TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144609.1 + phase: 0 
         (269 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP029617                                                              142  5e-35
TC8098 similar to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment), p...   140  3e-34
BP047388                                                               96  5e-21
AU089551                                                               77  4e-15
BP072134                                                               72  1e-13
AV770870                                                               66  7e-12
TC11376 similar to GB|AAM61400.1|21537059|AY084835 pectate lyase...    64  3e-11
AI967809                                                               57  4e-09
TC17017 similar to UP|PEL8_ARATH (Q9M8Z8) Probable pectate lyase...    37  0.004
BP051361                                                               29  0.74
TC15924 weakly similar to GB|BAC21577.1|24060129|AP005438 G-prot...    27  3.6
TC9969 similar to UP|Q93XJ1 (Q93XJ1) Pectate lyase, partial (22%)      27  3.6

>BP029617 
          Length = 493

 Score =  142 bits (359), Expect = 5e-35
 Identities = 69/165 (41%), Positives = 99/165 (59%)
 Frame = -1

Query: 44  TLRYGASKIQGKVWITFKRNMNIKLVRPLLISSFTTIDGRGVDVHIADNACLMIYKATNI 103
           TLR+   + +  +WI F  +M I L   L+ +S+ T+DGRG +V I  + C+ +   +N+
Sbjct: 493 TLRHAVIQDE-PLWIVFAADMTINLRHELIFNSYKTVDGRGANVQITGHGCITLQYISNV 317

Query: 104 IIHGIRVHHCRPQAPGMVMGPDGKIISLGQVDGDAIRLVSASKIWIDHNTLYDCQDGLLD 163
           IIH I VHHC+P     +      +   G  DGD I +  A  IWIDH +L  C DGL+D
Sbjct: 316 IIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGARNIWIDHCSLSYCADGLID 137

Query: 164 VTRGSTDITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYF 208
              GST ITISNN F   ++VMLLGH+D +  D+ M+VT+ +N+F
Sbjct: 136 AIMGSTAITISNNHFAHHDEVMLLGHNDKYTPDRGMQVTIAFNHF 2


>TC8098 similar to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment), partial
           (56%)
          Length = 1349

 Score =  140 bits (352), Expect = 3e-34
 Identities = 67/124 (54%), Positives = 80/124 (64%)
 Frame = +3

Query: 135 DGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDGFV 194
           DGDAI +  +S IW DHN+L    DGL D   GST ITISNN     N+ +LLGH D + 
Sbjct: 9   DGDAISIFGSSHIWDDHNSLPHRADGLADAVMGSTAITISNNHLTHHNEAILLGHSDSYT 188

Query: 195 RDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNMYMGWVQYAIGGSMEPSLKSQSNLF 254
           RDK M+VT+ YN+FG    QRMPR  HGY HV NN Y  W  YAIGGS  P++ SQ N +
Sbjct: 189 RDKQMQVTIAYNHFGEGLIQRMPRCIHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRY 368

Query: 255 IAPV 258
            AP+
Sbjct: 369 NAPL 380


>BP047388 
          Length = 590

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 51/124 (41%), Positives = 72/124 (57%), Gaps = 4/124 (3%)
 Frame = -2

Query: 23  KDLIHYKVTDPSDH-PLNSTPGTLRYGASKIQGKVWITFKRNMNIKLVRPLLISSFTTID 81
           K +  Y VTD SDH P+N  PGTLRY   + +  +WI F  NM IKL + L+ +S+ TID
Sbjct: 580 KGVQFYIVTDSSDHDPVNPKPGTLRYAVIQNE-PLWIVFPSNMMIKLSQELIFNSYKTID 404

Query: 82  GRGVDVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGM-VMGPDG--KIISLGQVDGDA 138
           GRG DVHI    C+ +   +N+IIH I VHHC P    +   GP+    ++ + Q+    
Sbjct: 403 GRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGTIIWACGPEDPMMVVLIFQISAQI 224

Query: 139 IRLV 142
            R++
Sbjct: 223 TRMI 212


>AU089551 
          Length = 599

 Score = 76.6 bits (187), Expect = 4e-15
 Identities = 45/95 (47%), Positives = 59/95 (61%), Gaps = 1/95 (1%)
 Frame = +3

Query: 28  YKVTDPSDHPLNST-PGTLRYGASKIQGKVWITFKRNMNIKLVRPLLISSFTTIDGRGVD 86
           Y VTD SD+ + S  PGTLRY   + +G +WI F R M I L + LLISS  TIDGRG +
Sbjct: 300 YVVTDDSDNDMVSPKPGTLRYAVVQ-KGPLWIIFARXMVITLQQELLISSDKTIDGRGAN 476

Query: 87  VHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMV 121
           V I   A L +    N+I+HGIRV + + +  GM+
Sbjct: 477 VQIRGGAGLTMQFVNNVIVHGIRVKNIKARNGGMI 581


>BP072134 
          Length = 397

 Score = 71.6 bits (174), Expect = 1e-13
 Identities = 38/68 (55%), Positives = 46/68 (66%), Gaps = 1/68 (1%)
 Frame = +2

Query: 28  YKVTDPSDH-PLNSTPGTLRYGASKIQGKVWITFKRNMNIKLVRPLLISSFTTIDGRGVD 86
           Y VTD  D  P+N  PGTLRYGA + +  +WI FKR+M I L + LL++SF TIDGRG  
Sbjct: 197 YVVTDSGDDDPVNPRPGTLRYGAIQDE-PLWIIFKRDMVINLKQELLVNSFKTIDGRGAS 373

Query: 87  VHIADNAC 94
           VHIA   C
Sbjct: 374 VHIAGGGC 397


>AV770870 
          Length = 528

 Score = 65.9 bits (159), Expect = 7e-12
 Identities = 49/142 (34%), Positives = 73/142 (50%)
 Frame = +2

Query: 42  PGTLRYGASKIQGKVWITFKRNMNIKLVRPLLISSFTTIDGRGVDVHIADNACLMIYKAT 101
           PG+LR G  + +  +WI F+ +  I L   L +SS+ T+DGRG  + +     L + +  
Sbjct: 158 PGSLREGCRRKE-PLWIVFQVSGTIHLQSYLSVSSYKTVDGRGQRIKLTGKG-LRLKECE 331

Query: 102 NIIIHGIRVHHCRPQAPGMVMGPDGKIISLGQVDGDAIRLVSASKIWIDHNTLYDCQDGL 161
           +II+  + +   R        G D        VDG  I+  ++  IWID  +L D  DGL
Sbjct: 332 HIIVCNLELEGGR--------GHD--------VDGIQIK-PNSRHIWIDRCSLRDYDDGL 460

Query: 162 LDVTRGSTDITISNNWFREQNK 183
           +D+TR STDITIS   F   +K
Sbjct: 461 IDITRQSTDITISRCHFASHDK 526


>TC11376 similar to GB|AAM61400.1|21537059|AY084835 pectate lyase-like
           protein {Arabidopsis thaliana;} , partial (26%)
          Length = 636

 Score = 63.9 bits (154), Expect = 3e-11
 Identities = 34/63 (53%), Positives = 43/63 (67%), Gaps = 1/63 (1%)
 Frame = +1

Query: 28  YKVTDPSDHPL-NSTPGTLRYGASKIQGKVWITFKRNMNIKLVRPLLISSFTTIDGRGVD 86
           Y VTD SD+ + N  PGTLRYG  + +  +WI F  NM IKL + L+ +S+ TIDGRG D
Sbjct: 451 YLVTDSSDNDVVNPKPGTLRYGVIQNE-PLWIVFPSNMMIKLSQELIFNSYKTIDGRGAD 627

Query: 87  VHI 89
           VHI
Sbjct: 628 VHI 636


>AI967809 
          Length = 482

 Score = 56.6 bits (135), Expect = 4e-09
 Identities = 24/40 (60%), Positives = 28/40 (70%)
 Frame = +2

Query: 218 RIRHGYAHVANNMYMGWVQYAIGGSMEPSLKSQSNLFIAP 257
           R RHGY HV NN Y  W  YAIGGS  P++ SQ+N F+AP
Sbjct: 65  RCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQANRFLAP 184


>TC17017 similar to UP|PEL8_ARATH (Q9M8Z8) Probable pectate lyase 8
           precursor  , partial (28%)
          Length = 670

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 23/48 (47%), Positives = 30/48 (61%), Gaps = 2/48 (4%)
 Frame = +3

Query: 28  YKVTDP-SDHPLNSTPGTLRYGASKIQGK-VWITFKRNMNIKLVRPLL 73
           Y VTD   D P+N  PGTLR+    IQ + +WI FKR+M I L + L+
Sbjct: 531 YVVTDSRDDDPVNPRPGTLRHAV--IQDRPLWIVFKRDMVITLKQELI 668


>BP051361 
          Length = 458

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 146 KIWIDHNTLYDCQDGLLDVT 165
           K WI+H T Y+C DG  D T
Sbjct: 394 KPWIEHVTTYNCNDGPCDAT 335


>TC15924 weakly similar to GB|BAC21577.1|24060129|AP005438 G-protein beta
           family-like protein {Oryza sativa (japonica
           cultivar-group);}, partial (11%)
          Length = 1262

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 10/18 (55%), Positives = 15/18 (82%)
 Frame = -1

Query: 25  LIHYKVTDPSDHPLNSTP 42
           LI + + DPS++PLNS+P
Sbjct: 164 LISHTLIDPSEYPLNSSP 111


>TC9969 similar to UP|Q93XJ1 (Q93XJ1) Pectate lyase, partial (22%)
          Length = 485

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +1

Query: 239 IGGSMEPSLKSQSNLFIAP 257
           IGGS  P+L SQ + F+AP
Sbjct: 1   IGGSANPTLHSQGHSFVAP 57


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,976,186
Number of Sequences: 28460
Number of extensions: 66157
Number of successful extensions: 302
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of query: 269
length of database: 4,897,600
effective HSP length: 89
effective length of query: 180
effective length of database: 2,364,660
effective search space: 425638800
effective search space used: 425638800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)