TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144618.7 + phase: 0 /pseudo
         (1433 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP075943                                                               53  4e-07
BP062602                                                               30  3.5
BP062652                                                               29  4.6
TC18055 similar to UP|CAE46765 (CAE46765) NADPH thioredoxin redu...    29  6.0
BP059881                                                               29  6.0
TC10748 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter,...    28  7.8

>BP075943 
          Length = 547

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 49/137 (35%), Positives = 64/137 (45%), Gaps = 3/137 (2%)
 Frame = -2

Query: 1111 FYCLISICR*HYSCWFIYH*IH*NQSYT*CSFQDQRFGNSKVFFRIRGCSFQRGDLYFSK 1170
            FYC  SIC *  S W  Y *    Q +T  S QDQR G  +VFFR   C+        S+
Sbjct: 531  FYCFASIC**CSSGWK*YA*DSTCQIFTS*SVQDQRLG*GQVFFRS*NCTVHIRHCSQSE 352

Query: 1171 KVLS*PIGFFWTFSF*TCFYSSGYFHQIAP---RQ*QTFC*CVLLQETHWKTSLSQYYKT 1227
            KV S     F T    T F     +HQ+     +   +  *  +L +   +T +S YYKT
Sbjct: 351  KVCSSTDFRFRTLWLPTSFLLP--WHQLTDTRNKHWHSSY*YRVL*KNSGQTLIS*YYKT 178

Query: 1228 RYHTSNSTTQSVFKCSY 1244
             +H  + + QSV  CSY
Sbjct: 177  *HHVCSESAQSVSFCSY 127


>BP062602 
          Length = 536

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = -2

Query: 766 IWHEGSCLA*YNYKGNFCF*KYYTS*KYLSLSTCIIPTSLELLLQHTFKIIRSKS*FQFF 825
           IW+  +C  *        F  Y TS K+     C+    + LLL  +FK++ +KS F   
Sbjct: 259 IWNIRNCQV*-------SFAGYITSLKHTRHKLCLCICQI*LLLYFSFKLLLAKSTF*LH 101

Query: 826 CLQ*FYFF*PKFS 838
           C++  YF   +FS
Sbjct: 100 CME-VYFISIEFS 65


>BP062652 
          Length = 586

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 875 LSDRLCM*FFICFCIRTKILRYSLPYCIISFLCTSIIIPKVFFYVCHTMY 924
           +S+ +C  FF+C+ + + I  + L   ++       ++P V  YVC   Y
Sbjct: 515 MSNSMC--FFVCWLLGSFIALFHLWVVLVELFLIVFVLPIVLSYVCFLFY 372


>TC18055 similar to UP|CAE46765 (CAE46765) NADPH thioredoxin reductase,
           partial (20%)
          Length = 748

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 584 IHTWSFLFSHCCR*FQ*VYLVNFDE 608
           +HTWS   S CCR F     +NFD+
Sbjct: 429 LHTWSAHDSSCCRYFLIFLYINFDK 355


>BP059881 
          Length = 509

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 1020 TCHSFNQKLAFTSVGCK*CFSTW 1042
            TCHSF   L  + VGCK  FS W
Sbjct: 276  TCHSFVIFLYLSCVGCKLSFSFW 208


>TC10748 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter, partial
           (21%)
          Length = 550

 Score = 28.5 bits (62), Expect = 7.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 887 FCIRTKILRYSLPYCIISFLCTSIIIPKVFFYV 919
           F I TK+  Y+  + ++SFL T  I+P+ ++ V
Sbjct: 530 FLIMTKVTAYN*LWLLLSFLYTFFIVPQSYYIV 432


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.380    0.168    0.727 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,961,199
Number of Sequences: 28460
Number of extensions: 525780
Number of successful extensions: 8751
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3516
Number of HSP's successfully gapped in prelim test: 280
Number of HSP's that attempted gapping in prelim test: 4917
Number of HSP's gapped (non-prelim): 4427
length of query: 1433
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1331
effective length of database: 1,994,680
effective search space: 2654919080
effective search space used: 2654919080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.8 bits)
S2: 61 (28.1 bits)