BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144541.17 - phase: 0 /pseudo
(375 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12091 weakly similar to GB|AAO64875.1|29028992|BT005940 At5g27... 92 1e-19
TC18452 weakly similar to GB|AAO64875.1|29028992|BT005940 At5g27... 84 5e-17
TC8778 similar to UP|O22512 (O22512) Grr1, partial (31%) 64 3e-11
CB827332 55 2e-08
BP072112 46 5e-08
TC12475 weakly similar to UP|O22512 (O22512) Grr1, partial (23%) 51 3e-07
TC14746 weakly similar to GB|AAG21976.1|10716947|AF263377 SKP1 i... 49 1e-06
AI967901 44 4e-05
TC13289 weakly similar to UP|O22512 (O22512) Grr1, partial (11%) 43 7e-05
TC18773 similar to PIR|T48087|T48087 transport inhibitor respons... 42 2e-04
TC10215 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor respon... 41 3e-04
TC16915 weakly similar to UP|Q9SDA8 (Q9SDA8) AT2G17020 protein (... 41 3e-04
TC20082 weakly similar to UP|AAR27072 (AAR27072) EIN3-binding F-... 39 0.001
TC15634 similar to UP|Q8LGK0 (Q8LGK0) F-box protein family, AtFB... 37 0.007
AV413122 37 0.007
TC19390 similar to UP|Q9LMR0 (Q9LMR0) F7H2.8 protein, partial (17%) 36 0.009
BP043924 36 0.009
TC13534 similar to UP|Q9FE83 (Q9FE83) Emb|CAB62116.1 (SKP1 inter... 34 0.045
TC19051 31 0.38
BP032005 30 0.50
>TC12091 weakly similar to GB|AAO64875.1|29028992|BT005940 At5g27920
{Arabidopsis thaliana;}, partial (9%)
Length = 534
Score = 92.4 bits (228), Expect = 1e-19
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +1
Query: 316 KRLQDAKLVYLVNVTIQGLELALISCCGRIKKVKLQRSLEFSISSEILETIHERGCKVRW 375
KRLQDAKLV+L VT+QGLELAL +CCGRIKKVKLQ SL F +SSEILET H R K+RW
Sbjct: 16 KRLQDAKLVHLAKVTVQGLELALRACCGRIKKVKLQSSLRFLLSSEILETFHARRSKIRW 195
>TC18452 weakly similar to GB|AAO64875.1|29028992|BT005940 At5g27920
{Arabidopsis thaliana;}, partial (11%)
Length = 698
Score = 83.6 bits (205), Expect = 5e-17
Identities = 43/82 (52%), Positives = 56/82 (67%)
Frame = +2
Query: 130 LKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNI 189
LK+ESC +V + IG C LEELD+TD + V+D LK +S CS+L LK+G+C NI
Sbjct: 5 LKMESCTLVPQEAFVLIGQKCHYLEELDITD-NEVDDEGLKSISNCSRLSSLKVGICLNI 181
Query: 190 SDIGLAHIACNCPKLTELDLYR 211
+D G+A+I C KL ELDLYR
Sbjct: 182 TDRGVAYIGMCCSKLKELDLYR 247
Score = 78.6 bits (192), Expect = 2e-15
Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 5/160 (3%)
Frame = +2
Query: 45 LKNLKHLSVIRID-GVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVV-GCCNLT 102
+ N LS +++ + ++D + IG C L EL L + G+T++GI + GC L
Sbjct: 128 ISNCSRLSSLKVGICLNITDRGVAYIGMCCSKLKELDLYRSTGITDLGISAIACGCPGLE 307
Query: 103 TLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCS 162
++ + C +TD ++ +++ C NL L++ C +VT IGL I +C L +D+ C
Sbjct: 308 IINTSYCTNITDGSLISLSK-CRNLKTLEIRGCLLVTSIGLASIAMNCKQLICVDIKKCY 484
Query: 163 GVND---IALKYLSRCSKLVRLKLGLCTNISDIGLAHIAC 199
++D I L Y S+ + + L T++ + LA I+C
Sbjct: 485 NIDDSGMIPLAYFSKSLRQINLSYSSVTDVGLLSLASISC 604
Score = 75.5 bits (184), Expect = 1e-14
Identities = 44/142 (30%), Positives = 74/142 (51%)
Frame = +2
Query: 68 IIGSNCKSLVELGLSKCIGVTNMGIMQVVGCCNLTTLDLTCCRFVTDAAISTIANSCPNL 127
+IG C L EL ++ V + G+ + C L++L + C +TD ++ I C L
Sbjct: 50 LIGQKCHYLEELDITDN-EVDDEGLKSISNCSRLSSLKVGICLNITDRGVAYIGMCCSKL 226
Query: 128 ACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCT 187
L L +T++G+ I C LE ++ + C+ + D +L LS+C L L++ C
Sbjct: 227 KELDLYRSTGITDLGISAIACGCPGLEIINTSYCTNITDGSLISLSKCRNLKTLEIRGCL 406
Query: 188 NISDIGLAHIACNCPKLTELDL 209
++ IGLA IA NC +L +D+
Sbjct: 407 LVTSIGLASIAMNCKQLICVDI 472
>TC8778 similar to UP|O22512 (O22512) Grr1, partial (31%)
Length = 877
Score = 64.3 bits (155), Expect = 3e-11
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 7/165 (4%)
Frame = +3
Query: 72 NCKSLVE-LGLSKCIGVTNMGIM--QVVGCCNLTTLDLTCCRFVTDAAISTIANSCPNLA 128
NC + ++ L L+ C G+ N+ + V+ C ++ +L + C DA I+ + CP L
Sbjct: 150 NCAAKLKVLSLASCYGIKNLNLRLPAVLPCGSIESLSIHDCPGFGDATIAVLGKLCPQLE 329
Query: 129 CLKLESCDMVTEIG-LYQIGSSCLMLEELDLTDCSGVND---IALKYLSRCSKLVRLKLG 184
++L +T+ G L + SS L ++L+ C+ + D ++L L CS V L L
Sbjct: 330 HVELNGLSGITDAGFLPLLESSGAGLVNVNLSGCTKLTDQVVLSLVKLHGCSLEV-LNLN 506
Query: 185 LCTNISDIGLAHIACNCPKLTELDLYRR*WASSTDNRMQQVGHAQ 229
C ISD L IA +CP L++LD+ R TD + + H +
Sbjct: 507 GCKKISDASLIAIAGSCPLLSDLDVSR---CGITDTGIAALAHGK 632
Score = 60.1 bits (144), Expect = 6e-10
Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Frame = +3
Query: 48 LKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGC--CNLTTLD 105
L+H+ + + G+ + F L ++ S+ LV + LS C +T+ ++ +V C+L L+
Sbjct: 324 LEHVELNGLSGITDAGF-LPLLESSGAGLVNVNLSGCTKLTDQVVLSLVKLHGCSLEVLN 500
Query: 106 LTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIG-SSCLMLEELDLTDCSGV 164
L C+ ++DA++ IA SCP L+ L + C +T+ G+ + L L+ L L C+ V
Sbjct: 501 LNGCKKISDASLIAIAGSCPLLSDLDVSRCG-ITDTGIAALAHGKQLNLKVLSLAGCTSV 677
Query: 165 NDIALKYLSRC-SKLVRLKLGLCTNIS 190
++ ++ L + S L L + C IS
Sbjct: 678 SNKGVRALKKLGSSLDGLNIKNCKGIS 758
Score = 55.1 bits (131), Expect = 2e-08
Identities = 29/113 (25%), Positives = 56/113 (48%), Gaps = 3/113 (2%)
Frame = +3
Query: 100 NLTTLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSC-LMLEELDL 158
N+ L C F++D + + A + P++ L LE C +T++G + + +C L+ L L
Sbjct: 3 NMKIFQLQKCAFLSDNGLVSFAKAAPSIESLYLEECHRITQLGFFGLLFNCAAKLKVLSL 182
Query: 159 TDCSGVNDIALKY--LSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDL 209
C G+ ++ L+ + C + L + C D +A + CP+L ++L
Sbjct: 183 ASCYGIKNLNLRLPAVLPCGSIESLSIHDCPGFGDATIAVLGKLCPQLEHVEL 341
>CB827332
Length = 511
Score = 54.7 bits (130), Expect = 2e-08
Identities = 37/154 (24%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Frame = +3
Query: 60 RVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCC--NLTTLDLTCCRFVTDAAI 117
++ D + + C +L L + +C V++ I + C NL L + C ++D+++
Sbjct: 9 KIGDETILSLAKFCDNLETLIIGRCRDVSDDAIKSLATACRTNLKNLRMDWCLNISDSSL 188
Query: 118 STIANSCPNLACLKLESCDMVTEIGLYQIGSS--CLMLEELDLTDCSGVNDIALKYL-SR 174
S I + C NL L + C+ V++ IGS L L+ L +++C + + L +
Sbjct: 189 SCILSQCRNLEALDIACCEEVSDAAFQNIGSGEPGLNLKILKVSNCPKITVTGIGILVGK 368
Query: 175 CSKLVRLKLGLCTNISDIGLAHIACNCPKLTELD 208
C+ L L + C +I+ GL + P+ +++
Sbjct: 369 CACLEYLDVRSCPHITKAGLDEAGFDFPQCCKVN 470
Score = 53.1 bits (126), Expect = 7e-08
Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 10/173 (5%)
Frame = +3
Query: 7 CNCVSPSGLLSVISGHEGLEQINAGHC-------LSELSAPLTNGLKNLKHLSVIRIDG- 58
C + +LS+ + LE + G C + L+ LKNL R+D
Sbjct: 3 CYKIGDETILSLAKFCDNLETLIIGRCRDVSDDAIKSLATACRTNLKNL------RMDWC 164
Query: 59 VRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCCNLTTLDLTCCRFVTDAAIS 118
+ +SD L I S C+ NL LD+ CC V+DAA
Sbjct: 165 LNISDSSLSCILSQCR-------------------------NLEALDIACCEEVSDAAFQ 269
Query: 119 TIANSCP--NLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIAL 169
I + P NL LK+ +C +T G+ + C LE LD+ C + L
Sbjct: 270 NIGSGEPGLNLKILKVSNCPKITVTGIGILVGKCACLEYLDVRSCPHITKAGL 428
Score = 40.4 bits (93), Expect = 5e-04
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +3
Query: 135 CDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLSRCSK--LVRLKLGLCTNISDI 192
C + + + + C LE L + C V+D A+K L+ + L L++ C NISD
Sbjct: 3 CYKIGDETILSLAKFCDNLETLIIGRCRDVSDDAIKSLATACRTNLKNLRMDWCLNISDS 182
Query: 193 GLAHIACNCPKLTELDLYRR*WASSTDNRMQQVGHAQPSI 232
L+ I C L LD+ +D Q +G +P +
Sbjct: 183 SLSCILSQCRNLEALDI--ACCEEVSDAAFQNIGSGEPGL 296
>BP072112
Length = 545
Score = 45.8 bits (107), Expect(2) = 5e-08
Identities = 24/69 (34%), Positives = 39/69 (55%), Gaps = 2/69 (2%)
Frame = -1
Query: 143 LYQIGSSCLMLEELDLTDC-SGVNDIALKYLSR-CSKLVRLKLGLCTNISDIGLAHIACN 200
L + S C L+ ++L C +D AL+ + + C++L L LG C N+ D+G+ +A
Sbjct: 257 LAYLASFCRRLKVMNLCGCVQAASDTALQAVGQYCNQLQSLNLGWCDNVCDVGVMSLAYG 78
Query: 201 CPKLTELDL 209
CP L +DL
Sbjct: 77 CPDLRSIDL 51
Score = 27.3 bits (59), Expect(2) = 5e-08
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 114 DAAISTIANSCPNLACLKLESCDMVTEIGLYQI 146
D+ + TIAN C +L L L +T+ LY I
Sbjct: 424 DSTVETIANCCRDLQILDLSQSFKLTDRSLYAI 326
>TC12475 weakly similar to UP|O22512 (O22512) Grr1, partial (23%)
Length = 501
Score = 51.2 bits (121), Expect = 3e-07
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 29/139 (20%)
Frame = +2
Query: 97 GCCNLTTLDLTCCRFVTDAAISTIANSCPNLAC--------------------------L 130
G L +L + CR VTD I + CPNL L
Sbjct: 83 GLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLENL 262
Query: 131 KLESCDMVTEIGLYQIGSSC-LMLEELDLTDCSGVND--IALKYLSRCSKLVRLKLGLCT 187
+LE C +T+ G + + +C L+ + + C G+ D + L +S C L L + C
Sbjct: 263 QLEECHRITQFGFFGVLFNCGAKLKAISMVSCYGIKDQNLVLSPISPCESLRSLSIRHCP 442
Query: 188 NISDIGLAHIACNCPKLTE 206
+ L+ + CP+L +
Sbjct: 443 EFGNATLSVLGKLCPQLQQ 499
Score = 28.5 bits (62), Expect = 1.9
Identities = 10/35 (28%), Positives = 19/35 (53%)
Frame = +2
Query: 177 KLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYR 211
KL L + C ++D+G+ + CP L + L++
Sbjct: 92 KLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHK 196
>TC14746 weakly similar to GB|AAG21976.1|10716947|AF263377 SKP1 interacting
partner 1 {Arabidopsis thaliana;}, partial (62%)
Length = 719
Score = 49.3 bits (116), Expect = 1e-06
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 110 RFVTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIAL 169
R +D +++ +A CPNL L + SC VT+ + +I +C L ELD++ C V +L
Sbjct: 372 RHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSL 551
Query: 170 KYLSR-CSKLVRLKLGL 185
+ R C L LK L
Sbjct: 552 ALIGRNCPNLKVLKRNL 602
Score = 48.5 bits (114), Expect = 2e-06
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Frame = +3
Query: 36 ELSAPLTNGLKNLKHLSVIRIDGVRV---SDFILQIIGSNCKSLVELGLSKCIGVTNMGI 92
E A + + L+++ + I + +R+ SD L ++ C +L L + C VT+ I
Sbjct: 294 EFEAKIDSMLRSVVQWTHIFLTQIRIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSI 473
Query: 93 MQV-VGCCNLTTLDLTCCRFVTDAAISTIANSCPNLACLK 131
++ V C L LD++ C VT +++ I +CPNL LK
Sbjct: 474 SRIAVNCPKLRELDISYCYDVTHKSLALIGRNCPNLKVLK 593
Score = 43.5 bits (101), Expect = 6e-05
Identities = 30/84 (35%), Positives = 39/84 (45%), Gaps = 6/84 (7%)
Frame = +3
Query: 98 CCNLTTLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELD 157
C NL L + C VTD +IS IA +CP L L + C VT L IG +C L+ L
Sbjct: 414 CPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALIGRNCPNLKVLK 593
Query: 158 ------LTDCSGVNDIALKYLSRC 175
L V + +YL+ C
Sbjct: 594 RNLMNWLDPSQHVGIVPDEYLNAC 665
Score = 39.3 bits (90), Expect = 0.001
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +3
Query: 151 LMLEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDL 209
+ L ++ + CS +AL RC L L + C +++D ++ IA NCPKL ELD+
Sbjct: 348 IFLTQIRIRHCSD-RSLAL-VAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDI 518
>AI967901
Length = 266
Score = 43.9 bits (102), Expect = 4e-05
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +1
Query: 120 IANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDC-SGVNDIALKYLSR-CSK 177
+++ C +L L + C ++ L + S C L+ L+L C +D AL + + C++
Sbjct: 25 LSHGCGDLIKLNISGCSAFSDNALAYLASFCRRLKVLNLCGCVQAASDTALHAVGQYCNQ 204
Query: 178 LVRLKLGLCTNISDIGLAHI 197
L L LG C N+ D+G+ ++
Sbjct: 205 LQSLNLGWCDNVCDVGVLNL 264
>TC13289 weakly similar to UP|O22512 (O22512) Grr1, partial (11%)
Length = 550
Score = 43.1 bits (100), Expect = 7e-05
Identities = 27/92 (29%), Positives = 48/92 (51%), Gaps = 3/92 (3%)
Frame = +3
Query: 51 LSVIRIDGVR-VSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGC--CNLTTLDLT 107
L V+ +DG + VSD L I +C+ L +L +S C +T+ GI + NL L L+
Sbjct: 72 LEVLNVDGCKNVSDASLMAIAEHCQLLCDLDVSNC-AITDAGIAALAHAEQLNLQILSLS 248
Query: 108 CCRFVTDAAISTIANSCPNLACLKLESCDMVT 139
C V+D ++ ++ L L ++ C+ ++
Sbjct: 249 GCTLVSDRSLPSLRKLGHTLLGLNIQHCNAIS 344
Score = 28.1 bits (61), Expect = 2.5
Identities = 17/49 (34%), Positives = 25/49 (50%)
Frame = +3
Query: 186 CTNISDIGLAHIACNCPKLTELDLYRR*WASSTDNRMQQVGHAQPSILQ 234
C N+SD L IA +C L +LD+ + TD + + HA+ LQ
Sbjct: 96 CKNVSDASLMAIAEHCQLLCDLDVSN---CAITDAGIAALAHAEQLNLQ 233
>TC18773 similar to PIR|T48087|T48087 transport inhibitor response protein
TIR1 [imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (50%)
Length = 927
Score = 42.0 bits (97), Expect = 2e-04
Identities = 35/103 (33%), Positives = 47/103 (44%), Gaps = 5/103 (4%)
Frame = +3
Query: 114 DAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLS 173
D + IA S N L L SC+ T GL I ++C L ELDL + S V DI +LS
Sbjct: 42 DDXLDLIAKSFKNFRVLVLISCEGFTTHGLAAIAANCRNLRELDLRE-SEVEDICGHWLS 218
Query: 174 R----CSKLVRLKLGLCTNISDI-GLAHIACNCPKLTELDLYR 211
+ L L + +N ++ L + CP L L L R
Sbjct: 219 HFPDSYNSLESLNISCLSNEVNLPALERLVSRCPNLQTLRLNR 347
Score = 40.4 bits (93), Expect = 5e-04
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Frame = +3
Query: 10 VSPSGLLSVISGHEGLEQINAGHCL--SELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQ 67
V PS L +V GL +N + S L + +L+ L V+ + D L
Sbjct: 513 VLPSYLPAVYPVCSGLTSLNLSYATIQSPDHIKLVSQCGSLQRLWVLDY----IEDAGLD 680
Query: 68 IIGSNCKSLVEL--------GLSKCIGVTNMGIMQVVGCCNLTTLDLTCCRFVTDAAIST 119
++ ++CK L EL GL + +T G++ V C L CR +++AA++T
Sbjct: 681 VLAASCKDLRELRVFPSDPFGLEPNVALTEEGLISVSEGCPKLQSVLYFCRQMSNAALNT 860
Query: 120 IANSCPNLACLKL 132
IA + PN+ +L
Sbjct: 861 IAQNRPNMTRFRL 899
>TC10215 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor response-like
protein, partial (43%)
Length = 837
Score = 41.2 bits (95), Expect = 3e-04
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Frame = +3
Query: 112 VTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKY 171
V+D ++ ++ S N L L SC+ T GL + ++C L ELDL + + V D ++
Sbjct: 84 VSDESLELLSRSFVNFKSLVLVSCEGFTTDGLAAVAANCRFLRELDLQE-NEVEDQKGQW 260
Query: 172 LS----RCSKLVRLKLGLCTNISDIG-LAHIACNCPKLTELDLYR 211
LS C+ LV L ++G L + P L L L R
Sbjct: 261 LSCFPDSCTSLVSLNFACLKGDVNLGALERLVARSPNLKSLRLNR 395
Score = 40.8 bits (94), Expect = 4e-04
Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 31/176 (17%)
Frame = +3
Query: 66 LQIIGSNCKSLVELGLSKCIGVTNMGIMQ--VVGCCNLTTLDLTCCRFVTDAAISTIANS 123
L +C SLV L + G N+G ++ V NL +L L R V A+ I
Sbjct: 261 LSCFPDSCTSLVSLNFACLKGDVNLGALERLVARSPNLKSLRLN--RSVPIEALQRILMQ 434
Query: 124 CPNLACLK--------------------LESCDMVTEIGLYQIGSSCL--------MLEE 155
P LA L L+S + + G ++G CL L
Sbjct: 435 APQLADLGIGSFVHNPFSDAFSKLKNTILKSKSITSLSGFLEVGPFCLPAMYPICRNLTA 614
Query: 156 LDLTDCSGVN-DIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLY 210
L+L+ +G++ + +K + C KL RL + C I D GL +A C +L EL ++
Sbjct: 615 LNLSYAAGIHGNELIKLIYHCGKLQRLWIMDC--IGDKGLGIVASTCKELQELRVF 776
>TC16915 weakly similar to UP|Q9SDA8 (Q9SDA8) AT2G17020 protein
(At2g17020/At2g17020), partial (29%)
Length = 1011
Score = 41.2 bits (95), Expect = 3e-04
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 12/179 (6%)
Frame = +3
Query: 8 NCVSPSGLLSVISGHEGLEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQ 67
N ++ +L ++S E L+ ++ +C S L + L L V+ +DG ++D L
Sbjct: 6 NLLTNHAVLRLVSNVE-LKILDLRYCRS-LGDDALQAIGTLTKLKVLLLDGSDITDAGLS 179
Query: 68 IIG-SNCKSLVELGLSKCIGVTNMGIMQVVGCCN---LTTLDLTCCRFVTDAAISTIANS 123
+ S SL L L C +T+ I + C L LDL+ ++D + +A S
Sbjct: 180 CLRPSVINSLYALSLRGCKRLTDKCIAVLFHGCGMLELRELDLSNLPNLSDNGVLMLAKS 359
Query: 124 CPNLACLKLESCDMVTEIGLYQIGSSCL--------MLEELDLTDCSGVNDIALKYLSR 174
L L++ C ++ + + + S + L LDL +C G+ ++ ++L +
Sbjct: 360 RILLFELRMRQCPLIGDTSVMALASMLVNEARWHGSSLRVLDLYNCGGITQLSFRWLKK 536
>TC20082 weakly similar to UP|AAR27072 (AAR27072) EIN3-binding F-box protein
2, partial (9%)
Length = 630
Score = 38.9 bits (89), Expect = 0.001
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Frame = +3
Query: 51 LSVIRIDGV-RVSDFILQIIGSNCKSLVELGLSKC-IGVTNMGIMQVVGCCNLTTLDLTC 108
L ++ +DG R++D L I NC L +L +SKC I + ++ G +L L L+
Sbjct: 72 LELLNLDGCWRITDASLVAIADNCLLLNDLDVSKCAITDAGLAVLSGAGQLSLQVLSLSG 251
Query: 109 CRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDC 161
C +++ +++ + L L L+ C IGSS + L +L C
Sbjct: 252 CCDLSNKSVAFLTKLGQTLLGLNLQHCS--------SIGSSTIELLVENLWRC 386
>TC15634 similar to UP|Q8LGK0 (Q8LGK0) F-box protein family, AtFBL4, partial
(13%)
Length = 613
Score = 36.6 bits (83), Expect = 0.007
Identities = 14/41 (34%), Positives = 23/41 (55%)
Frame = +1
Query: 124 CPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGV 164
CP + + + C +T++GL + SC MLE + CSG+
Sbjct: 1 CPLIREIVISHCRQITDVGLAHLVKSCTMLESCHMVYCSGI 123
Score = 35.0 bits (79), Expect = 0.020
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +1
Query: 98 CCNLTTLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEEL 156
C + + ++ CR +TD ++ + SC L + C +T G+ + SSCL ++++
Sbjct: 1 CPLIREIVISHCRQITDVGLAHLVKSCTMLESCHMVYCSGITSAGVATVVSSCLNIKKV 177
Score = 27.3 bits (59), Expect = 4.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 175 CSKLVRLKLGLCTNISDIGLAHIACNCPKL 204
C + + + C I+D+GLAH+ +C L
Sbjct: 1 CPLIREIVISHCRQITDVGLAHLVKSCTML 90
>AV413122
Length = 399
Score = 36.6 bits (83), Expect = 0.007
Identities = 20/47 (42%), Positives = 27/47 (56%)
Frame = +2
Query: 163 GVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDL 209
G +D+ S L RL+L C +ISD GL+ IA P+L ELD+
Sbjct: 143 GTDDLLDYITDSTSHLRRLRLACCYSISDEGLSEIAKKFPQLEELDI 283
>TC19390 similar to UP|Q9LMR0 (Q9LMR0) F7H2.8 protein, partial (17%)
Length = 579
Score = 36.2 bits (82), Expect = 0.009
Identities = 27/95 (28%), Positives = 45/95 (46%), Gaps = 4/95 (4%)
Frame = +2
Query: 43 NGLKNLKHLSVIRI----DGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGC 98
+G+KN+K LS + ++D L++I S L+ L +S +TN G+ +
Sbjct: 14 SGVKNIKDLSSLTCLNLSQNSNLTDKTLELI-SGLTGLISLNVSNS-RITNAGLRHLKTL 187
Query: 99 CNLTTLDLTCCRFVTDAAISTIANSCPNLACLKLE 133
NL +L L C+ + + PNLAC + E
Sbjct: 188 KNLRSLTLESCKVTANDIKKLKSTYLPNLACFRPE 292
>BP043924
Length = 546
Score = 36.2 bits (82), Expect = 0.009
Identities = 27/82 (32%), Positives = 44/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 60 RVSDFILQIIGSNCK-SLVELGLSKCIGVTNMGIMQV-VGCCNLTTLDLTCCRFVTDAAI 117
RV D L ++ ++ + +L + LS+ T G++ V V C NL LDL+ + DAA
Sbjct: 303 RVGDESLTLVAASYRETLRRVDLSRSRFFTGNGLLSVAVSCRNLVELDLSNATEIRDAAA 482
Query: 118 STIANSCPNLACLKLESCDMVT 139
+ +A + NL L L C ++T
Sbjct: 483 AAVARA-GNLRKLWLSRCKLIT 545
>TC13534 similar to UP|Q9FE83 (Q9FE83) Emb|CAB62116.1 (SKP1 interacting
partner 2) (SKIP2) (At5g67250), partial (27%)
Length = 524
Score = 33.9 bits (76), Expect = 0.045
Identities = 31/135 (22%), Positives = 55/135 (39%), Gaps = 2/135 (1%)
Frame = +1
Query: 18 VISGHEGLEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLV 77
+I G + L+ + CL + A L+ +G LV
Sbjct: 175 LIIGSKKLQTLKLIRCLGDWDATLST-------------------------VGRVNSGLV 279
Query: 78 ELGLSKCIGVTNMGIMQVVGCCNLTTLDLTCCRFVTDAAISTIANSCPNLACLKLES--C 135
E+ L K + V+++G+ V C NL TL L +D+ +S +A C L L ++
Sbjct: 280 EIHLEK-VQVSDVGLAGVSKCFNLETLHLVKTPECSDSGLSGVAERCKMLRKLHIDGWRI 456
Query: 136 DMVTEIGLYQIGSSC 150
+ + + GL + +C
Sbjct: 457 NRIGDDGLISVAKNC 501
>TC19051
Length = 448
Score = 30.8 bits (68), Expect = 0.38
Identities = 19/68 (27%), Positives = 31/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 69 IGSNCKSLVELGLSKCIGVTNMGIMQVVGCCN--LTTLDLTCCRFVTDAAISTIANSCPN 126
+ C SL L L +GVT+ + + C+ +TTLD+ C + + + P
Sbjct: 16 VAQGCTSLEFLSLFGIVGVTDKCLEALSKSCSDKITTLDVNGCIGIKKRSREELLQLFPY 195
Query: 127 LACLKLES 134
L C K+ S
Sbjct: 196 LKCFKVHS 219
>BP032005
Length = 449
Score = 30.4 bits (67), Expect = 0.50
Identities = 16/52 (30%), Positives = 24/52 (45%)
Frame = -2
Query: 124 CPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLSRC 175
CP L L L+ C + + G + S C E+ L DC G+++ L C
Sbjct: 439 CPALERLHLQKCQLRDKNGTGAVFSVCRAAREVILQDCWGLDNSVLSLAIIC 284
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.336 0.145 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,527,475
Number of Sequences: 28460
Number of extensions: 109600
Number of successful extensions: 910
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of query: 375
length of database: 4,897,600
effective HSP length: 92
effective length of query: 283
effective length of database: 2,279,280
effective search space: 645036240
effective search space used: 645036240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC144541.17