNY 56
M+R+P + KG WS+EED +L Y+ HG G W+ + Q AGL RCGKSCR RW NY
Sbjct: 1 MMRTPSIDESGMKKGPWSQEEDKVLVDYIQKHGHGSWRALPQLAGLNRCGKSCRLRWTNY 180
Query: 57 LKPGIKRGHISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQ 113
L+P IKRG S +EE +II LH LGN+W+ IA LPGRTDNEIKN WNT+L KKL+
Sbjct: 181 LRPDIKRGKFSDEEEQLIINLHASLGNKWATIASHLPGRTDNEIKNLWNTHLKKKLK 351
>TC19713 homologue to UP|P93474 (P93474) Myb26, partial (55%)
Length = 532
Score = 145 bits (367), Expect = 5e-36
Identities = 69/126 (54%), Positives = 88/126 (69%)
Frame = +3
Query: 7 EVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGHI 66
EV KG W+ EED IL Y+ HGEG W +A++AGLKR GKSCR RWLNYL+P ++RG+I
Sbjct: 102 EVRKGPWTIEEDLILINYIANHGEGVWNTLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNI 281
Query: 67 STDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQPTSSSSLPSPS 126
+ +E+ +I+ LH GNRWS IAK LPGRTDNEIKN+W T + K + KQ S S S
Sbjct: 282 TPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHI-KQAESLQQQQSSS 458
Query: 127 SVSLRH 132
++ H
Sbjct: 459 EINDHH 476
>NP675423 transcription factor MYB101 [Lotus japonicus]
Length = 1047
Score = 144 bits (363), Expect = 1e-35
Identities = 64/105 (60%), Positives = 78/105 (73%)
Frame = +1
Query: 8 VNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGHIS 67
+ KG W+ EED IL Y+ HG G W+ + + AGL RCGKSCR RW NYL+P IKRG +
Sbjct: 34 LKKGPWTPEEDAILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFT 213
Query: 68 TDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKL 112
+EE +II LH +LGN+WS IA LPGRTDNEIKN+WNT+L KKL
Sbjct: 214 EEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKL 348
>AV766688
Length = 608
Score = 143 bits (361), Expect = 2e-35
Identities = 68/134 (50%), Positives = 94/134 (69%), Gaps = 7/134 (5%)
Frame = +2
Query: 1 MVRSPK----EVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNY 56
M R+P + KG W+ EED L YV +G W+++ + AGL RCGKSCR RWLNY
Sbjct: 77 MARTPSCDKSGLRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNY 256
Query: 57 LKPGIKRGHISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQ- 115
L+P IKRGH + +EE++IIR+H+ LGNRWS+IA LPGRTDNE+KN+W+T+L +++Q+
Sbjct: 257 LRPDIKRGHFTQEEEEIIIRMHKNLGNRWSIIAAELPGRTDNEVKNHWHTSLKRRVQQNE 436
Query: 116 --PTSSSSLPSPSS 127
S+S P+S
Sbjct: 437 EAKVSNSKNEGPTS 478
>TC10416 weakly similar to UP|O04108 (O04108) MYB factor, partial (41%)
Length = 1046
Score = 137 bits (346), Expect = 1e-33
Identities = 63/121 (52%), Positives = 86/121 (71%), Gaps = 4/121 (3%)
Frame = +2
Query: 1 MVRSPK----EVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNY 56
M R+P + KG W+ EED L YV +G W+++ + AGL RCGKSCR RWLNY
Sbjct: 92 MARTPSCDKSGMRKGTWTAEEDKKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNY 271
Query: 57 LKPGIKRGHISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQP 116
L+P IKRG+ + +EE++IIR+H+ LGNRWS IA LPGRTD+E+KN+W+T L + + +Q
Sbjct: 272 LRPNIKRGNFTQEEEEIIIRMHKKLGNRWSTIAAELPGRTDSEVKNHWHTTLKRTVHEQN 451
Query: 117 T 117
T
Sbjct: 452 T 454
>AV421932
Length = 402
Score = 137 bits (345), Expect = 2e-33
Identities = 58/99 (58%), Positives = 76/99 (76%)
Frame = +3
Query: 6 KEVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGH 65
++V +G WS EED+ L +Y+ HG G W +V + AGL+RCGKSCR RW+NYL+P I+RG
Sbjct: 105 QKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGR 284
Query: 66 ISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYW 104
+ +EE +II LH ++GNRW+ IA LPGRTDNEIKNYW
Sbjct: 285 FTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYW 401
>AV413379
Length = 416
Score = 136 bits (343), Expect = 3e-33
Identities = 63/105 (60%), Positives = 80/105 (76%), Gaps = 4/105 (3%)
Frame = +3
Query: 1 MVRSP----KEVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNY 56
M RSP NKGAW++EEDD L Y+ HGEG W+ + ++AGL RCGKSCR RW+NY
Sbjct: 102 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKSAGLLRCGKSCRLRWINY 281
Query: 57 LKPGIKRGHISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIK 101
L+P +KRG+ + E+++II+LH LLGN+WSLIA RL GRTDNEIK
Sbjct: 282 LRPDLKRGNFTPQEDELIIKLHSLLGNKWSLIAGRLAGRTDNEIK 416
>TC11120 UP|Q84PP4 (Q84PP4) Transcription factor MYB102, complete
Length = 1281
Score = 78.2 bits (191), Expect(2) = 2e-30
Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Frame = +1
Query: 1 MVRSP----KEVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNY 56
M RSP + KG W+ EED L +++ HG G W+ + + AGL RCGKSCR RW NY
Sbjct: 67 MGRSPCCDENGLKKGPWTPEEDQKLVEHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 246
Query: 57 LKPGIKRGHISTDE 70
L+P IKRG S +E
Sbjct: 247 LRPDIKRGKFSPEE 288
Score = 70.5 bits (171), Expect(2) = 2e-30
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Frame = +2
Query: 64 GHISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKL----------Q 113
G+ +E I+ LH +LGN+WS IA LPGRTDNEIKN+WNT+L KKL Q
Sbjct: 269 GNFLQKKEQTILHLHSILGNKWSTIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQ 448
Query: 114 KQPTSSSSLPSPSSVS-----LRHNHGKCGHVAPEAPKPRRLKAVHQYKILEKNSGSEYD 168
+ S+LP +++ + HNH A + K + L + Q + YD
Sbjct: 449 PRTDLVSTLPYLLALANMTQLMDHNHQSFDEQAVQLAKLQYLNYLLQSSNNPLCMTNSYD 628
Query: 169 QGSDETSIADFFIDFDHQDQLMVGDDESNSKIPQMEDHKVSSTNSTHSSSSPSDH-CHLL 227
Q + A ++ + +G D S + S + +SS P H ++L
Sbjct: 629 QNALTNMEAFSLLNSISNVKENLGVDFSQM---DTQTSLFSHDGNNMASSQPLHHPSNML 799
Query: 228 AEKFDPQ 234
DPQ
Sbjct: 800 PHFLDPQ 820
>CB828471
Length = 525
Score = 127 bits (318), Expect = 2e-30
Identities = 73/167 (43%), Positives = 97/167 (57%), Gaps = 4/167 (2%)
Frame = +1
Query: 38 QNAGLKRCGKSCRQRWLNYLKPGIKRGHISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTD 97
+ AGL RCGKSCR RW NYL+P IKRG+ S +EED II LH LLGNRWS IA RLPGRTD
Sbjct: 4 KQAGLLRCGKSCRLRWANYLRPDIKRGNFSREEEDEIINLHELLGNRWSAIAARLPGRTD 183
Query: 98 NEIKNYWNTNLSKKLQKQPTSSSSLPSPSSVSLRHNHGKCGHVAPEAPK-PRRLKAVHQY 156
NEIKN W+T+L K+LQ Q T S + K H E P+ P++ + +
Sbjct: 184 NEIKNVWHTHLKKRLQPQ-TKQKQTNLDLDASKSNKDAKKEHQEDEGPRSPQQCSSSNSD 360
Query: 157 KI--LEKNSGSEYDQGSDETSIADFF-IDFDHQDQLMVGDDESNSKI 200
+ L +S D+ SI D ++FD + + D++ S++
Sbjct: 361 NMSSLTNSSSIAPSTNHDDMSINDVHNVNFDSLENSLALDEDFWSEV 501
>AV417320
Length = 369
Score = 119 bits (297), Expect = 7e-28
Identities = 53/97 (54%), Positives = 71/97 (72%), Gaps = 4/97 (4%)
Frame = +3
Query: 1 MVRSPK----EVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNY 56
MVR+P + KG W+ EED IL Y+ HG G W+ + ++AGL RCGKSCR RW+NY
Sbjct: 78 MVRAPCCEKIGLKKGPWTSEEDQILISYIQKHGHGNWRALPKHAGLLRCGKSCRLRWINY 257
Query: 57 LKPGIKRGHISTDEEDMIIRLHRLLGNRWSLIAKRLP 93
L+P IKRG+ + +EE++II++H LLGNRWS IA +LP
Sbjct: 258 LRPDIKRGNFTAEEEELIIKMHELLGNRWSAIAAKLP 368
>TC8520 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and
sucrose-responsive element binding factor, partial (36%)
Length = 1778
Score = 104 bits (260), Expect = 1e-23
Identities = 50/111 (45%), Positives = 67/111 (60%)
Frame = +1
Query: 1 MVRSPKEVNKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPG 60
M R + KG WS EED+ L K V HG W ++++ R GKSCR RW N L P
Sbjct: 157 MTRKEMDRIKGPWSPEEDEALQKLVERHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQ 333
Query: 61 IKRGHISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKK 111
++ + +E+D IIR H GN+W+ IA+ L GRTDN IKN+WN+ L +K
Sbjct: 334 VEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 486
Score = 32.7 bits (73), Expect = 0.062
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 63 RGHISTDEEDMIIRLHRLLGNR-WSLIAKRLPGRTDNEIKNYWNTNLSKKLQ 113
+G S +E++ + +L G R WSLI+K +PGR+ + W LS +++
Sbjct: 184 KGPWSPEEDEALQKLVERHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE 339
>TC9457 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and
sucrose-responsive element binding factor, partial (43%)
Length = 860
Score = 102 bits (254), Expect = 6e-23
Identities = 47/102 (46%), Positives = 64/102 (62%)
Frame = +3
Query: 10 KGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGHISTD 69
KG WS EED+ L + V HG W ++++ R GKSCR RW N L P ++ + +
Sbjct: 78 KGPWSPEEDEALQRLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTAE 254
Query: 70 EEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKK 111
E+D IIR H GN+W+ IA+ L GRTDN IKN+WN+ L +K
Sbjct: 255 EDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 380
Score = 33.9 bits (76), Expect = 0.028
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 63 RGHISTDEEDMIIRLHRLLGNR-WSLIAKRLPGRTDNEIKNYWNTNLSKKLQ 113
+G S +E++ + RL G R WSLI+K +PGR+ + W LS +++
Sbjct: 78 KGPWSPEEDEALQRLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE 233
>TC17948 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucrose-responsive
element binding factor, partial (50%)
Length = 487
Score = 102 bits (253), Expect = 8e-23
Identities = 47/103 (45%), Positives = 64/103 (61%)
Frame = +2
Query: 10 KGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGHISTD 69
KG WS EED IL++ V HG W +++ R GKSCR RW N L P ++ S
Sbjct: 170 KGPWSAEEDRILTRLVERHGARNWSLISRYIK-GRSGKSCRLRWCNQLSPTVEHRPFSVQ 346
Query: 70 EEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKL 112
E++ II H GNRW+ IA+ LPGRTDN +KN+WN+ L +++
Sbjct: 347 EDETIIAAHARFGNRWAAIARLLPGRTDNAVKNHWNSTLKRRV 475
>TC18881 similar to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucrose-responsive
element binding factor, partial (28%)
Length = 346
Score = 96.7 bits (239), Expect = 3e-21
Identities = 43/97 (44%), Positives = 62/97 (63%)
Frame = +1
Query: 10 KGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGHISTD 69
KG WS EED+ L++ V +HG W ++++ R GKSCR RW N L P ++ + +
Sbjct: 55 KGPWSPEEDEALTRLVQVHGPKNWTAISKSIP-GRSGKSCRLRWCNQLSPEVEHRPFTPE 231
Query: 70 EEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNT 106
E+ IIR H GN+W+ IA+ L GRTDN +KN+WN+
Sbjct: 232 EDSTIIRAHARCGNKWATIARILNGRTDNAVKNHWNS 342
>BI420780
Length = 475
Score = 85.5 bits (210), Expect = 8e-18
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Frame = +1
Query: 13 WSREEDDILSKYVVIHGEGKWQKVAQ--NAGLKRCGKSCRQRWLNYLKPGIKRGHISTDE 70
WS EED +L YV +G +W V+Q N L R KSC +RW NYLKPGIK+G ++ +E
Sbjct: 211 WSSEEDALLHAYVQQYGPREWNLVSQRMNTPLNRDTKSCLERWKNYLKPGIKKGSLTKEE 390
Query: 71 EDMIIRLHRLLGNRWSLIAKRLPGRT 96
+ ++I L GN+W IA +PGRT
Sbjct: 391 QRLVILLQANYGNKWKKIAAEVPGRT 468
>AV776018
Length = 476
Score = 66.6 bits (161), Expect = 4e-12
Identities = 29/51 (56%), Positives = 39/51 (75%)
Frame = +1
Query: 65 HISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQ 115
H +E+++II LH +LGNRWS A + PGRTDNEIKN WN+ L KKL+++
Sbjct: 10 HFHKEEDNLIIELHAVLGNRWSQDATQWPGRTDNEIKNLWNSCLKKKLRQR 162
>TC12503 homologue to UP|Q9ATD9 (Q9ATD9) BNLGHi233, partial (24%)
Length = 957
Score = 59.7 bits (143), Expect = 5e-10
Identities = 31/58 (53%), Positives = 37/58 (63%), Gaps = 16/58 (27%)
Frame = +2
Query: 84 RWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQ----------------PTSSSSLPSP 125
RWSLIA R+PGRTDNEIKN+WNT+LSKKL Q P+SS++ P P
Sbjct: 152 RWSLIAGRIPGRTDNEIKNFWNTHLSKKLISQGIDPRTHKPLNPELSIPSSSTTPPPP 325
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,020,821
Number of Sequences: 28460
Number of extensions: 79533
Number of successful extensions: 542
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of query: 254
length of database: 4,897,600
effective HSP length: 88
effective length of query: 166
effective length of database: 2,393,120
effective search space: 397257920
effective search space used: 397257920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC144645.5