BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144592.7 + phase: 0
(129 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19397 similar to PIR|S47137|S47137 homeotic protein Athb-7 - A... 181 3e-47
TC8307 weakly similar to UP|Q9SP47 (Q9SP47) Homeodomain-leucine ... 101 5e-23
TC12208 similar to UP|Q8LC03 (Q8LC03) Homeobox gene 13 protein, ... 83 1e-17
TC18394 similar to UP|O23208 (O23208) Homeodomain protein, parti... 77 9e-16
BP082022 62 2e-11
BP041362 58 4e-10
TC19406 similar to UP|Q9FJS2 (Q9FJS2) Homeobox protein, partial ... 57 1e-09
AV428630 49 4e-07
BP056674 44 7e-06
TC17963 similar to UP|HAT5_ARATH (Q02283) Homeobox-leucine zippe... 35 0.005
BP036297 33 0.012
BP079785 33 0.020
TC18190 weakly similar to UP|O24569 (O24569) HOX1B protein, part... 32 0.026
BP035388 29 0.22
TC9129 homologue to UP|Q8LLE2 (Q8LLE2) BEL1-related homeotic pro... 29 0.22
TC16503 homologue to UP|HKL3_MALDO (O04136) Homeobox protein kno... 29 0.29
TC14557 similar to UP|HD1_BRANA (P46606) Homeobox protein HD1, p... 28 0.38
TC9750 similar to GB|BAA08554.1|1805619|D49703S2 OSH42 transcrip... 28 0.49
TC9396 similar to UP|Q9ZRB9 (Q9ZRB9) Homeobox 1 protein (Fragmen... 28 0.49
TC19093 similar to UP|P87519 (P87519) GP80, partial (9%) 28 0.65
>TC19397 similar to PIR|S47137|S47137 homeotic protein Athb-7 - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (35%)
Length = 723
Score = 181 bits (460), Expect = 3e-47
Identities = 90/122 (73%), Positives = 108/122 (87%), Gaps = 3/122 (2%)
Frame = +2
Query: 5 QYSSYSAEAGEEETYTTSSIS---SMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKK 61
+Y+ + E + ETYTTSS + SMRKK+NKN +RF+DEQIKSLE+MFE+E+RLEPRKK
Sbjct: 161 EYTYSAEETADAETYTTSSSTQPVSMRKKRNKNARRFSDEQIKSLESMFESESRLEPRKK 340
Query: 62 LQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLI 121
LQLARELGLQPRQVAIWFQNKRARWKSKQLEREY+ L ++YNNLASK+E +KKE+QTLLI
Sbjct: 341 LQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSMLSSNYNNLASKYEVLKKEKQTLLI 520
Query: 122 QV 123
Q+
Sbjct: 521 QL 526
>TC8307 weakly similar to UP|Q9SP47 (Q9SP47) Homeodomain-leucine zipper
protein 57, partial (51%)
Length = 1629
Score = 101 bits (251), Expect = 5e-23
Identities = 43/98 (43%), Positives = 74/98 (74%)
Frame = +1
Query: 31 KNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQ 90
+++ +R + +Q++ LE F + +LEP +K ++A++LGLQPRQVAIWFQN+RARWK+KQ
Sbjct: 631 QSEKKRRLSVDQVQFLEKSF*VDNKLEPDRKTKIAKDLGLQPRQVAIWFQNRRARWKTKQ 810
Query: 91 LEREYNKLQNSYNNLASKFESMKKERQTLLIQVLSIVQ 128
LE++Y+ L +S+ +L S ++++ KE+ L +V S+ +
Sbjct: 811 LEKDYDSLHSSFESLKSNYDNLLKEKDMLKAEVASLTE 924
>TC12208 similar to UP|Q8LC03 (Q8LC03) Homeobox gene 13 protein, partial
(24%)
Length = 660
Score = 83.2 bits (204), Expect = 1e-17
Identities = 37/57 (64%), Positives = 47/57 (81%)
Frame = +1
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLE 92
KR + EQ+K+LE FE +LEP +K+QLA+ LGLQPRQ+AIWFQN+RARWK+K LE
Sbjct: 490 KRLSLEQVKALERSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKHLE 660
>TC18394 similar to UP|O23208 (O23208) Homeodomain protein, partial (46%)
Length = 846
Score = 77.0 bits (188), Expect = 9e-16
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 10/84 (11%)
Frame = +2
Query: 28 RKKKNK---------NTKR-FTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAI 77
R KKN+ N KR ++EQ+ LE F E +LE +K +LA EL L PRQVA+
Sbjct: 125 RNKKNRGGENGSAEANKKRKLSEEQVNLLEQNFGHEHKLESERKDKLAAELCLDPRQVAV 304
Query: 78 WFQNKRARWKSKQLEREYNKLQNS 101
WFQN+RARWK+K+LE EY+ L+ S
Sbjct: 305 WFQNRRARWKNKKLEEEYSNLKKS 376
>BP082022
Length = 455
Score = 62.4 bits (150), Expect = 2e-11
Identities = 32/74 (43%), Positives = 46/74 (61%)
Frame = -3
Query: 46 LETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNL 105
LE F+ + L P++K LAR+L L+PRQV +WFQN+RAR K KQ E + + L+ L
Sbjct: 444 LEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCDFLKKCCETL 265
Query: 106 ASKFESMKKERQTL 119
+ ++KE Q L
Sbjct: 264 TDENMRLQKELQEL 223
>BP041362
Length = 560
Score = 58.2 bits (139), Expect = 4e-10
Identities = 30/96 (31%), Positives = 48/96 (49%)
Frame = +3
Query: 10 SAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELG 69
+ ++G E S + K K R T QI+ +E F+ + +++ +L+RELG
Sbjct: 114 ATKSGSENHEGASGEDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELG 293
Query: 70 LQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNL 105
L+P QV WFQNKR + K++ E L+ L
Sbjct: 294 LEPLQVKFWFQNKRTQMKTQHERHENTSLRTENEKL 401
>TC19406 similar to UP|Q9FJS2 (Q9FJS2) Homeobox protein, partial (10%)
Length = 546
Score = 56.6 bits (135), Expect = 1e-09
Identities = 28/84 (33%), Positives = 51/84 (60%)
Frame = +1
Query: 7 SSYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLAR 66
S +E E+++ I+ KKK + R T QI+ +E +F+ + +++++L+
Sbjct: 277 SGSESEQVEDKSGNEQEITEQPKKKRYH--RHTARQIQEMEALFKECPHPDDKQRMKLSH 450
Query: 67 ELGLQPRQVAIWFQNKRARWKSKQ 90
+LGL+PRQV WFQN+R + K++Q
Sbjct: 451 DLGLKPRQVKFWFQNRRTQMKAQQ 522
>AV428630
Length = 342
Score = 48.5 bits (114), Expect = 4e-07
Identities = 22/54 (40%), Positives = 33/54 (60%)
Frame = +1
Query: 28 RKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQN 81
R K K R T QI+ +E+ F+ + +++ +L+RELGL+P QV WFQN
Sbjct: 181 RPNKKKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQN 342
>BP056674
Length = 566
Score = 44.3 bits (103), Expect = 7e-06
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = +1
Query: 37 RFTDEQIKSLETMFETETRLEPRKKLQLAREL----GLQPRQVAIWFQNKRARWKSKQLE 92
R+T Q+++LE ++ + ++ QL RE ++P+Q+ +WFQN+R R K +
Sbjct: 127 RYTAGQVEALERVYTECPKPSSLRRQQLIRECPVLANVEPKQIKVWFQNRRCREKQR--- 297
Query: 93 REYNKLQNSYNNLASKFESMKKERQTLLIQVLSIV 127
+E ++LQ L + + + +E L QV +V
Sbjct: 298 KEASRLQAVNRKLNAMNKLLMEENDRLQKQVSQLV 402
>TC17963 similar to UP|HAT5_ARATH (Q02283) Homeobox-leucine zipper protein
HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1), partial
(24%)
Length = 738
Score = 34.7 bits (78), Expect = 0.005
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = +1
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQL 64
+R T EQ+ LE FE E +LEP +K QL
Sbjct: 652 RRLTSEQVNLLEKSFEEENKLEPERKTQL 738
>BP036297
Length = 569
Score = 33.5 bits (75), Expect = 0.012
Identities = 25/89 (28%), Positives = 40/89 (44%)
Frame = +3
Query: 12 EAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQ 71
E G EE ++ K K K Q++ LE + E + +L+ +LGL
Sbjct: 120 ECGSEEENKKNTPEGENKVKRKMKSA---SQLELLEKTYAVEAYPGEVLRAELSEKLGLS 290
Query: 72 PRQVAIWFQNKRARWKSKQLEREYNKLQN 100
RQ+ +WF ++R K ++ NKL N
Sbjct: 291 DRQLQMWFCHRRL--KDRKATPGSNKLLN 371
>BP079785
Length = 472
Score = 32.7 bits (73), Expect = 0.020
Identities = 27/73 (36%), Positives = 37/73 (49%), Gaps = 7/73 (9%)
Frame = -3
Query: 25 SSMRK---KKNKNTKRFTDEQIKSLETMFETETRLE---PRKKLQLARELGLQPRQVAIW 78
SS+RK KK K K D + K+L + T R +KLQL+ GL +Q+ W
Sbjct: 470 SSLRKEFLKKRKKGKLPKDAR-KTLTDWWNTHYRWPYPTEEEKLQLSEMTGLDIKQINHW 294
Query: 79 FQNKRAR-WKSKQ 90
F N+R R WK +
Sbjct: 293 FINQRKRHWKPSE 255
>TC18190 weakly similar to UP|O24569 (O24569) HOX1B protein, partial (10%)
Length = 981
Score = 32.3 bits (72), Expect = 0.026
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 28 RKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 87
+K ++ +R D ++ L F+ + K LA ELGL QV WF N ARW
Sbjct: 426 KKPRSSTRQRLGDVVVQRLHKSFKDNQYPDRATKESLAEELGLTFFQVDKWFGN--ARWG 599
Query: 88 SKQLER 93
++ R
Sbjct: 600 FRRSSR 617
>BP035388
Length = 557
Score = 29.3 bits (64), Expect = 0.22
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Frame = +3
Query: 41 EQIKSLETMFETETRLEPRKKLQLAREL-----GLQPRQVAIWFQNKRARWKSKQ----- 90
EQI LE++F + P+ + R+L + V WFQN+R+R + +Q
Sbjct: 123 EQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQMQA 302
Query: 91 -LEREYNKLQNS 101
L + N LQN+
Sbjct: 303 SLVEQRNNLQNN 338
>TC9129 homologue to UP|Q8LLE2 (Q8LLE2) BEL1-related homeotic protein 13
(Fragment), partial (22%)
Length = 604
Score = 29.3 bits (64), Expect = 0.22
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 64 LARELGLQPRQVAIWFQNKRARWKSKQLEREYNK 97
LAR+ GL QV+ WF N R R +E Y +
Sbjct: 251 LARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQ 352
>TC16503 homologue to UP|HKL3_MALDO (O04136) Homeobox protein knotted-1 like
3 (KNAP3), partial (22%)
Length = 723
Score = 28.9 bits (63), Expect = 0.29
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 61 KLQLARELGLQPRQVAIWFQNKRAR-WKS 88
K +L +E GLQ +Q+ WF N+R R W S
Sbjct: 148 KARLVQETGLQLKQINNWFINQRKRNWHS 234
>TC14557 similar to UP|HD1_BRANA (P46606) Homeobox protein HD1, partial
(84%)
Length = 1456
Score = 28.5 bits (62), Expect = 0.38
Identities = 14/29 (48%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Frame = +3
Query: 61 KLQLARELGLQPRQVAIWFQNKRAR-WKS 88
K +L E GLQ +Q+ WF N+R R W S
Sbjct: 963 KAKLVEETGLQLKQINNWFINQRKRNWHS 1049
>TC9750 similar to GB|BAA08554.1|1805619|D49703S2 OSH42 transcript {Oryza
sativa (japonica cultivar-group);} , partial (32%)
Length = 704
Score = 28.1 bits (61), Expect = 0.49
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 61 KLQLARELGLQPRQVAIWFQNKRAR 85
K +L +E GLQ +Q+ WF N+R R
Sbjct: 134 KARLVQETGLQLKQINNWFINQRKR 208
>TC9396 similar to UP|Q9ZRB9 (Q9ZRB9) Homeobox 1 protein (Fragment),
partial (68%)
Length = 1138
Score = 28.1 bits (61), Expect = 0.49
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 61 KLQLARELGLQPRQVAIWFQNKRAR 85
K +L +E GLQ +Q+ WF N+R R
Sbjct: 763 KARLVQETGLQLKQINNWFINQRKR 837
>TC19093 similar to UP|P87519 (P87519) GP80, partial (9%)
Length = 525
Score = 27.7 bits (60), Expect = 0.65
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = +3
Query: 18 TYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPR 59
T TSS S K +NTK + ++LET ET +P+
Sbjct: 393 TTATSSTSRTTTHKTQNTKSRSQNTNRNLETQTETNQAQKPK 518
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.123 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,576,598
Number of Sequences: 28460
Number of extensions: 14725
Number of successful extensions: 126
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of query: 129
length of database: 4,897,600
effective HSP length: 80
effective length of query: 49
effective length of database: 2,620,800
effective search space: 128419200
effective search space used: 128419200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)
Medicago: description of AC144592.7