BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144563.4 + phase: 0
(588 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesteras... 362 e-101
AU089094 268 4e-72
TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B pre... 159 1e-58
BP033848 219 7e-58
TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%) 179 1e-45
AU088938 170 7e-43
TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precu... 167 3e-42
TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precu... 121 4e-28
AV426815 99 3e-21
AU088824 96 2e-20
TC19984 similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase , pa... 91 4e-19
BF177669 87 8e-18
CN825195 86 1e-17
AU089161 68 2e-17
TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase ... 81 4e-16
BP050971 79 2e-15
AV765593 78 4e-15
TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase ... 75 3e-14
AI967495 75 4e-14
TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precur... 74 5e-14
>TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase ,
partial (29%)
Length = 934
Score = 362 bits (929), Expect = e-101
Identities = 178/272 (65%), Positives = 209/272 (76%)
Frame = +2
Query: 316 PAKTIVTGRKNQMAGTNTQNTATFSNTAMGFIGKAMTFENTAGPAGMQAVAFRNIGDMSA 375
PAKTI+TGRKN G T TATF+N A GFI KA+TFENTAGP G QAVA RN GD SA
Sbjct: 5 PAKTIITGRKNFADGVKTMQTATFANQAPGFIAKAITFENTAGPNGHQAVALRNQGDQSA 184
Query: 376 LVGCHIVGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSATLIQSSTIIVRKGNYDHNEYN 435
VGCHI+GYQDTLYVQTNRQFYRNCVISGTIDFIFGTS TLIQ S I+VRK N N++N
Sbjct: 185 FVGCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQHSIIVVRKPN--DNQFN 358
Query: 436 VIVADGSPLVNMNTGIVIQDCNIIPEAALVPEKFTVRSYLGRPWQNESKAVIMESTIGDF 495
+ ADG+P NM TGIVIQDC I+PEAAL P +F ++SYLGRPW+ S+ V+MEST+GDF
Sbjct: 359 TVTADGTPTKNMPTGIVIQDCEIVPEAALFPVRFKIKSYLGRPWKEYSRTVVMESTLGDF 538
Query: 496 IHQDGWTTWPEEQNKPEKHHENTCYFAEYANTGPGANVARRVKWKGYKGVISRSEATKYT 555
IH +GW W +T Y+AE+ANTGPGAN A R+KWKGY+GVISR+EAT++T
Sbjct: 539 IHPEGWFPW------AGSFALDTLYYAEHANTGPGANTAGRIKWKGYRGVISRAEATQFT 700
Query: 556 ASIWLDAGPKTAPKSAVEWLHDLHVPHYLGFK 587
A +L AG P+S ++W+ LHVPHYLGFK
Sbjct: 701 AGEFLKAG----PRSGLDWIKALHVPHYLGFK 784
>AU089094
Length = 639
Score = 268 bits (685), Expect(2) = 4e-72
Identities = 134/204 (65%), Positives = 160/204 (77%), Gaps = 1/204 (0%)
Frame = +1
Query: 29 NGEDPKVQTQQRNLRIMCQNAQDQKLCHDTLSSVRGADAADPKAYIAAAVKAATDNVIKA 88
N +VQTQQR++R +CQN DQKLCHDTLSSV+G DAADPKAYIA AVKAA+D+VIKA
Sbjct: 1 NSAPAEVQTQQRSVRTICQNTDDQKLCHDTLSSVKGVDAADPKAYIATAVKAASDSVIKA 180
Query: 89 FNMSERLTTEYGKKN-GAKMALDDCKDLMQFALDSLDLSNNCVRDNNIEAVHDQTADMRN 147
FNMS+RLTTEYG K+ G KMALDDCKDL+Q A+ SLDLS VRDNNI+ VH+Q D RN
Sbjct: 181 FNMSDRLTTEYGNKDHGIKMALDDCKDLLQSAMQSLDLSTTLVRDNNIQGVHNQIPDFRN 360
Query: 148 WLSAVISYKQGCMEGFDDANDGEKKIKEQFHVQSLYSVQKVTAVALDIVTGLSDILQQFN 207
WL AVISY+Q CMEGFD+ DGEK IKEQ +S+ V ++ A+ LDIVT ++ IL QFN
Sbjct: 361 WLGAVISYQQACMEGFDNDXDGEKXIKEQLXTESMDHVXRIXAITLDIVTNMTKILXQFN 540
Query: 208 LNFDIKPPSRRLLNSEVTVDDQGY 231
L D+KP SRRLL + VD++GY
Sbjct: 541 LKLDLKPASRRLLXXD--VDNEGY 606
Score = 21.2 bits (43), Expect(2) = 4e-72
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 232 PSWISSSGRKL 242
PSW S+S RKL
Sbjct: 606 PSWFSASERKL 638
>TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B precursor
(Pectin methylesterase) (PE) , partial (54%)
Length = 1145
Score = 159 bits (403), Expect(2) = 1e-58
Identities = 81/190 (42%), Positives = 116/190 (60%)
Frame = +2
Query: 264 DGSGQFKTIQAALASYPKGNKDRYVIYVKAGVYDEYITVPKEAVNILMYGDGPAKTIVTG 323
DGSG + T+ A+ + P + R+VIYVK GVY+EY + K+ NI+M GDG T+++G
Sbjct: 29 DGSGNYTTVMEAVLAAPDYSMKRFVIYVKKGVYEEYAEIKKKKWNIMMVGDGMDVTVISG 208
Query: 324 RKNQMAGTNTQNTATFSNTAMGFIGKAMTFENTAGPAGMQAVAFRNIGDMSALVGCHIVG 383
++ G T +ATF+ + GFI + +TF+NTAGP QAVA R+ D++ C I G
Sbjct: 209 NRSFGDGWTTFKSATFAVSGRGFIARGITFQNTAGPEKHQAVALRSDSDLAVFFRCSITG 388
Query: 384 YQDTLYVQTNRQFYRNCVISGTIDFIFGTSATLIQSSTIIVRKGNYDHNEYNVIVADGSP 443
YQD+LY T RQFY+ C I+GT+DFIFG + + Q+ I RKG D + N I A G
Sbjct: 389 YQDSLYPHTMRQFYKECRITGTVDFIFGDATAVFQNCNIQARKGLQD--QKNTITAQGRK 562
Query: 444 LVNMNTGIVI 453
++G +
Sbjct: 563 DPGQSSGFFV 592
Score = 84.3 bits (207), Expect(2) = 1e-58
Identities = 40/108 (37%), Positives = 63/108 (58%)
Frame = +3
Query: 454 QDCNIIPEAALVPEKFTVRSYLGRPWQNESKAVIMESTIGDFIHQDGWTTWPEEQNKPEK 513
Q CNI ++ L+P ++++YLGRPW+ S+ V M+S + D + GW W
Sbjct: 594 QYCNITADSELLPSVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEW-------NT 752
Query: 514 HHENTCYFAEYANTGPGANVARRVKWKGYKGVISRSEATKYTASIWLD 561
++T ++ EY N G GA V RVKW GY V++ SEA K+T + +++
Sbjct: 753 SFDDTLFYGEYLNYGAGAGVGNRVKWGGYH-VLNDSEAGKFTVNQFIE 893
>BP033848
Length = 525
Score = 219 bits (559), Expect = 7e-58
Identities = 110/178 (61%), Positives = 136/178 (75%)
Frame = +2
Query: 132 DNNIEAVHDQTADMRNWLSAVISYKQGCMEGFDDANDGEKKIKEQFHVQSLYSVQKVTAV 191
DNNI+AVH+QT D RNWLSAV+SY+Q CMEGF+D GE+ +K Q SL + K+T +
Sbjct: 2 DNNIQAVHEQTPDFRNWLSAVMSYQQSCMEGFEDGKSGEEAVKGQLQEGSLDQMGKLTGI 181
Query: 192 ALDIVTGLSDILQQFNLNFDIKPPSRRLLNSEVTVDDQGYPSWISSSGRKLLAKMQRKGW 251
ALDIV+ LS ILQ F+L D+ P SRRLL +E VD +G PSW S + RKLL KM++ G
Sbjct: 182 ALDIVSDLSRILQTFDLKLDLNPASRRLLEAE-EVDHEGLPSWFSGADRKLLGKMKKGG- 355
Query: 252 RANIRPNAVVANDGSGQFKTIQAALASYPKGNKDRYVIYVKAGVYDEYITVPKEAVNI 309
+ PNAVVA DGSG+FKTI +A+ASYPKG K RY+IYV+AGVYDEYITVPK+AVN+
Sbjct: 356 --KVTPNAVVAKDGSGKFKTIASAIASYPKGFKGRYIIYVRAGVYDEYITVPKQAVNL 523
>TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%)
Length = 848
Score = 179 bits (454), Expect = 1e-45
Identities = 99/220 (45%), Positives = 131/220 (59%), Gaps = 3/220 (1%)
Frame = +1
Query: 264 DGSGQFKTIQAALASYPKGNKDR---YVIYVKAGVYDEYITVPKEAVNILMYGDGPAKTI 320
+G+ + +I A+A+ P K + ++IYV+ G Y+EY+ VPKE NIL+ GDG KTI
Sbjct: 172 NGTDNYTSIGDAIAAAPNHTKPQDGYFLIYVREGYYEEYVIVPKEKKNILLVGDGINKTI 351
Query: 321 VTGRKNQMAGTNTQNTATFSNTAMGFIGKAMTFENTAGPAGMQAVAFRNIGDMSALVGCH 380
+TG + + G T N++TF+ + F +TF NTAGPA QAVA RN D+S C
Sbjct: 352 ITGNHSVIDGWTTFNSSTFAVSGERFTAVDVTFRNTAGPAKHQAVAVRNNADLSTFYRCS 531
Query: 381 IVGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSATLIQSSTIIVRKGNYDHNEYNVIVAD 440
GYQDTLYV + RQFYR C I GT+DFIFG +A + Q+ I RK + N + A
Sbjct: 532 FEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPL--PFQKNAVTAQ 705
Query: 441 GSPLVNMNTGIVIQDCNIIPEAALVPEKFTVRSYLGRPWQ 480
G N NTGI IQ+C I L E + SYLGRPW+
Sbjct: 706 GRTDPNQNTGISIQNCTIDAAPDLAAELNSTLSYLGRPWE 825
>AU088938
Length = 641
Score = 170 bits (430), Expect = 7e-43
Identities = 95/219 (43%), Positives = 141/219 (64%), Gaps = 1/219 (0%)
Frame = +1
Query: 87 KAFNMSERLTTEYGKKN-GAKMALDDCKDLMQFALDSLDLSNNCVRDNNIEAVHDQTADM 145
+AFNMS+RLT E+ N G KMAL+DCKDL+Q A+ L S V+ + V+ ++A++
Sbjct: 7 EAFNMSDRLTVEHENSNPGVKMALEDCKDLLQSAIQELQASGVLVQXXXLLDVNQRSAEL 186
Query: 146 RNWLSAVISYKQGCMEGFDDANDGEKKIKEQFHVQSLYSVQKVTAVALDIVTGLSDILQQ 205
+NWLSAV++Y+Q C++GFD GEK ++++ SL V K+T +ALDIV+G+S +L
Sbjct: 187 KNWLSAVVAYQQSCLDGFD--TKGEKXVQDKLQQGSLDDVGKLTGLALDIVSGISKVLGA 360
Query: 206 FNLNFDIKPPSRRLLNSEVTVDDQGYPSWISSSGRKLLAKMQRKGWRANIRPNAVVANDG 265
F+ N +K P+RRLL +D +GYP+W+S + RKL+ ++N+ PNA+VA DG
Sbjct: 361 FDFNLHLK-PARRLLE----IDAEGYPTWLSFADRKLVES------KSNVLPNAIVAKDG 507
Query: 266 SGQFKTIQAALASYPKGNKDRYVIYVKAGVYDEYITVPK 304
G FK I A+ SY + +AGVYD+Y T+ K
Sbjct: 508 XGXFKNITEAINSYLXXTXVNPHL-CQAGVYDKYSTLTK 621
>TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precursor
(Pectin methylesterase 3) (PE 3) , partial (34%)
Length = 773
Score = 167 bits (424), Expect = 3e-42
Identities = 89/210 (42%), Positives = 127/210 (60%)
Frame = +3
Query: 363 QAVAFRNIGDMSALVGCHIVGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSATLIQSSTI 422
QAVA R+ D S C G+QDTLY +NRQFYR C I+GTIDFIFG +A++ Q+ I
Sbjct: 12 QAVAMRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAASIFQNCKI 191
Query: 423 IVRKGNYDHNEYNVIVADGSPLVNMNTGIVIQDCNIIPEAALVPEKFTVRSYLGRPWQNE 482
+ R+ N++ I A G N NTGIVIQ I P + +T +YLGRPW++
Sbjct: 192 MPRQPM--PNQFYTITAQGKKDPNQNTGIVIQKSTITP----LESTYTAPTYLGRPWKDF 353
Query: 483 SKAVIMESTIGDFIHQDGWTTWPEEQNKPEKHHENTCYFAEYANTGPGANVARRVKWKGY 542
S +IM+S IG F+ GW +W + P T ++AE+ N+GPG++VA+RVKW GY
Sbjct: 354 STTLIMQSEIGSFLKPVGWVSWVANVDPPA-----TIFYAEHQNSGPGSDVAQRVKWTGY 518
Query: 543 KGVISRSEATKYTASIWLDAGPKTAPKSAV 572
K ++ + K+T + ++ GP+ P +AV
Sbjct: 519 KSTLTADDLGKFTLASFIQ-GPEWLPDTAV 605
>TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precursor
(Pectinesterase) , partial (59%)
Length = 1082
Score = 121 bits (303), Expect = 4e-28
Identities = 90/308 (29%), Positives = 148/308 (47%), Gaps = 4/308 (1%)
Frame = +3
Query: 46 CQNAQDQKLCHDTLSSVRGADAA---DPKAYIAAAVKAATDNVIKAFNMSERLTTEYGKK 102
C++A D C +S V + + DPK I ++ + + I+ + +
Sbjct: 243 CEHALDASSCLAHVSEVSQSPISATKDPKLNILISLMTKSTSHIQEAMVKTKAIKNRINN 422
Query: 103 NGAKMALDDCKDLMQFALDSL-DLSNNCVRDNNIEAVHDQTADMRNWLSAVISYKQGCME 161
+ AL DC+ LM ++D + D +DN D D WLS V++ C++
Sbjct: 423 PREEAALSDCEQLMDLSIDRVWDSVMALTKDNT-----DSHQDAHAWLSGVLTNHATCLD 587
Query: 162 GFDDANDGEKKIKEQFHVQSLYSVQKVTAVALDIVTGLSDILQQFNLNFDIKPPSRRLLN 221
G + G + + ++ L S K T++AL +V+ L+ K + ++++
Sbjct: 588 GLE----GPSRALMEAEIEDLISRSK-TSLAL-LVSVLAP-----------KGGNEQIID 716
Query: 222 SEVTVDDQGYPSWISSSGRKLLAKMQRKGWRANIRPNAVVANDGSGQFKTIQAALASYPK 281
+ D +PSW++ R+LL ++ N VVA DGSG+FKT+ A+AS P
Sbjct: 717 EPL---DGDFPSWVTRKDRRLLESSV-----GDVNANVVVAKDGSGRFKTVAEAVASAPD 872
Query: 282 GNKDRYVIYVKAGVYDEYITVPKEAVNILMYGDGPAKTIVTGRKNQMAGTNTQNTATFSN 341
K RYVIYVK G Y E I + K+ N+++ GDG TI+TG N + G+ T +AT +
Sbjct: 873 SGKTRYVIYVKKGTYKENIEIGKKKTNVMLTGDGMDATIITGNLNVIDGSTTFKSATVAA 1052
Query: 342 TAMGFIGK 349
GFI +
Sbjct: 1053VGDGFIAQ 1076
>AV426815
Length = 391
Score = 98.6 bits (244), Expect = 3e-21
Identities = 53/126 (42%), Positives = 79/126 (62%)
Frame = +3
Query: 213 KPPSRRLLNSEVTVDDQGYPSWISSSGRKLLAKMQRKGWRANIRPNAVVANDGSGQFKTI 272
K SR+L+ + + +P WIS++ R+LL ++ + VVA DGSG FKT+
Sbjct: 24 KTGSRKLMEA-----GEVWPEWISAADRRLLQA-------GTVKADVVVAADGSGNFKTV 167
Query: 273 QAALASYPKGNKDRYVIYVKAGVYDEYITVPKEAVNILMYGDGPAKTIVTGRKNQMAGTN 332
AA+A+ P+ +K RYVI +KAGVY E + VPK+ NI+ GDG TI+TG +N + G+
Sbjct: 168 SAAVAAAPEKSKTRYVIKIKAGVYRENVEVPKKKTNIMFLGDGRTTTIITGSRNVVDGST 347
Query: 333 TQNTAT 338
T ++AT
Sbjct: 348 TFHSAT 365
>AU088824
Length = 421
Score = 95.5 bits (236), Expect = 2e-20
Identities = 51/95 (53%), Positives = 57/95 (59%)
Frame = +1
Query: 308 NILMYGDGPAKTIVTGRKNQMAGTNTQNTATFSNTAMGFIGKAMTFENTAGPAGMQAVAF 367
NILMYGDGP KTI+TGRKN G T TATF+N A GFI KA+TFENTAGP +
Sbjct: 10 NILMYGDGPTKTIITGRKNFADGVKTMQTATFANQAPGFIAKAITFENTAGPTVTKLWH* 189
Query: 368 RNIGDMSALVGCHIVGYQDTLYVQTNRQFYRNCVI 402
G SA +G L VQT QFYR C +
Sbjct: 190 XTKGXQSAFRWAAHLGLPKXLLVQTTXQFYRXCFL 294
>TC19984 similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase , partial (11%)
Length = 300
Score = 91.3 bits (225), Expect = 4e-19
Identities = 45/94 (47%), Positives = 56/94 (58%)
Frame = +3
Query: 225 TVDDQGYPSWISSSGRKLLAKMQRKGWRANIRPNAVVANDGSGQFKTIQAALASYPKGNK 284
++D G+PSW+ R+LL + +PN VA DGSG FKTI AL P K
Sbjct: 33 SLDSDGFPSWVHVDDRRLLKAADNRP-----KPNVTVAKDGSGDFKTISEALNKIPATYK 197
Query: 285 DRYVIYVKAGVYDEYITVPKEAVNILMYGDGPAK 318
RYV+YVK GVYDE +TV K+ N+ MYGDG K
Sbjct: 198 GRYVVYVKEGVYDEQVTVTKKMQNVTMYGDGSQK 299
>BF177669
Length = 336
Score = 87.0 bits (214), Expect = 8e-18
Identities = 46/106 (43%), Positives = 64/106 (59%)
Frame = +3
Query: 450 GIVIQDCNIIPEAALVPEKFTVRSYLGRPWQNESKAVIMESTIGDFIHQDGWTTWPEEQN 509
GI IQ+C+I P L V++YLGRPW+N S V+M+ST+G FI +GW W
Sbjct: 42 GISIQNCSISPFGNLS----YVQTYLGRPWKNYSTTVVMQSTLGSFISPNGWLPWVGNS- 206
Query: 510 KPEKHHENTCYFAEYANTGPGANVARRVKWKGYKGVISRSEATKYT 555
+T ++AEY N G GA+ RVKWKG K + S+ +A+K+T
Sbjct: 207 -----APDTIFYAEYQNVGQGASTKNRVKWKGLKTITSK-QASKFT 326
>CN825195
Length = 551
Score = 86.3 bits (212), Expect = 1e-17
Identities = 59/191 (30%), Positives = 101/191 (51%), Gaps = 2/191 (1%)
Frame = +2
Query: 159 CMEGFDDANDGEKKIKEQFHVQSLYSVQKVTAVALDIVTGLSDILQQFNLNFDIKPPSRR 218
C +GF D + +K+Q V +L + ++ + L I G D + +RR
Sbjct: 35 CADGFADTSGD---VKDQMAV-NLKDLSELVSNCLAIFAGAGDDFSGVPIQ------NRR 184
Query: 219 LLNSEVTVDDQGYPSWISSSGRKLLAKMQRKGWRANIRPNAVVANDGSGQFKTIQAALAS 278
LL + D +P W++ R+LL+ + ++ + VV+ DG+G KTI A+
Sbjct: 185 LL----AMRDDNFPRWLNRRDRRLLSLPV-----SAMQADVVVSKDGNGTAKTIAEAIKK 337
Query: 279 YPKGNKDRYVIYVKAGVYDE-YITVPKEAVNILMYGDGPAKTIVTGRKNQMAG-TNTQNT 336
P+ R++IYV+AG Y+E + + ++ N+++ GDG KT++TG KN M G T +T
Sbjct: 338 VPEYGSRRFIIYVRAGRYEENNLKIGRKRTNVMIIGDGKGKTVITGGKNVMYGLLTTFHT 517
Query: 337 ATFSNTAMGFI 347
A+F+ + GFI
Sbjct: 518 ASFAASGAGFI 550
>AU089161
Length = 400
Score = 67.8 bits (164), Expect = 5e-12
Identities = 34/59 (57%), Positives = 37/59 (62%)
Frame = +2
Query: 359 PAGMQAVAFRNIGDMSALVGCHIVGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSATLI 417
PA + F D SA C I GYQDTLY +RQFYRNC ISGT+DFIFG S LI
Sbjct: 224 PASTKQ*RFACKXDRSAFFDCAISGYQDTLYAHAHRQFYRNCEISGTVDFIFGYSTLLI 400
Score = 60.1 bits (144), Expect(2) = 2e-17
Identities = 29/56 (51%), Positives = 37/56 (65%)
Frame = +1
Query: 313 GDGPAKTIVTGRKNQMAGTNTQNTATFSNTAMGFIGKAMTFENTAGPAGMQAVAFR 368
G GP KT++TG KN + G T +ATF+ A F+ K+M FENTAG + QAVA R
Sbjct: 85 GXGPKKTVITGNKNFVDGYKTMRSATFTTVAPDFMAKSMGFENTAGASKHQAVALR 252
Score = 45.8 bits (107), Expect(2) = 2e-17
Identities = 21/29 (72%), Positives = 23/29 (78%)
Frame = +3
Query: 288 VIYVKAGVYDEYITVPKEAVNILMYGDGP 316
VIYVKAGVYDEYI + K+ NILMYG P
Sbjct: 9 VIYVKAGVYDEYIQIDKKKPNILMYGXWP 95
>TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase (Fragment)
, partial (43%)
Length = 564
Score = 81.3 bits (199), Expect = 4e-16
Identities = 44/113 (38%), Positives = 62/113 (53%), Gaps = 3/113 (2%)
Frame = +3
Query: 473 SYLGRPWQNESKAVIMESTIGDFIHQDGWTTWPEEQNKPEKHHENTCYFAEYANTGPGAN 532
+YLGRPW+ S+ V M S IGD +HQ GW W +T Y+ EY N GPGA
Sbjct: 30 TYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTT------FALDTLYYGEYMNYGPGAA 191
Query: 533 VARRVKWKGYKGVISRSEATKYTASIWLDAGPKTAPKSAVEWLHDLH---VPH 582
V +RV W GY+ + S EA+++T + ++ G P + V +L L +PH
Sbjct: 192 VGQRVNWPGYRVITSALEASRFTVAQFI-LGATWLPSTGVAFLSGLST*IIPH 347
>BP050971
Length = 477
Score = 79.3 bits (194), Expect = 2e-15
Identities = 36/92 (39%), Positives = 56/92 (60%)
Frame = -1
Query: 466 PEKFTVRSYLGRPWQNESKAVIMESTIGDFIHQDGWTTWPEEQNKPEKHHENTCYFAEYA 525
P ++ ++LGRPW+N S+ V MES + + IH +GW W + +++ +F EY
Sbjct: 462 PSNGSIPTFLGRPWKNFSRTVFMESFMSEMIHPEGWLEW-----ETYTTYDDPLFFGEYP 298
Query: 526 NTGPGANVARRVKWKGYKGVISRSEATKYTAS 557
N GPG+ VA RVKW+GY V++ S A +T +
Sbjct: 297 NKGPGSGVANRVKWRGYH-VLNNSPAMDFTVN 205
>AV765593
Length = 501
Score = 78.2 bits (191), Expect = 4e-15
Identities = 44/131 (33%), Positives = 69/131 (52%)
Frame = -1
Query: 448 NTGIVIQDCNIIPEAALVPEKFTVRSYLGRPWQNESKAVIMESTIGDFIHQDGWTTWPEE 507
+TG I +C I L +YLGRPW+ S+ V M++++ + I GW W E
Sbjct: 498 DTGTSIHNCTIRAADDLASSNGATATYLGRPWKEYSRTVYMQTSMDNVIDSAGWRAWDGE 319
Query: 508 QNKPEKHHENTCYFAEYANTGPGANVARRVKWKGYKGVISRSEATKYTASIWLDAGPKTA 567
+T Y+AE+ N+GPG+N RV W+GY VI+ ++A +T S +L G
Sbjct: 318 ------FALSTLYYAEFNNSGPGSNTNGRVTWQGYH-VINATDAANFTVSNFL-LGDDWL 163
Query: 568 PKSAVEWLHDL 578
P++ V + + L
Sbjct: 162 PQTGVSYTNTL 130
>TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase (Fragment)
, partial (24%)
Length = 693
Score = 75.1 bits (183), Expect = 3e-14
Identities = 42/120 (35%), Positives = 57/120 (47%)
Frame = +2
Query: 466 PEKFTVRSYLGRPWQNESKAVIMESTIGDFIHQDGWTTWPEEQNKPEKHHENTCYFAEYA 525
P K++ +YLGRPW+ S+ V M+S+I D I GW W NT + EY
Sbjct: 5 PVKYSFPTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEW------SGNFALNTLVYREYQ 166
Query: 526 NTGPGANVARRVKWKGYKGVISRSEATKYTASIWLDAGPKTAPKSAVEWLHDLHVPHYLG 585
GPGA ++RV WKG K + S SEA +T ++ + WL P LG
Sbjct: 167 YPGPGAGTSKRVAWKGVKVITSASEAQAFTPGSFI---------AGSNWLGSTGFPFSLG 319
>AI967495
Length = 390
Score = 74.7 bits (182), Expect = 4e-14
Identities = 40/117 (34%), Positives = 60/117 (51%)
Frame = +1
Query: 390 VQTNRQFYRNCVISGTIDFIFGTSATLIQSSTIIVRKGNYDHNEYNVIVADGSPLVNMNT 449
V RQFY+ C I GT+D IFG +A + Q+ I +K + N+I A G NT
Sbjct: 16 VHAQRQFYKQCQIYGTVDLIFGNAAVVFQNCKIFAKKPL--DGQANMITAQGRDDPFQNT 189
Query: 450 GIVIQDCNIIPEAALVPEKFTVRSYLGRPWQNESKAVIMESTIGDFIHQDGWTTWPE 506
GI I + I L P + LGRPWQ S+ V++++ + + GW++W +
Sbjct: 190 GITIHNSEIRAAPDLKPVVNKHNTSLGRPWQQYSRVVVLKTFMDTLVSPLGWSSWDD 360
>TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precursor
(Pectinesterase) (Pectin methylesterase) (Fragment) ,
partial (33%)
Length = 586
Score = 74.3 bits (181), Expect = 5e-14
Identities = 32/97 (32%), Positives = 55/97 (55%), Gaps = 6/97 (6%)
Frame = +3
Query: 470 TVRSYLGRPWQNESKAVIMESTIGDFIHQDGWTTWPEEQNKPEKHHENTCYFAEYANTGP 529
++++YLGRPW+ S+ ++++S+I I GW W + K T Y+ EY N+G
Sbjct: 9 SIKTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQS----KDFLQTLYYGEYLNSGA 176
Query: 530 GANVARRVKWKGYKGVISRSEATKYT------ASIWL 560
GA +RV W G+ + + +EA+K+T ++WL
Sbjct: 177 GAGTGKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWL 287
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,166,324
Number of Sequences: 28460
Number of extensions: 111386
Number of successful extensions: 595
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of query: 588
length of database: 4,897,600
effective HSP length: 95
effective length of query: 493
effective length of database: 2,193,900
effective search space: 1081592700
effective search space used: 1081592700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144563.4