BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144609.4 - phase: 0 /pseudo
(540 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU089110 317 3e-87
TC17617 weakly similar to UP|Q84SA8 (Q84SA8) Laccase (Fragment),... 184 3e-47
AV406815 168 2e-42
BP031691 133 6e-32
TC10980 similar to UP|Q8VZA1 (Q8VZA1) Laccase (Diphenol oxidase)... 129 9e-31
TC15779 similar to UP|O24093 (O24093) L-ascorbate oxidase precur... 117 5e-27
TC18734 similar to UP|Q8LFM3 (Q8LFM3) Pectinesterase-like protei... 116 8e-27
BP061725 104 3e-23
TC16941 similar to UP|Q8L4Y3 (Q8L4Y3) Diphenol oxidase laccase, ... 95 3e-20
TC17414 weakly similar to UP|Q84SA8 (Q84SA8) Laccase (Fragment),... 90 1e-18
TC13292 similar to UP|Q9FI28 (Q9FI28) Laccase (Diphenol oxidase)... 89 2e-18
TC14453 similar to PIR|T07634|T07634 pollen-specific protein hom... 86 1e-17
TC9968 similar to UP|Q40473 (Q40473) PS60 protein precursor, par... 86 2e-17
AV412458 84 6e-17
TC18839 similar to GB|BAB01744.1|9280289|AP000603 l-ascorbate ox... 80 1e-15
TC14506 homologue to UP|O24093 (O24093) L-ascorbate oxidase prec... 77 5e-15
TC12917 similar to UP|Q9M5B5 (Q9M5B5) Ascorbate oxidase AO1, par... 73 1e-13
AV423533 65 2e-11
AV779965 64 6e-11
TC20034 weakly similar to UP|Q9LM34 (Q9LM34) T10O22.11, partial ... 64 8e-11
>AU089110
Length = 646
Score = 317 bits (812), Expect = 3e-87
Identities = 154/213 (72%), Positives = 177/213 (82%), Gaps = 8/213 (3%)
Frame = +1
Query: 149 TVYGPLILLPRHNESYPFQKPYKEVPILFGEWWNADPEAVIAQALQTGGGPNVSDAYTIN 208
T YGPLI+LP+HN YPF KPYKEVP++FG W+NADPEA+I+QALQTGGGPNVSDAYTIN
Sbjct: 1 TSYGPLIILPKHNAQYPFVKPYKEVPMIFGXWFNADPEAIISQALQTGGGPNVSDAYTIN 180
Query: 209 GFPGPLYNCSK-DTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLIIVEADASYIKPF 267
G PGPLYNCSK DT+KLKVKPG YLLRLINAALNDELFFSIANHTL +VEADA Y+KPF
Sbjct: 181 GLPGPLYNCSKKDTFKLKVKPGXIYLLRLINAALNDELFFSIANHTLKVVEADAVYVKPF 360
Query: 268 ESNTIILGPGQTTNVLLKTKPNYPNSTFYMLARPYFTGQGTFDNSTVAGILEYTKPNDQT 327
+ TI++ PGQTTNVLLKTK +YPN+TF+M ARPY TG TFDNSTVAGILEY ++ T
Sbjct: 361 VTKTILITPGQTTNVLLKTKSHYPNATFFMTARPYVTGLXTFDNSTVAGILEYKIQHNIT 540
Query: 328 NLN-------LPILKPVLPVINDTNFVANFSNK 353
+ N LP+ KP+LP +NDT+F FSNK
Sbjct: 541 HHNSAVKLKKLPLFKPLLPALNDTSFATKFSNK 639
>TC17617 weakly similar to UP|Q84SA8 (Q84SA8) Laccase (Fragment), partial
(53%)
Length = 1139
Score = 184 bits (467), Expect = 3e-47
Identities = 107/272 (39%), Positives = 150/272 (54%), Gaps = 20/272 (7%)
Frame = +2
Query: 289 NYPNSTFYMLARPYFTGQGTFDNSTVAGILEYTKPNDQTNLN------LPILKPVLPVI- 341
N P ++YM+A PY +G FDN T GI+ Y Q + + LP L P++P +
Sbjct: 23 NQPIGSYYMVASPYKSGGKMFDNITSRGIVVYDHQYAQYSSSHLVMPSLPSLNPMMPFLP 202
Query: 342 --NDTNFVANFSNKFLSLNSPKYPANVPKTIDKNFFFIVGLGTSPCPK----NQTCQGPN 395
NDT F + SL + VP +D++ F VGL C N TC+GP
Sbjct: 203 PFNDTPTAHKFYSNITSLVGAPHWVPVPLEVDEHMFITVGLNLQRCDPATVTNDTCKGPM 382
Query: 396 NSSKFAASMNNVSFALPS---IALLQQHFFGANNGFTTDFPVVPLRPFNYTGTPP----N 448
N + + SMNN SF LP ++L+ F + +TTDFP P F++T N
Sbjct: 383 NHT-LSPSMNNESFVLPKGRGYSMLEAFFENMSGVYTTDFPSKPPVMFDFTNPDIRFDLN 559
Query: 449 NTLVSNGTKTVVIPYNTRVQVILQDTSILGAESHPLHLHGFNFFVVGQGFGNFNASSDPA 508
TK + +N+ V+++ Q+T+ + ++H +HLHGFNF V+ QGFGNF+ +SD A
Sbjct: 560 LIFAPKSTKVKKLKFNSTVEIVFQNTAFIHTDNHAMHLHGFNFHVLAQGFGNFDPTSDEA 739
Query: 509 KFNLVDPVERNTVAVPSGGWVAIRFLADNPGV 540
KFNLV+P RNT+AVP GGW IRF A+NPGV
Sbjct: 740 KFNLVNPQIRNTIAVPVGGWAVIRFQANNPGV 835
>AV406815
Length = 426
Score = 168 bits (426), Expect = 2e-42
Identities = 78/141 (55%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Frame = +2
Query: 30 LATSQHGSVTRH-YKFDIRLANVTRLCHTKSMVTVNGKFPGPRIVVREGDRLLVKVVNHV 88
+A+ S T H ++F I+ V RLC T+ ++TVNG+FPGP + VR GD + +KV N
Sbjct: 2 IASLASPSGTHHSHEFVIQTTPVKRLCRTQRILTVNGQFPGPTVQVRNGDSVAIKVTNAG 181
Query: 89 PNNISLHWHGVRQLRSGWSDGPSYITQCPIQTGQSYVYNFTIVGQRGTLFWHAHFSWLRA 148
P NIS+HWHG+R LR+ W+DGPSY+TQCPIQ G SY Y FTI Q GTL+WHAH +LRA
Sbjct: 182 PYNISIHWHGLRMLRNPWADGPSYVTQCPIQPGGSYTYRFTIQNQEGTLWWHAHTGFLRA 361
Query: 149 TVYGPLILLPRHNESYPFQKP 169
TVYG I+ PR YPF P
Sbjct: 362 TVYGAFIIYPRLGSPYPFSMP 424
>BP031691
Length = 481
Score = 133 bits (335), Expect = 6e-32
Identities = 77/161 (47%), Positives = 99/161 (60%), Gaps = 10/161 (6%)
Frame = +1
Query: 220 DTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLIIVEADASYIKPFESNTIILGPGQT 279
DT+ V+ GKTYLLR+INAAL+DEL+F +ANHTL +VE DASY KPF + I++ PGQT
Sbjct: 13 DTFIYTVESGKTYLLRIINAALSDELYFGVANHTLTVVEVDASYTKPFNTRAIMVTPGQT 192
Query: 280 TNVLLKTKPNYPNST--FYMLARPYFTGQGTFDNSTVAGILEYTK--------PNDQTNL 329
TNVLL+ P+S+ F M ARPY T FDNST G L Y P+ T+L
Sbjct: 193 TNVLLRAN-QIPDSSGLFVMAARPYRTSVFPFDNSTTIGYLRYNSTRGEKVKPPHVPTDL 369
Query: 330 NLPILKPVLPVINDTNFVANFSNKFLSLNSPKYPANVPKTI 370
++ LP + DT F FS K S+ + ++P VPK I
Sbjct: 370 SI----HNLPEMEDTKFETEFSAKLRSIATSQFPCKVPKKI 480
>TC10980 similar to UP|Q8VZA1 (Q8VZA1) Laccase (Diphenol oxidase)-like
protein, partial (22%)
Length = 572
Score = 129 bits (325), Expect = 9e-31
Identities = 56/80 (70%), Positives = 68/80 (85%)
Frame = +1
Query: 461 IPYNTRVQVILQDTSILGAESHPLHLHGFNFFVVGQGFGNFNASSDPAKFNLVDPVERNT 520
+ +N+ V+++LQDT++L ESHP HLHG+NFFVVG G GNF+ S DPAK+NLVDPVERNT
Sbjct: 1 VAFNSTVELVLQDTNLLSVESHPFHLHGYNFFVVGTGVGNFDPSKDPAKYNLVDPVERNT 180
Query: 521 VAVPSGGWVAIRFLADNPGV 540
V VP+GGW AIRF ADNPGV
Sbjct: 181 VGVPTGGWTAIRFRADNPGV 240
>TC15779 similar to UP|O24093 (O24093) L-ascorbate oxidase precursor,
partial (50%)
Length = 1304
Score = 117 bits (293), Expect = 5e-27
Identities = 90/300 (30%), Positives = 143/300 (47%), Gaps = 24/300 (8%)
Frame = +1
Query: 4 TVPLSKALFAAFLFVTTFLLTSPGFVLATSQHGSVTRHYKFDIRLANVTRLCHTKSMVTV 63
T+ L KALF + L G ++ G+ RHYKFD+ ++ +
Sbjct: 109 TMSLLKALFL-------WCLLWVGLFQSSVVVGAKVRHYKFDVEYMFKKPDGLEHVVMGI 267
Query: 64 NGKFPGPRIVVREGDRLLVKVVN--HVPNNISLHWHGVRQLRSGWSDGPSYITQCPIQTG 121
NG+FPGP I GD L + + N H + +H HG+RQL + W+DG + I+QC I G
Sbjct: 268 NGQFPGPTIKAEVGDTLDIALTNKLHTEGTV-IHGHGIRQLGTPWADGTAAISQCAINPG 444
Query: 122 QSYVYNFTIVGQRGTLFWHAHFSWLRAT-VYGPLILLPRHNESYPFQKPYKEVPILFGEW 180
+++ Y FT V + GT F+H H+ RA +YG LI+ ++ PF + +L W
Sbjct: 445 ETFHYWFT-VDRPGTYFYHGHYGMQRAAGLYGSLIVDLPKGQNEPFHYDGEFNLLLSDLW 621
Query: 181 WNADPEAVIAQALQTGGGPNVSDAYTINGFPGPLYNCS------------KDTYK----- 223
+ E + + + + ING +NCS + +K
Sbjct: 622 HKSSHEQEVGLSSKPLKWIGEPQSLLING--RGQFNCSLAAKFVNTSLVPQCQFKGGEEC 795
Query: 224 ----LKVKPGKTYLLRLINAALNDELFFSIANHTLIIVEADASYIKPFESNTIILGPGQT 279
L V+P KTY +R+ + L +I+NH LI+VEAD ++++PF + I + G+T
Sbjct: 796 APEILHVEPNKTYRIRIASTTSMASLNLAISNHKLIVVEADGNHVQPFAVDDIDIYSGET 975
>TC18734 similar to UP|Q8LFM3 (Q8LFM3) Pectinesterase-like protein, partial
(47%)
Length = 929
Score = 116 bits (291), Expect = 8e-27
Identities = 72/266 (27%), Positives = 127/266 (47%), Gaps = 1/266 (0%)
Frame = +3
Query: 40 RHYKFDIRLANVTRLCHTKSMVTVNGKFPGPRIVVREGDRLLVKVVNHVPNNISLHWHGV 99
+ Y + + ++ L + ++ +NG+FPGPR+ + D +++ ++N + L W+G+
Sbjct: 84 KFYTWTVTYGTLSPLGSPQQVILINGQFPGPRLDLVTNDNVILNLINKLDEPFLLTWNGI 263
Query: 100 RQLRSGWSDGPSYITQCPIQTGQSYVYNFTIVGQRGTLFWHAHFSWLRAT-VYGPLILLP 158
+Q ++ W DG T CPI +Y Y F Q GT + +A+ +G L +L
Sbjct: 264 KQRKNSWQDG-VLGTNCPIPPNSNYTYKFQAKDQIGTYTYFPSTKMHKASGGFGALNVLH 440
Query: 159 RHNESYPFQKPYKEVPILFGEWWNADPEAVIAQALQTGGGPNVSDAYTINGFPGPLYNCS 218
R P+ P + +L G+W+ ++Q L +G D ING +
Sbjct: 441 RSVIPIPYPNPDGDFTLLIGDWYKTS-HKTLSQTLDSGKSLAFPDGLLINGQAHSTFT-- 611
Query: 219 KDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLIIVEADASYIKPFESNTIILGPGQ 278
V GKTY+ R+ N L+ + F I HTL +VE + S+ E +++ + GQ
Sbjct: 612 -------VNQGKTYMFRISNVGLSTSINFRIQGHTLKLVEVEGSHTIQNEYDSLDVHVGQ 770
Query: 279 TTNVLLKTKPNYPNSTFYMLARPYFT 304
+ +VL+ N P +Y++A FT
Sbjct: 771 SVSVLVTL--NQPPKDYYIVASTRFT 842
>BP061725
Length = 358
Score = 104 bits (260), Expect = 3e-23
Identities = 44/82 (53%), Positives = 61/82 (73%)
Frame = +3
Query: 40 RHYKFDIRLANVTRLCHTKSMVTVNGKFPGPRIVVREGDRLLVKVVNHVPNNISLHWHGV 99
RH+KF++R + T+LC TK+++TVNG+FPGP + V +G+ ++V V N NI++H HGV
Sbjct: 108 RHHKFEVREVSYTKLCSTKNILTVNGQFPGPTLYVTKGETIIVHVYNRANYNITIHXHGV 287
Query: 100 RQLRSGWSDGPSYITQCPIQTG 121
Q R WSDGP Y+TQCPIQ G
Sbjct: 288 NQPRYPWSDGPEYVTQCPIQPG 353
>TC16941 similar to UP|Q8L4Y3 (Q8L4Y3) Diphenol oxidase laccase, partial
(18%)
Length = 625
Score = 95.1 bits (235), Expect = 3e-20
Identities = 40/66 (60%), Positives = 52/66 (78%)
Frame = +2
Query: 474 TSILGAESHPLHLHGFNFFVVGQGFGNFNASSDPAKFNLVDPVERNTVAVPSGGWVAIRF 533
TSI+ E+HP+HLHG++F+VV +GFGNFN +KFNL+DP R TV+VP+ GW IRF
Sbjct: 2 TSIVTPENHPIHLHGYDFYVVAEGFGNFNPKKHTSKFNLLDPPMRYTVSVPANGWAVIRF 181
Query: 534 LADNPG 539
+ADNPG
Sbjct: 182 VADNPG 199
>TC17414 weakly similar to UP|Q84SA8 (Q84SA8) Laccase (Fragment), partial
(27%)
Length = 670
Score = 89.7 bits (221), Expect = 1e-18
Identities = 39/68 (57%), Positives = 51/68 (74%)
Frame = +3
Query: 472 QDTSILGAESHPLHLHGFNFFVVGQGFGNFNASSDPAKFNLVDPVERNTVAVPSGGWVAI 531
Q+T++L A+SHP+H+HG+NF V+ Q FG +N D AK+NLV+P TV VP GGW AI
Sbjct: 15 QNTAVLNAQSHPMHIHGYNFHVLAQDFGIYNPILDKAKYNLVNPQISTTVPVPPGGWAAI 194
Query: 532 RFLADNPG 539
RF A+NPG
Sbjct: 195 RFQANNPG 218
>TC13292 similar to UP|Q9FI28 (Q9FI28) Laccase (Diphenol oxidase), partial
(19%)
Length = 558
Score = 88.6 bits (218), Expect = 2e-18
Identities = 38/59 (64%), Positives = 44/59 (74%)
Frame = +2
Query: 482 HPLHLHGFNFFVVGQGFGNFNASSDPAKFNLVDPVERNTVAVPSGGWVAIRFLADNPGV 540
HP+HLHGF+F VVG GFGNFN P ++L+DP NTV VP GW AIRF+ADNPGV
Sbjct: 8 HPMHLHGFSFHVVGYGFGNFNKRKSPMYYDLIDPPLLNTVIVPKNGWAAIRFVADNPGV 184
>TC14453 similar to PIR|T07634|T07634 pollen-specific protein homolog
T1P17.10 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (56%)
Length = 1364
Score = 86.3 bits (212), Expect = 1e-17
Identities = 79/309 (25%), Positives = 124/309 (39%), Gaps = 15/309 (4%)
Frame = +2
Query: 247 FSIANHTLIIVEADASYIKPFESNTIILGPGQTTNVLLKTKPNYPNSTFYMLARPYFTGQ 306
F I NH L++ E + SY ++ + GQ+ L+ N ++ +Y++A F +
Sbjct: 2 FRIQNHNLLLAETEGSYTVQQNYTSLDVHVGQSYTFLVTMDQN-ASTDYYIVASARFVNE 178
Query: 307 GTFDNSTVAGILEYTKPNDQTNLNLPILKPVLPVINDTNFVANFSNKFLSLNSPKYPANV 366
+ T GIL YT + + LP + F Y N
Sbjct: 179 SRWQRVTGVGILHYTNSKGKA-------RGPLPAAPEDQF------------DKTYSMNQ 301
Query: 367 PKTIDKNFFFIVGLGTSPCPKNQTCQGPNN---------------SSKFAASMNNVSFAL 411
++I N + G P P+ G N + K A+++ +SF
Sbjct: 302 ARSIRWN---VSASGARPNPQGSFRYGSINVTEVYVLKNKPRVKINGKKRATLSGISFVN 472
Query: 412 PSIALLQQHFFGANNGFTTDFPVVPLRPFNYTGTPPNNTLVSNGTKTVVIPYNTRVQVIL 471
PS + F + + DFP PL TG+P T V NG+ Y +++IL
Sbjct: 473 PSTPIRLADQFKLKDIYKLDFPTRPL-----TGSPRAETSVINGS------YRGFIEIIL 619
Query: 472 QDTSILGAESHPLHLHGFNFFVVGQGFGNFNASSDPAKFNLVDPVERNTVAVPSGGWVAI 531
Q+ H HL G+ FFVVG +G+++ +S +N D + R T V G W AI
Sbjct: 620 QNND---TRMHTYHLDGYAFFVVGMDYGDWSDNS-RGTYNKWDGIARATTQVYPGAWTAI 787
Query: 532 RFLADNPGV 540
DN G+
Sbjct: 788 LVSLDNVGI 814
>TC9968 similar to UP|Q40473 (Q40473) PS60 protein precursor, partial (27%)
Length = 631
Score = 85.5 bits (210), Expect = 2e-17
Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 1/170 (0%)
Frame = +2
Query: 11 LFAAFLFVTTFLLTSPGFVLATSQHGSVTRHYKFDIRLANVTRLCHTKSMVTVNGKFPGP 70
L A F +T LL + V A + R + + I ++ L + + +NG+FPGP
Sbjct: 137 LRALLSFCSTLLLLNLVHVSAEDPY----RFFDWTITYGDIYPLGVKQQGILINGQFPGP 304
Query: 71 RIVVREGDRLLVKVVNHVPNNISLHWHGVRQLRSGWSDGPSYITQCPIQTGQSYVYNFTI 130
I D L++ V NH+P L W+GV+Q R+ + DG Y T CPI G+++ YN +
Sbjct: 305 EIYSVTNDNLVINVHNHLPEPFLLSWNGVQQRRNSYQDG-VYGTTCPIPPGKNFTYNLQV 481
Query: 131 VGQRGTLFWHAHFSWLRAT-VYGPLILLPRHNESYPFQKPYKEVPILFGE 179
Q G+ F+ ++ +A +G + +L R PF +P + +L G+
Sbjct: 482 KDQIGSFFYFPSLAFHKAAGGFGAIKILSRPRIPVPFPEPAADFSLLIGD 631
>AV412458
Length = 423
Score = 84.0 bits (206), Expect = 6e-17
Identities = 55/131 (41%), Positives = 68/131 (50%), Gaps = 3/131 (2%)
Frame = +2
Query: 295 FYMLARPYFTGQGT-FDNSTVAGILEYTKPNDQTNLNLPILKPVLPVINDTNFVANFSNK 353
+YM AR Y T FDN+T ILEY N + PIL P+LP NDT F++
Sbjct: 23 YYMAARAYQTAMNAAFDNTTTTAILEYIPRNRNVQPSTPIL-PLLPAFNDTPTATAFTSG 199
Query: 354 FLSLNSPKYPANVPKTIDKNFFFIVGLGTSPC--PKNQTCQGPNNSSKFAASMNNVSFAL 411
L+ N + D N FF VGLG C P + CQGPN S +FAAS+NN SF L
Sbjct: 200 IRGLSQNVVFKN---SADVNLFFTVGLGLIFCRNPNSPNCQGPNGS-RFAASINNNSFVL 367
Query: 412 PSIALLQQHFF 422
P L Q ++
Sbjct: 368 PRTTSLMQAYY 400
>TC18839 similar to GB|BAB01744.1|9280289|AP000603 l-ascorbate oxidase;
pectinesterase-like protein; pollen-specific
protein-like {Arabidopsis thaliana;} , partial (29%)
Length = 498
Score = 79.7 bits (195), Expect = 1e-15
Identities = 51/165 (30%), Positives = 77/165 (45%), Gaps = 1/165 (0%)
Frame = +1
Query: 86 NHVPNNISLHWHGVRQLRSGWSDGPSYITQCPIQTGQSYVYNFTIVGQRGTLFWHAHFSW 145
N++ + WHGV+Q ++ W DG + T CPI G +Y Y+F + Q G+ F++ +
Sbjct: 13 NNLDEPLQFTWHGVQQRKNSWQDGVAG-TSCPILPGTNYTYHFQVKDQIGSYFYYPTTAL 189
Query: 146 LRAT-VYGPLILLPRHNESYPFQKPYKEVPILFGEWWNADPEAVIAQALQTGGGPNVSDA 204
RA +G L + R P+ P E ++ G+W+ A + L +G D
Sbjct: 190 HRAAGGFGGLRIFSRLLIPVPYPDPEDEYWVIIGDWY-AKSHKTLKSFLDSGRSIGRPDG 366
Query: 205 YTINGFPGPLYNCSKDTYKLKVKPGKTYLLRLINAALNDELFFSI 249
ING + Y + KPGKTY R+ N L D L F I
Sbjct: 367 VLINGKTAKGDGSDQPLYTM--KPGKTYKYRICNVGLKDSLNFRI 495
>TC14506 homologue to UP|O24093 (O24093) L-ascorbate oxidase precursor,
partial (24%)
Length = 692
Score = 77.4 bits (189), Expect = 5e-15
Identities = 44/95 (46%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Frame = +3
Query: 449 NTLVSNGTKTVVIPYNTRVQVILQDTSIL---GAESHPLHLHGFNFFVVGQGFGNFNASS 505
NT V NG + N V VILQ+ + L G+E HP HLHG +F+V+G G G F
Sbjct: 30 NTTVGNGV--YMFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGEGKFRPGV 203
Query: 506 DPAKFNLVDPVERNTVAVPSGGWVAIRFLADNPGV 540
D FNL RNT + GW A+RF ADNPGV
Sbjct: 204 DEKSFNLTRAPLRNTAVIFPYGWTALRFKADNPGV 308
>TC12917 similar to UP|Q9M5B5 (Q9M5B5) Ascorbate oxidase AO1, partial (19%)
Length = 521
Score = 72.8 bits (177), Expect = 1e-13
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Frame = +1
Query: 467 VQVILQDTSILG----AESHPLHLHGFNFFVVGQGFGNFNASSDPAKFNLVDPVERNTVA 522
V V+LQ+T+IL ++ HP HLHG +F+++G G G F D KFNL +P RN
Sbjct: 1 VDVVLQNTNILERIKRSDFHPWHLHGHDFWILGYGDGMFKPGDDETKFNLENPPLRNNAV 180
Query: 523 VPSGGWVAIRFLADNPGV 540
+ GW A+RF A+NPGV
Sbjct: 181 LFPYGWTALRFKANNPGV 234
>AV423533
Length = 472
Score = 65.5 bits (158), Expect = 2e-11
Identities = 44/151 (29%), Positives = 65/151 (42%), Gaps = 1/151 (0%)
Frame = -2
Query: 96 WHGVRQLRSGWSDGPSYITQCPIQTGQSYVYNFTIVGQRGTLFWHAHFSWLRAT-VYGPL 154
W+GV Q R+ W DG + T CPI GQ++ Y + Q G+ F+ ++ RA YG +
Sbjct: 453 WNGVFQRRNSWQDG-VFGTNCPIPPGQNFTYVLQVKDQIGSYFYFPSLAFHRAAGGYGGI 277
Query: 155 ILLPRHNESYPFQKPYKEVPILFGEWWNADPEAVIAQALQTGGGPNVSDAYTINGFPGPL 214
+ R PF P + IL G+W+ + + L +G D ING
Sbjct: 276 KIASRPLIPVPFPPPAGDFTILAGDWYKRN-HTDLRAILDSGSDLPFPDGLLINGH---- 112
Query: 215 YNCSKDTYKLKVKPGKTYLLRLINAALNDEL 245
+ Y V G TY R+ N L +
Sbjct: 111 ---GSNAYTFMVNQGNTYRFRISNVGLTTSI 28
>AV779965
Length = 218
Score = 63.9 bits (154), Expect = 6e-11
Identities = 23/37 (62%), Positives = 32/37 (86%)
Frame = +1
Query: 97 HGVRQLRSGWSDGPSYITQCPIQTGQSYVYNFTIVGQ 133
HG+RQ+R+GW+DGP +++QCPI+ G+SY Y FTI GQ
Sbjct: 106 HGIRQIRTGWADGPEFVSQCPIRPGESYTYKFTIQGQ 216
>TC20034 weakly similar to UP|Q9LM34 (Q9LM34) T10O22.11, partial (15%)
Length = 457
Score = 63.5 bits (153), Expect = 8e-11
Identities = 28/46 (60%), Positives = 32/46 (68%)
Frame = +2
Query: 495 GQGFGNFNASSDPAKFNLVDPVERNTVAVPSGGWVAIRFLADNPGV 540
G GFGNF+ DP +NLVDP +NTVA+P GW IRF A NPGV
Sbjct: 2 GWGFGNFD*EKDPLGYNLVDPPYQNTVAIPKNGWTTIRFRAKNPGV 139
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,982,589
Number of Sequences: 28460
Number of extensions: 149645
Number of successful extensions: 751
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of query: 540
length of database: 4,897,600
effective HSP length: 95
effective length of query: 445
effective length of database: 2,193,900
effective search space: 976285500
effective search space used: 976285500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144609.4