BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144618.2 + phase: 0
(106 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9153 weakly similar to UP|HS82_YEAST (P02829) Heat shock prote... 45 2e-06
TC9612 similar to PIR|T06397|T06397 isoprenylated protein FP6 - ... 42 1e-05
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep... 27 0.40
BP033690 26 1.2
TC10149 similar to GB|AAP37762.1|30725480|BT008403 At3g18890 {Ar... 25 2.6
BI418305 25 2.6
TC15640 similar to GB|AAP37794.1|30725544|BT008435 At3g63460 {Ar... 24 3.4
TC10073 similar to UP|Q9SRK9 (Q9SRK9) F9F8.20 protein, partial (... 24 4.5
TC16264 similar to GB|AAP21178.1|30102520|BT006370 At3g08040/T8G... 24 4.5
TC11082 similar to UP|PFTA_PEA (O24304) Protein farnesyltransfer... 24 4.5
BP036121 23 5.8
AV418711 23 5.8
BP069526 23 7.6
AV415290 23 7.6
AU252098 23 9.9
TC12713 23 9.9
TC10542 similar to GB|AAB58901.1|2160692|ATU73527 B'''' regulato... 23 9.9
TC10260 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (6%) 23 9.9
TC9175 weakly similar to UP|INAD_DROME (Q24008) Inactivation-no-... 23 9.9
>TC9153 weakly similar to UP|HS82_YEAST (P02829) Heat shock protein HSP82,
partial (4%)
Length = 760
Score = 45.1 bits (105), Expect = 2e-06
Identities = 30/75 (40%), Positives = 44/75 (58%)
Frame = +2
Query: 3 NQKLRNKAMAIAVGVSGVEGTTIKGDNKDQIEVTGEEIDSVKLASLLRKKFGYADLVSIE 62
+ K++ KAM G+SGVE ++ D KDQ +ID VK+ LR K +AD++S+
Sbjct: 149 DDKIKKKAMKAVSGLSGVESVSV--DMKDQKMTLIGDIDPVKVVGKLR-KLCHADILSVG 319
Query: 63 AVGKTEEKKDKEKAE 77
EEKKD++K E
Sbjct: 320 PA--KEEKKDEKKKE 358
>TC9612 similar to PIR|T06397|T06397 isoprenylated protein FP6 - soybean
(fragment) {Glycine max;}, partial (32%)
Length = 681
Score = 42.4 bits (98), Expect = 1e-05
Identities = 30/95 (31%), Positives = 52/95 (54%)
Frame = +1
Query: 1 MNNQKLRNKAMAIAVGVSGVEGTTIKGDNKDQIEVTGEEIDSVKLASLLRKKFGYADLVS 60
+++ K++ KAM G+SGVE ++ +K ++ +TG +ID V + S LR K+ + ++VS
Sbjct: 148 LHDDKIKQKAMKSVSGISGVESVSVDMGSK-KLTLTG-DIDPVHVVSKLR-KWCHTEIVS 318
Query: 61 IEAVGKTEEKKDKEKAEAIVAWPYVYSSVPHYPVY 95
+ K E+KKD+ P YP+Y
Sbjct: 319 V-GPAKEEKKKDESSKPDQPKLPEPVKFYEAYPLY 420
>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
containing protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (49%)
Length = 1586
Score = 27.3 bits (59), Expect = 0.40
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 13 IAVGVSGVEGTTIKGDNKDQIEVTGEEIDSVKLASLLRKKFGYADLVSIEAVGKTEEKKD 72
IA V +E ++KG + + +DSV+ LL ++ G LVS+ G +
Sbjct: 855 IAALVEAIEDGSVKGKEFAVLTLLQLCVDSVRNRGLLVREGGIPPLVSLSQSG---TPRA 1025
Query: 73 KEKAEAIVAW 82
K KAE ++ +
Sbjct: 1026KHKAETLLRY 1055
>BP033690
Length = 546
Score = 25.8 bits (55), Expect = 1.2
Identities = 19/62 (30%), Positives = 28/62 (44%)
Frame = -1
Query: 2 NNQKLRNKAMAIAVGVSGVEGTTIKGDNKDQIEVTGEEIDSVKLASLLRKKFGYADLVSI 61
NN+ L+ A+ I +G GTT++ V G D+ AS FG L++I
Sbjct: 462 NNEVLKEAAVRIGIGKLAALGTTLEN------RVPGPIFDTP*SASDHHSYFGIPSLLTI 301
Query: 62 EA 63
A
Sbjct: 300 AA 295
>TC10149 similar to GB|AAP37762.1|30725480|BT008403 At3g18890 {Arabidopsis
thaliana;}, partial (3%)
Length = 544
Score = 24.6 bits (52), Expect = 2.6
Identities = 15/44 (34%), Positives = 22/44 (49%)
Frame = +2
Query: 61 IEAVGKTEEKKDKEKAEAIVAWPYVYSSVPHYPVYEIKNEPSCS 104
I +V KTE+K AE + P S P+YP ++ P+ S
Sbjct: 116 INSVPKTEDK-----AEPVPKQPKSLSPYPYYPDFKPPTSPTPS 232
>BI418305
Length = 437
Score = 24.6 bits (52), Expect = 2.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 70 KKDKEKAEAIVAWPYVYSSVPHY 92
KKDKEK E + A ++Y P Y
Sbjct: 285 KKDKEKVELMQAVSFMYVRPPGY 353
>TC15640 similar to GB|AAP37794.1|30725544|BT008435 At3g63460 {Arabidopsis
thaliana;}, partial (26%)
Length = 1022
Score = 24.3 bits (51), Expect = 3.4
Identities = 11/41 (26%), Positives = 20/41 (47%)
Frame = -3
Query: 66 KTEEKKDKEKAEAIVAWPYVYSSVPHYPVYEIKNEPSCSIM 106
KTE + E A+ I + + S P+YE+ C+++
Sbjct: 795 KTEHRLLTESAKLITGFCFFRSQTTVVPLYEVDANMCCTLL 673
>TC10073 similar to UP|Q9SRK9 (Q9SRK9) F9F8.20 protein, partial (16%)
Length = 500
Score = 23.9 bits (50), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 4 QKLRNKAMAIAVGVSGVEGTTIKGDNKDQIEVTG 37
++LRN++ VGV G G + G++ Q V G
Sbjct: 290 ERLRNESEGGGVGVGGGGGGVLAGEHAHQKLVRG 189
>TC16264 similar to GB|AAP21178.1|30102520|BT006370 At3g08040/T8G24.8
{Arabidopsis thaliana;}, partial (8%)
Length = 519
Score = 23.9 bits (50), Expect = 4.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 65 GKTEEKKDKEKAEAIVAWPY 84
G +EKK K+KA+ + W Y
Sbjct: 414 GYIKEKKKKKKAQVLSNWKY 355
>TC11082 similar to UP|PFTA_PEA (O24304) Protein
farnesyltransferase/geranylgeranyltransferase type I
alpha subunit (CAAX farnesyltransferase alpha subunit)
(Ras proteins prenyltransferase alpha) (FTase-alpha)
(Type I protein geranyl-geranyltransfer , partial (54%)
Length = 581
Score = 23.9 bits (50), Expect = 4.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 17 VSGVEGTTIKGDNKDQIEVTGEEIDSVKLASLLRKKFGYAD 57
VSGVE + G+ K V E+D ++ + FG AD
Sbjct: 246 VSGVEVDDLGGEGKGA*RVFISEVDGSEVVHDFGEVFGVAD 124
>BP036121
Length = 541
Score = 23.5 bits (49), Expect = 5.8
Identities = 10/39 (25%), Positives = 20/39 (50%)
Frame = +2
Query: 66 KTEEKKDKEKAEAIVAWPYVYSSVPHYPVYEIKNEPSCS 104
KTE + + + +P+ + H + E+K+EP+ S
Sbjct: 110 KTESSEKQRSGNVLQCFPHRMKILYHVLLPELKSEPNLS 226
>AV418711
Length = 419
Score = 23.5 bits (49), Expect = 5.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 36 TGEEIDSVKLASLLRKKFGYAD 57
TG E+D +++ ++ FGY D
Sbjct: 207 TGPELDQTHVSTAVKGSFGYLD 272
>BP069526
Length = 496
Score = 23.1 bits (48), Expect = 7.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 68 EEKKDKEKAEAIVAWPY 84
+EKK K+KA+ + W Y
Sbjct: 62 QEKKKKKKAQVLSNWKY 112
>AV415290
Length = 417
Score = 23.1 bits (48), Expect = 7.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 79 IVAWPYVYSSVPHYPVYEIKNEPSCSIM 106
+ +W + +SSVP V +++ P C M
Sbjct: 53 VSSWFHGHSSVPPTYVQPLESRPGCRFM 136
>AU252098
Length = 350
Score = 22.7 bits (47), Expect = 9.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 76 AEAIVAWPYVYSSVPHYPVYEIKNEPSC 103
+EA +P ++ YP+Y+I ++ SC
Sbjct: 167 SEAAPHFPVSKTTTGCYPLYQIPHQSSC 84
>TC12713
Length = 412
Score = 22.7 bits (47), Expect = 9.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 18 SGVEGTTIKGDNKDQIEVTGEEIDSVKLASLLRK 51
+G++ ++K N + + GEE +S A LLR+
Sbjct: 124 AGLDPRSLKTSN*RRTSIAGEEGESSAAAFLLRR 225
>TC10542 similar to GB|AAB58901.1|2160692|ATU73527 B'''' regulatory subunit
of PP2A {Arabidopsis thaliana;}, partial (14%)
Length = 515
Score = 22.7 bits (47), Expect = 9.9
Identities = 9/24 (37%), Positives = 13/24 (53%)
Frame = -1
Query: 37 GEEIDSVKLASLLRKKFGYADLVS 60
G + ++ L KKFGYA +S
Sbjct: 281 GAHLSPIQFTLLAEKKFGYAVTIS 210
>TC10260 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (6%)
Length = 730
Score = 22.7 bits (47), Expect = 9.9
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 35 VTGEEIDSVKLASL 48
+TGEE+D +KL +L
Sbjct: 660 ITGEELDIIKLTAL 701
>TC9175 weakly similar to UP|INAD_DROME (Q24008)
Inactivation-no-after-potential D protein, partial (5%)
Length = 692
Score = 22.7 bits (47), Expect = 9.9
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2
Query: 65 GKTEEKKDKEKA 76
GK EEKK++EKA
Sbjct: 122 GKPEEKKEEEKA 157
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.129 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,427,550
Number of Sequences: 28460
Number of extensions: 13308
Number of successful extensions: 51
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of query: 106
length of database: 4,897,600
effective HSP length: 82
effective length of query: 24
effective length of database: 2,563,880
effective search space: 61533120
effective search space used: 61533120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.7 bits)
Medicago: description of AC144618.2