TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144645.10 - phase: 0 /pseudo
         (70 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV768744                                                               29  0.19
TC15219 similar to PIR|T00986|T00986 yeast pheromone receptor-li...    25  2.8
TC14820 homologue to UP|HS80_LYCES (P36181) Heat shock cognate p...    24  4.8
TC10797 weakly similar to PIR|C86287|C86287 F9L1.24 protein - Ar...    24  4.8
TC14681 similar to UP|Q9SLZ4 (Q9SLZ4) Retinoblastoma-related pro...    24  6.2
TC16822                                                                23  8.2
TC20125                                                                23  8.2

>AV768744 
          Length = 526

 Score = 28.9 bits (63), Expect = 0.19
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
 Frame = +2

Query: 9   GASVHVEASKYVDSSVL-----PLQAHEVDTARF----FQTTLSRKIEKNCLNGHVVKQI 59
           G+++HV A++ V+SSVL     P     VD  R     F   + +++    +N H + QI
Sbjct: 317 GSTIHVVANQLVESSVLVF*MEPAARSTVDAPRVARIGFVAVIVQRVSAEVVNAHALLQI 496


>TC15219 similar to PIR|T00986|T00986 yeast pheromone receptor-like protein
           AR781 [imported] -                Arabidopsis thaliana
           {Arabidopsis thaliana;}, partial (11%)
          Length = 571

 Score = 25.0 bits (53), Expect = 2.8
 Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 6/41 (14%)
 Frame = +3

Query: 1   VEAKPNTDGASVHVEA-----SKYVD-SSVLPLQAHEVDTA 35
           VEA P T   S H+       S  V  S+ +PLQAH+  TA
Sbjct: 186 VEAPPGTISISCHISVPLLHPSVLVKISTSVPLQAHQASTA 308


>TC14820 homologue to UP|HS80_LYCES (P36181) Heat shock cognate protein 80,
           partial (53%)
          Length = 1180

 Score = 24.3 bits (51), Expect = 4.8
 Identities = 13/34 (38%), Positives = 16/34 (46%)
 Frame = +2

Query: 17  SKYVDSSVLPLQAHEVDTARFFQTTLSRKIEKNC 50
           S +V+SSV PL       +R  QT  S     NC
Sbjct: 167 SSFVNSSVTPLMLWTRSVSRVSQTRASSMDNPNC 268


>TC10797 weakly similar to PIR|C86287|C86287 F9L1.24 protein - Arabidopsis
           thaliana {Arabidopsis thaliana;}, partial (10%)
          Length = 657

 Score = 24.3 bits (51), Expect = 4.8
 Identities = 11/30 (36%), Positives = 16/30 (52%)
 Frame = -1

Query: 19  YVDSSVLPLQAHEVDTARFFQTTLSRKIEK 48
           Y+     PL A ++DT  F   +  RKI+K
Sbjct: 291 YIQGPPPPLVARKIDTDPFLGFSYQRKIQK 202


>TC14681 similar to UP|Q9SLZ4 (Q9SLZ4) Retinoblastoma-related protein,
           partial (22%)
          Length = 911

 Score = 23.9 bits (50), Expect = 6.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 35  ARFFQTTLSRKIEKNCLN 52
           +R   TTL + I K+CLN
Sbjct: 735 SRIIYTTLQKNIHKHCLN 682


>TC16822 
          Length = 802

 Score = 23.5 bits (49), Expect = 8.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -2

Query: 45  KIEKNCLNGHVVKQIRWDLQLLHK 68
           K+E+ C++ H  + + ++  +LHK
Sbjct: 681 KVEQGCISDHPGQVLTFNFDILHK 610


>TC20125 
          Length = 401

 Score = 23.5 bits (49), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 42  LSRKIEKNCLNGHVVKQIRWDLQLLH 67
           L + +EKN    HV+  + W LQ+LH
Sbjct: 380 LRKCLEKN----HVILMVVWFLQILH 315


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,168,968
Number of Sequences: 28460
Number of extensions: 10989
Number of successful extensions: 38
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of query: 70
length of database: 4,897,600
effective HSP length: 46
effective length of query: 24
effective length of database: 3,588,440
effective search space: 86122560
effective search space used: 86122560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)