BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144564.12 + phase: 0
(357 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB829575 96 9e-21
TC16854 33 0.096
AV417211 30 0.81
TC15386 similar to UP|Q8W1N7 (Q8W1N7) CSLC7 (Fragment), partial ... 29 1.4
TC11414 29 1.4
TC7929 similar to UP|GGH_ARATH (O65355) Gamma-glutamyl hydrolase... 28 1.8
BP034218 28 1.8
TC14908 weakly similar to PIR|A86218|A86218 protein T27G7.18 [im... 28 1.8
TC13015 28 2.4
AV780410 28 3.1
TC16487 similar to UP|Q9LT09 (Q9LT09) 50S ribosomal protein L24,... 28 3.1
TC16579 weakly similar to UP|AAR82740 (AAR82740) SD09672p (Fragm... 28 3.1
BP066447 27 4.0
AV407648 27 4.0
AV417236 27 5.3
TC14033 similar to GB|AAO63396.1|28950945|BT005332 At5g13570 {Ar... 27 6.9
TC14728 similar to UP|Q9LSL0 (Q9LSL0) Emb|CAB16809.1, partial (86%) 27 6.9
BU494245 26 9.0
TC9029 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase... 26 9.0
>CB829575
Length = 521
Score = 95.9 bits (237), Expect = 9e-21
Identities = 55/145 (37%), Positives = 83/145 (56%), Gaps = 6/145 (4%)
Frame = +3
Query: 213 FSCISNPYMFKQLLELSVEELIAKGNSSLLARRNAASKLLDKVFRVRLGRGFYGECLGVR 272
F+ NP +F QLL L ++ +I++G S+ ++ L K + + LG G YG CL V
Sbjct: 18 FNAQINPSVFDQLLSLDLDSVISQGVVSISHKQKLIDDCLSKSYEIALGNGAYGHCLAVH 197
Query: 273 AD-GNSNLSDEIGMLLSVKSASIGLRPIGAVIFM-----QRNNLKMCLRSSDNATDTSEV 326
AD S L E+G L+ KS LR IGAV++ LK+ LRS DN DT+ +
Sbjct: 198 ADTALSQLRSELGHQLATKSQKPKLRGIGAVVYKVPELENDQKLKISLRSVDN-EDTTPI 374
Query: 327 AKAYGGGGSASSSSFIIRMDEYNQW 351
++ +GGGG ++SSF++ +E+ QW
Sbjct: 375 SQEFGGGGHRNASSFMLMCEEFEQW 449
>TC16854
Length = 568
Score = 32.7 bits (73), Expect = 0.096
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 300 GAVIFMQRNNLKMCLRSSDNATDTSEVAKAYGGGGSASSSSF 341
G V+ + RN L CL S+ +TD+ + ++A GGG S SF
Sbjct: 286 GEVVDLLRNIL--CLSSAKQSTDSEQTSRAVGGGEGLKSCSF 167
>AV417211
Length = 171
Score = 29.6 bits (65), Expect = 0.81
Identities = 13/28 (46%), Positives = 18/28 (63%)
Frame = +1
Query: 41 VLYNYPSFSGAFSSLFAHLFHTRHNLPS 68
+LY+YP G F++L AHLF +L S
Sbjct: 46 ILYHYPCPDGVFAALAAHLFFKATSLSS 129
>TC15386 similar to UP|Q8W1N7 (Q8W1N7) CSLC7 (Fragment), partial (22%)
Length = 689
Score = 28.9 bits (63), Expect = 1.4
Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 2/55 (3%)
Frame = +3
Query: 70 SLPFSSVPSLAFSCYNIGLKICA--LKAFRHAICLTFFLQTNSLIIGFDHRKSVL 122
S FSS+P SC GL A LK RH C FL + I+G + R ++
Sbjct: 168 SFLFSSLPRFVISCDGFGLNWGAGELKLIRHGNCFACFL---TPILGSESRLQLM 323
>TC11414
Length = 701
Score = 28.9 bits (63), Expect = 1.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 204 IGLSEWRSRFSCISNPYMFKQLLEL 228
I L +WRS+ CI++ Y+FKQ L
Sbjct: 473 IHLIKWRSQTCCITSNYLFKQYTRL 399
>TC7929 similar to UP|GGH_ARATH (O65355) Gamma-glutamyl hydrolase precursor
(Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) ,
partial (83%)
Length = 1299
Score = 28.5 bits (62), Expect = 1.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 10 PPCVEIGYRSLRSDAALEAIAKASEDKVPNIVLYNYP 46
PPCVE R ++ +L+AI + + D N +L + P
Sbjct: 900 PPCVEFPMRPIQRRFSLDAIGRQTLDSYVNALLKHKP 790
>BP034218
Length = 516
Score = 28.5 bits (62), Expect = 1.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 10 PPCVEIGYRSLRSDAALEAIAKASEDKVPNIVLYNYP 46
PPCVE R ++ +L+AI + + D N +L + P
Sbjct: 217 PPCVEFPMRPIQRRFSLDAIGRQTLDSYVNALLKHKP 327
>TC14908 weakly similar to PIR|A86218|A86218 protein T27G7.18 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(68%)
Length = 1219
Score = 28.5 bits (62), Expect = 1.8
Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 3/48 (6%)
Frame = -3
Query: 58 HLFHTRHNLPSL-SLPFSSVPSLAF--SCYNIGLKICALKAFRHAICL 102
HL + +LPSL LP S SL + IGL +C + + H +C+
Sbjct: 503 HLKRSSSSLPSLMELPLSQDVSLCWRGQMMTIGLCLCLVHHYSHIVCM 360
>TC13015
Length = 528
Score = 28.1 bits (61), Expect = 2.4
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = +1
Query: 35 DKVPNIVLYNYPSFSGAFSSLFAHLFHTRHNL 66
DK+P I++ NYPS G S L ++ RH++
Sbjct: 271 DKMPRILMVNYPS*CG--SELLIEVWQARHHV 360
>AV780410
Length = 548
Score = 27.7 bits (60), Expect = 3.1
Identities = 24/95 (25%), Positives = 38/95 (39%)
Frame = +2
Query: 39 NIVLYNYPSFSGAFSSLFAHLFHTRHNLPSLSLPFSSVPSLAFSCYNIGLKICALKAFRH 98
N+V+ Y S +L+ FHTR PS+ ++S+ FS +
Sbjct: 152 NVVVVVYEMVSRGSHNLYTSRFHTRKLSPSIITFYTSL-IFGFSIF-------------- 286
Query: 99 AICLTFFLQTNSLIIGFDHRKSVLSQIPSTNECPE 133
FF + II D +LSQ +++ PE
Sbjct: 287 ----VFFFYVRNTIIDEDQPHPLLSQQSLSHQVPE 379
>TC16487 similar to UP|Q9LT09 (Q9LT09) 50S ribosomal protein L24, complete
Length = 934
Score = 27.7 bits (60), Expect = 3.1
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -3
Query: 192 RHWSLPDIKPFNIGLSEWRSRFSCISNPYMFKQLLELSVEELIAKGNSSLLARRNAASK 250
RHW + +IG W F+C P+M LL++ + ++ N ++L + +K
Sbjct: 428 RHW----VTNLHIGGMNWG--FNCKDAPFMTLPLLDMLLYQIFTLNNDTILRANDTLNK 270
>TC16579 weakly similar to UP|AAR82740 (AAR82740) SD09672p (Fragment),
partial (5%)
Length = 705
Score = 27.7 bits (60), Expect = 3.1
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Frame = +3
Query: 127 STNECPENIMINLN--------HEKSSSRAVYEYFTDKHEDIKTSNGVVPSLVDSKDKGR 178
ST+ CP+ + N HE + ++ +H+ NG+ PS+ KD+
Sbjct: 474 STDPCPQVTVQETNEQENASEKHEHQCEKQEHQCEKQEHQSDSAQNGIEPSVATDKDEVM 653
Query: 179 VE 180
E
Sbjct: 654 AE 659
>BP066447
Length = 320
Score = 27.3 bits (59), Expect = 4.0
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Frame = -2
Query: 201 PFNIGLSEWRSRFSCISNPYMFKQLLELSVEELIAKGNSSLLARRNAASKLLDKVFRVRL 260
PF + + +RSRF+ + P F +SV L SL+ VF L
Sbjct: 301 PFTVSIRRFRSRFAVFNFPQNFWXFQSISVFLLRIDSCFSLIGFWGLVHWWEVSVFGE*L 122
Query: 261 ---GRGFYGECLGVRADGNSNLSDE 282
G F G+C G DG +E
Sbjct: 121 QFGGVWFLGKCRGFLRDGYKQCGEE 47
>AV407648
Length = 430
Score = 27.3 bits (59), Expect = 4.0
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +1
Query: 38 PNIVLYNYPSFSGAFSSLFAHLFH 61
PN+V + PSFS + SS +H F+
Sbjct: 52 PNVVSQSLPSFSSSSSSFLSHKFN 123
>AV417236
Length = 399
Score = 26.9 bits (58), Expect = 5.3
Identities = 14/21 (66%), Positives = 16/21 (75%)
Frame = +1
Query: 65 NLPSLSLPFSSVPSLAFSCYN 85
NLP L LPF +PSLAFS Y+
Sbjct: 112 NLPLL-LPFQLLPSLAFSFYH 171
>TC14033 similar to GB|AAO63396.1|28950945|BT005332 At5g13570 {Arabidopsis
thaliana;}, partial (52%)
Length = 583
Score = 26.6 bits (57), Expect = 6.9
Identities = 14/53 (26%), Positives = 25/53 (46%), Gaps = 5/53 (9%)
Frame = -1
Query: 59 LFHTRHNLPSLSLPFSSVPSLAFSCYNI-----GLKICALKAFRHAICLTFFL 106
+FHT +N+ P S +P F + + +K C + F + C+ FF+
Sbjct: 454 IFHTSNNIK----PHSLLPKNNFKVFILVKKF*NIKTCFFQDFSYGTCMIFFI 308
>TC14728 similar to UP|Q9LSL0 (Q9LSL0) Emb|CAB16809.1, partial (86%)
Length = 1142
Score = 26.6 bits (57), Expect = 6.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 67 PSLSLPFSSVPSLAFSCYNIGLKICALKAFRHAICLTFF 105
P SL SS + SC N+G I L + +CLT F
Sbjct: 658 PGASLVNSSYAASNASCQNLGNLILRLLVYTSHMCLTTF 542
>BU494245
Length = 482
Score = 26.2 bits (56), Expect = 9.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 48 FSGAFSSLFAHLFHTRHNLPS----LSLPFSSVPSLAFSCYNIGL 88
F AFS+ H+FH H + LS P +LAF+ +GL
Sbjct: 268 FGCAFSNCHLHIFHGHHAILQRFLLLSAPVVEELALAFAGERLGL 134
>TC9029 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase, partial
(73%)
Length = 1636
Score = 26.2 bits (56), Expect = 9.0
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = -1
Query: 117 HRKSVLSQIPSTNECPENIMINLNHEKSS 145
HRK+ L+ PST + P N+M NL +S
Sbjct: 865 HRKAFLNHSPSTKQPPGNLM-NLGFRSAS 782
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,423,325
Number of Sequences: 28460
Number of extensions: 92002
Number of successful extensions: 545
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of query: 357
length of database: 4,897,600
effective HSP length: 91
effective length of query: 266
effective length of database: 2,307,740
effective search space: 613858840
effective search space used: 613858840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC144564.12