BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144541.15 - phase: 0
(593 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B pre... 218 6e-78
TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesteras... 248 3e-66
TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%) 210 6e-55
TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precu... 204 3e-53
TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precu... 135 2e-32
AU089161 69 1e-29
TC19499 similar to UP|Q9SC90 (Q9SC90) Pectin methyl-esterase PER... 117 7e-27
AI967495 104 5e-23
AV426815 99 2e-21
BP050971 98 3e-21
CN825195 96 2e-20
AV765593 91 7e-19
TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase ... 90 9e-19
TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase ... 89 2e-18
TC11594 similar to UP|Q9FXW9 (Q9FXW9) Pectin methylesterase-like... 89 3e-18
BF177669 86 2e-17
TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isof... 85 3e-17
BP033848 84 6e-17
BP039243 78 5e-15
AU089094 78 5e-15
>TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B precursor
(Pectin methylesterase) (PE) , partial (54%)
Length = 1145
Score = 218 bits (555), Expect(2) = 6e-78
Identities = 99/188 (52%), Positives = 141/188 (74%)
Frame = +2
Query: 276 DGSGNFTTITEALKHVPKKNLKPFVIYIKEGVYKEYVEVTKTMTHVVFIGDGGRKTRITG 335
DGSGN+TT+ EA+ P ++K FVIY+K+GVY+EY E+ K +++ +GDG T I+G
Sbjct: 29 DGSGNYTTVMEAVLAAPDYSMKRFVIYVKKGVYEEYAEIKKKKWNIMMVGDGMDVTVISG 208
Query: 336 NKNFIDGVGTFKTASVAITGDFFVGIGIGFENSAGPEKHQAVALRVQSDRSIFYKCRMDG 395
N++F DG TFK+A+ A++G F+ GI F+N+AGPEKHQAVALR SD ++F++C + G
Sbjct: 209 NRSFGDGWTTFKSATFAVSGRGFIARGITFQNTAGPEKHQAVALRSDSDLAVFFRCSITG 388
Query: 396 YQDTLYAHTMRQFYRDCIISGTIDFVFGDSIAVLQNCTFVVRKPLENQQCIVTAQGRKEK 455
YQD+LY HTMRQFY++C I+GT+DF+FGD+ AV QNC RK L++Q+ +TAQGRK+
Sbjct: 389 YQDSLYPHTMRQFYKECRITGTVDFIFGDATAVFQNCNIQARKGLQDQKNTITAQGRKDP 568
Query: 456 NQPTGLII 463
Q +G +
Sbjct: 569 GQSSGFFV 592
Score = 90.5 bits (223), Expect(2) = 6e-78
Identities = 42/116 (36%), Positives = 66/116 (56%)
Frame = +3
Query: 467 SIVADPKYYPVRLKNKAYLARPWKDFSRTIFLDTYIGDMITPEGYMPWQTPAGITGTDTC 526
+I AD + P + YL RPWK++SRT+F+ +++ D+++ +G++ W T + DT
Sbjct: 603 NITADSELLPSVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNT----SFDDTL 770
Query: 527 YYGEYNNRGPGSDVKQRVKWQGVKTITSEGAASFVPIRFFHGDDWIRVTRVPYSPG 582
+YGEY N G G+ V RVKW G + A F +F G+ W+ T V Y+ G
Sbjct: 771 FYGEYLNYGAGAGVGNRVKWGGYHVLNDSEAGKFTVNQFIEGNLWLPSTGVAYTGG 938
>TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase ,
partial (29%)
Length = 934
Score = 248 bits (632), Expect = 3e-66
Identities = 127/259 (49%), Positives = 163/259 (62%), Gaps = 6/259 (2%)
Frame = +2
Query: 330 KTRITGNKNFIDGVGTFKTASVAITGDFFVGIGIGFENSAGPEKHQAVALRVQSDRSIFY 389
KT ITG KNF DGV T +TA+ A F+ I FEN+AGP HQAVALR Q D+S F
Sbjct: 11 KTIITGRKNFADGVKTMQTATFANQAPGFIAKAITFENTAGPNGHQAVALRNQGDQSAFV 190
Query: 390 KCRMDGYQDTLYAHTMRQFYRDCIISGTIDFVFGDSIAVLQNCTFVVRKPLENQQCIVTA 449
C + GYQDTLY T RQFYR+C+ISGTIDF+FG S ++Q+ VVRKP +NQ VTA
Sbjct: 191 GCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQHSIIVVRKPNDNQFNTVTA 370
Query: 450 QGRKEKNQPTGLIIQGGSIVADPKYYPVRLKNKAYLARPWKDFSRTIFLDTYIGDMITPE 509
G KN PTG++IQ IV + +PVR K K+YL RPWK++SRT+ +++ +GD I PE
Sbjct: 371 DGTPTKNMPTGIVIQDCEIVPEAALFPVRFKIKSYLGRPWKEYSRTVVMESTLGDFIHPE 550
Query: 510 GYMPWQTPAGITGTDTCYYGEYNNRGPGSDVKQRVKWQGVKTITSEG------AASFVPI 563
G+ PW AG DT YY E+ N GPG++ R+KW+G + + S A F+
Sbjct: 551 GWFPW---AGSFALDTLYYAEHANTGPGANTAGRIKWKGYRGVISRAEATQFTAGEFLKA 721
Query: 564 RFFHGDDWIRVTRVPYSPG 582
G DWI+ VP+ G
Sbjct: 722 GPRSGLDWIKALHVPHYLG 778
>TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%)
Length = 848
Score = 210 bits (534), Expect = 6e-55
Identities = 105/231 (45%), Positives = 149/231 (64%), Gaps = 4/231 (1%)
Frame = +1
Query: 271 VVVAKDGSGNFTTITEALKHVPKKNLKP----FVIYIKEGVYKEYVEVTKTMTHVVFIGD 326
+V +G+ N+T+I +A+ P + KP F+IY++EG Y+EYV V K +++ +GD
Sbjct: 157 IVSPYNGTDNYTSIGDAIAAAPN-HTKPQDGYFLIYVREGYYEEYVIVPKEKKNILLVGD 333
Query: 327 GGRKTRITGNKNFIDGVGTFKTASVAITGDFFVGIGIGFENSAGPEKHQAVALRVQSDRS 386
G KT ITGN + IDG TF +++ A++G+ F + + F N+AGP KHQAVA+R +D S
Sbjct: 334 GINKTIITGNHSVIDGWTTFNSSTFAVSGERFTAVDVTFRNTAGPAKHQAVAVRNNADLS 513
Query: 387 IFYKCRMDGYQDTLYAHTMRQFYRDCIISGTIDFVFGDSIAVLQNCTFVVRKPLENQQCI 446
FY+C +GYQDTLY H++RQFYR+C I GT+DF+FG++ V QNC RKPL Q+
Sbjct: 514 TFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPLPFQKNA 693
Query: 447 VTAQGRKEKNQPTGLIIQGGSIVADPKYYPVRLKNKAYLARPWKDFSRTIF 497
VTAQGR + NQ TG+ IQ +I A P +YL RPW+ + F
Sbjct: 694 VTAQGRTDPNQNTGISIQNCTIDAAPDLAAELNSTLSYLGRPWEGLFKDWF 846
>TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precursor
(Pectin methylesterase 3) (PE 3) , partial (34%)
Length = 773
Score = 204 bits (519), Expect = 3e-53
Identities = 98/208 (47%), Positives = 134/208 (64%), Gaps = 1/208 (0%)
Frame = +3
Query: 373 KHQAVALRVQSDRSIFYKCRMDGYQDTLYAHTMRQFYRDCIISGTIDFVFGDSIAVLQNC 432
KHQAVA+R SDRS+FY+C DG+QDTLYAH+ RQFYR+C I+GTIDF+FG++ ++ QNC
Sbjct: 6 KHQAVAMRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAASIFQNC 185
Query: 433 TFVVRKPLENQQCIVTAQGRKEKNQPTGLIIQGGSIVADPKYYPVRLKNKAYLARPWKDF 492
+ R+P+ NQ +TAQG+K+ NQ TG++IQ +I Y YL RPWKDF
Sbjct: 186 KIMPRQPMPNQFYTITAQGKKDPNQNTGIVIQKSTITPLESTYTA----PTYLGRPWKDF 353
Query: 493 SRTIFLDTYIGDMITPEGYMPWQTPAGITGTDTCYYGEYNNRGPGSDVKQRVKWQGVK-T 551
S T+ + + IG + P G++ W A + T +Y E+ N GPGSDV QRVKW G K T
Sbjct: 354 STTLIMQSEIGSFLKPVGWVSW--VANVDPPATIFYAEHQNSGPGSDVAQRVKWTGYKST 527
Query: 552 ITSEGAASFVPIRFFHGDDWIRVTRVPY 579
+T++ F F G +W+ T V +
Sbjct: 528 LTADDLGKFTLASFIQGPEWLPDTAVAF 611
>TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precursor
(Pectinesterase) , partial (59%)
Length = 1082
Score = 135 bits (339), Expect = 2e-32
Identities = 96/294 (32%), Positives = 143/294 (47%), Gaps = 9/294 (3%)
Frame = +3
Query: 75 SLIAHAGNITE--------PKELIKIAFNI-TIAKISEGLKKTHLLQEAEKDERTKQALD 125
S +AH +++ PK I I+ + + I E + KT ++ + R + AL
Sbjct: 267 SCLAHVSEVSQSPISATKDPKLNILISLMTKSTSHIQEAMVKTKAIKNRINNPREEAALS 446
Query: 126 TCKQVMQLSIDEFQRSLERFSNFDLNSLDRVLTSLKVWLSGAITYQETCLDAFENTTTDA 185
C+Q+M LSID S+ + + +S WLSG +T TCLD E +
Sbjct: 447 DCEQLMDLSIDRVWDSVMALTKDNTDSHQ----DAHAWLSGVLTNHATCLDGLEGPSRAL 614
Query: 186 GKKMKEVLQTSMHMSSNGLSIINQLSKTFEEMKQPAGRRLLKESVDGEEDVLGHGGDFEL 245
M+ ++ + S L+++ + P G G E ++ D +
Sbjct: 615 ---MEAEIEDLISRSKTSLALL-------VSVLAPKG---------GNEQIIDEPLDGDF 737
Query: 246 PEWVDDRAGVRKLLNKMTGRKLQAHVVVAKDGSGNFTTITEALKHVPKKNLKPFVIYIKE 305
P WV + R+LL G + A+VVVAKDGSG F T+ EA+ P +VIY+K+
Sbjct: 738 PSWVTRKD--RRLLESSVG-DVNANVVVAKDGSGRFKTVAEAVASAPDSGKTRYVIYVKK 908
Query: 306 GVYKEYVEVTKTMTHVVFIGDGGRKTRITGNKNFIDGVGTFKTASVAITGDFFV 359
G YKE +E+ K T+V+ GDG T ITGN N IDG TFK+A+VA GD F+
Sbjct: 909 GTYKENIEIGKKKTNVMLTGDGMDATIITGNLNVIDGSTTFKSATVAAVGDGFI 1070
>AU089161
Length = 400
Score = 69.3 bits (168), Expect(3) = 1e-29
Identities = 29/48 (60%), Positives = 37/48 (76%)
Frame = +2
Query: 382 QSDRSIFYKCRMDGYQDTLYAHTMRQFYRDCIISGTIDFVFGDSIAVL 429
+ DRS F+ C + GYQDTLYAH RQFYR+C ISGT+DF+FG S ++
Sbjct: 257 KXDRSAFFDCAISGYQDTLYAHAHRQFYRNCEISGTVDFIFGYSTLLI 400
Score = 66.6 bits (161), Expect(3) = 1e-29
Identities = 32/58 (55%), Positives = 40/58 (68%)
Frame = +1
Query: 325 GDGGRKTRITGNKNFIDGVGTFKTASVAITGDFFVGIGIGFENSAGPEKHQAVALRVQ 382
G G +KT ITGNKNF+DG T ++A+ F+ +GFEN+AG KHQAVALRVQ
Sbjct: 85 GXGPKKTVITGNKNFVDGYKTMRSATFTTVAPDFMAKSMGFENTAGASKHQAVALRVQ 258
Score = 31.2 bits (69), Expect(3) = 1e-29
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = +3
Query: 300 VIYIKEGVYKEYVEVTKTMTHVVFIG 325
VIY+K GVY EY+++ K +++ G
Sbjct: 9 VIYVKAGVYDEYIQIDKKKPNILMYG 86
>TC19499 similar to UP|Q9SC90 (Q9SC90) Pectin methyl-esterase PER precursor
, partial (4%)
Length = 480
Score = 117 bits (292), Expect = 7e-27
Identities = 54/81 (66%), Positives = 62/81 (75%), Gaps = 1/81 (1%)
Frame = +3
Query: 502 IGDMITPEGYMPWQTPAG-ITGTDTCYYGEYNNRGPGSDVKQRVKWQGVKTITSEGAASF 560
IGD+ITP+GYMP Q G + G DTCYY E+NNRGPGSD +RVKW GVKT+TS+ A SF
Sbjct: 3 IGDLITPDGYMPCQLMDGTLAGMDTCYYAEFNNRGPGSDQSKRVKWPGVKTLTSDVAISF 182
Query: 561 VPIRFFHGDDWIRVTRVPYSP 581
P RFF GDDWI+VTRV P
Sbjct: 183 SPSRFFRGDDWIKVTRVTLQP 245
>AI967495
Length = 390
Score = 104 bits (259), Expect = 5e-23
Identities = 46/112 (41%), Positives = 67/112 (59%)
Frame = +1
Query: 403 HTMRQFYRDCIISGTIDFVFGDSIAVLQNCTFVVRKPLENQQCIVTAQGRKEKNQPTGLI 462
H RQFY+ C I GT+D +FG++ V QNC +KPL+ Q ++TAQGR + Q TG+
Sbjct: 19 HAQRQFYKQCQIYGTVDLIFGNAAVVFQNCKIFAKKPLDGQANMITAQGRDDPFQNTGIT 198
Query: 463 IQGGSIVADPKYYPVRLKNKAYLARPWKDFSRTIFLDTYIGDMITPEGYMPW 514
I I A P PV K+ L RPW+ +SR + L T++ +++P G+ W
Sbjct: 199 IHNSEIRAAPDLKPVVNKHNTSLGRPWQQYSRVVVLKTFMDTLVSPLGWSSW 354
>AV426815
Length = 391
Score = 99.0 bits (245), Expect = 2e-21
Identities = 54/113 (47%), Positives = 75/113 (65%)
Frame = +3
Query: 246 PEWVDDRAGVRKLLNKMTGRKLQAHVVVAKDGSGNFTTITEALKHVPKKNLKPFVIYIKE 305
PEW+ A R+LL T ++A VVVA DGSGNF T++ A+ P+K+ +VI IK
Sbjct: 66 PEWIS--AADRRLLQAGT---VKADVVVAADGSGNFKTVSAAVAAAPEKSKTRYVIKIKA 230
Query: 306 GVYKEYVEVTKTMTHVVFIGDGGRKTRITGNKNFIDGVGTFKTASVAITGDFF 358
GVY+E VEV K T+++F+GDG T ITG++N +DG TF +A+VA+ G F
Sbjct: 231 GVYRENVEVPKKKTNIMFLGDGRTTTIITGSRNVVDGSTTFHSATVAVVGGNF 389
>BP050971
Length = 477
Score = 98.2 bits (243), Expect = 3e-21
Identities = 45/112 (40%), Positives = 65/112 (57%)
Frame = -1
Query: 471 DPKYYPVRLKNKAYLARPWKDFSRTIFLDTYIGDMITPEGYMPWQTPAGITGTDTCYYGE 530
DP + P +L RPWK+FSRT+F+++++ +MI PEG++ W+T T D ++GE
Sbjct: 477 DPDFQPSNGSIPTFLGRPWKNFSRTVFMESFMSEMIHPEGWLEWETYT--TYDDPLFFGE 304
Query: 531 YNNRGPGSDVKQRVKWQGVKTITSEGAASFVPIRFFHGDDWIRVTRVPYSPG 582
Y N+GPGS V RVKW+G + + A F F GD W+ V Y G
Sbjct: 303 YPNKGPGSGVANRVKWRGYHVLNNSPAMDFTVNPFIKGDLWLPSPGVSYHAG 148
>CN825195
Length = 551
Score = 95.9 bits (237), Expect = 2e-20
Identities = 70/194 (36%), Positives = 104/194 (53%), Gaps = 2/194 (1%)
Frame = +2
Query: 168 ITYQETCLDAFENTTTDAGKKMKEVLQTSMHMSSNGLSIINQLSKTFEEMKQPAGRRLLK 227
+T Q+TC D F +T+ D +M L+ + SN L+I F + RRLL
Sbjct: 17 LTNQDTCADGFADTSGDVKDQMAVNLKDLSELVSNCLAIFAGAGDDFSGVPIQ-NRRLLA 193
Query: 228 ESVDGEEDVLGHGGDFELPEWVDDRAGVRKLLNKMTGRKLQAHVVVAKDGSGNFTTITEA 287
D P W++ R R+LL+ + +QA VVV+KDG+G TI EA
Sbjct: 194 MRDDN------------FPRWLNRRD--RRLLS-LPVSAMQADVVVSKDGNGTAKTIAEA 328
Query: 288 LKHVPKKNLKPFVIYIKEGVYKE-YVEVTKTMTHVVFIGDGGRKTRITGNKNFIDG-VGT 345
+K VP+ + F+IY++ G Y+E +++ + T+V+ IGDG KT ITG KN + G + T
Sbjct: 329 IKKVPEYGSRRFIIYVRAGRYEENNLKIGRKRTNVMIIGDGKGKTVITGGKNVMYGLLTT 508
Query: 346 FKTASVAITGDFFV 359
F TAS A +G F+
Sbjct: 509 FHTASFAASGAGFI 550
>AV765593
Length = 501
Score = 90.5 bits (223), Expect = 7e-19
Identities = 47/124 (37%), Positives = 63/124 (49%)
Frame = -1
Query: 457 QPTGLIIQGGSIVADPKYYPVRLKNKAYLARPWKDFSRTIFLDTYIGDMITPEGYMPWQT 516
Q TG I +I A YL RPWK++SRT+++ T + ++I G+ W
Sbjct: 501 QDTGTSIHNCTIRAADDLASSNGATATYLGRPWKEYSRTVYMQTSMDNVIDSAGWRAWD- 325
Query: 517 PAGITGTDTCYYGEYNNRGPGSDVKQRVKWQGVKTITSEGAASFVPIRFFHGDDWIRVTR 576
G T YY E+NN GPGS+ RV WQG I + AA+F F GDDW+ T
Sbjct: 324 --GEFALSTLYYAEFNNSGPGSNTNGRVTWQGYHVINATDAANFTVSNFLLGDDWLPQTG 151
Query: 577 VPYS 580
V Y+
Sbjct: 150 VSYT 139
>TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase (Fragment)
, partial (24%)
Length = 693
Score = 90.1 bits (222), Expect = 9e-19
Identities = 45/108 (41%), Positives = 62/108 (56%), Gaps = 1/108 (0%)
Frame = +2
Query: 476 PVRLKNKAYLARPWKDFSRTIFLDTYIGDMITPEGYMPWQTPAGITGTDTCYYGEYNNRG 535
PV+ YL RPWK++SRT+F+ + I D+I P G+ W +G +T Y EY G
Sbjct: 5 PVKYSFPTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEW---SGNFALNTLVYREYQYPG 175
Query: 536 PGSDVKQRVKWQGVKTITSEG-AASFVPIRFFHGDDWIRVTRVPYSPG 582
PG+ +RV W+GVK ITS A +F P F G +W+ T P+S G
Sbjct: 176 PGAGTSKRVAWKGVKVITSASEAQAFTPGSFIAGSNWLGSTGFPFSLG 319
>TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase (Fragment)
, partial (43%)
Length = 564
Score = 89.0 bits (219), Expect = 2e-18
Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +3
Query: 482 KAYLARPWKDFSRTIFLDTYIGDMITPEGYMPWQTPAGITGTDTCYYGEYNNRGPGSDVK 541
+ YL RPWK +SRT+++ +YIGD + G++ W T + DT YYGEY N GPG+ V
Sbjct: 27 ETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFAL---DTLYYGEYMNYGPGAAVG 197
Query: 542 QRVKWQGVKTITSEGAAS-FVPIRFFHGDDWIRVTRVPYSPG 582
QRV W G + ITS AS F +F G W+ T V + G
Sbjct: 198 QRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSG 323
>TC11594 similar to UP|Q9FXW9 (Q9FXW9) Pectin methylesterase-like protein,
partial (18%)
Length = 532
Score = 88.6 bits (218), Expect = 3e-18
Identities = 39/92 (42%), Positives = 56/92 (60%)
Frame = +3
Query: 481 NKAYLARPWKDFSRTIFLDTYIGDMITPEGYMPWQTPAGITGTDTCYYGEYNNRGPGSDV 540
+K YL RPWK++SRT+F+ + + ++TP+G+MPW G T YYGE+ N GPGSD+
Sbjct: 60 HKNYLGRPWKEYSRTVFIHSLLEALVTPQGWMPWN---GEFALKTLYYGEFENSGPGSDL 230
Query: 541 KQRVKWQGVKTITSEGAASFVPIRFFHGDDWI 572
RV W + +E ++ F GDDWI
Sbjct: 231 SLRVSWS--SKVPAEHVLTYSAENFIQGDDWI 320
>BF177669
Length = 336
Score = 85.5 bits (210), Expect = 2e-17
Identities = 36/79 (45%), Positives = 53/79 (66%)
Frame = +3
Query: 482 KAYLARPWKDFSRTIFLDTYIGDMITPEGYMPWQTPAGITGTDTCYYGEYNNRGPGSDVK 541
+ YL RPWK++S T+ + + +G I+P G++PW G + DT +Y EY N G G+ K
Sbjct: 96 QTYLGRPWKNYSTTVVMQSTLGSFISPNGWLPW---VGNSAPDTIFYAEYQNVGQGASTK 266
Query: 542 QRVKWQGVKTITSEGAASF 560
RVKW+G+KTITS+ A+ F
Sbjct: 267 NRVKWKGLKTITSKQASKF 323
>TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isoform alpha
(Fragment) , partial (32%)
Length = 592
Score = 85.1 bits (209), Expect = 3e-17
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Frame = +1
Query: 490 KDFSRTIFLDTYIGDMITPEGYMPWQTPAGITGTDTCYYGEYNNRGPGSDVKQRVKWQGV 549
K +SRT+FL +Y+ D+I P G++ W + DT YYGEY NRGPGS+ RVKW G
Sbjct: 1 KLYSRTVFLKSYMEDLIDPAGWLEWNDTFAL---DTLYYGEYQNRGPGSNPSARVKWGGY 171
Query: 550 KTITSEGAAS-FVPIRFFHGDDWIRVTRVPY 579
+ I S AS F +F G DW+ T +P+
Sbjct: 172 RVINSSTEASQFTVGQFIQGSDWLNSTGIPF 264
>BP033848
Length = 525
Score = 84.0 bits (206), Expect = 6e-17
Identities = 57/164 (34%), Positives = 83/164 (49%), Gaps = 10/164 (6%)
Frame = +2
Query: 163 WLSGAITYQETCLDAFENTTTDA----GKKMKEVLQTSMHMSSNGLSIINQLSKTFEEMK 218
WLS ++YQ++C++ FE+ + G+ + L ++ L I++ LS+ +
Sbjct: 50 WLSAVMSYQQSCMEGFEDGKSGEEAVKGQLQEGSLDQMGKLTGIALDIVSDLSRILQTFD 229
Query: 219 -----QPAGRRLLKESVDGEEDVLGHGGDFELPEWVDDRAGVRKLLNKMT-GRKLQAHVV 272
PA RRLL E + + H G LP W RKLL KM G K+ + V
Sbjct: 230 LKLDLNPASRRLL------EAEEVDHEG---LPSWFS--GADRKLLGKMKKGGKVTPNAV 376
Query: 273 VAKDGSGNFTTITEALKHVPKKNLKPFVIYIKEGVYKEYVEVTK 316
VAKDGSG F TI A+ PK ++IY++ GVY EY+ V K
Sbjct: 377 VAKDGSGKFKTIASAIASYPKGFKGRYIIYVRAGVYDEYITVPK 508
>BP039243
Length = 462
Score = 77.8 bits (190), Expect = 5e-15
Identities = 40/84 (47%), Positives = 54/84 (63%)
Frame = -2
Query: 268 QAHVVVAKDGSGNFTTITEALKHVPKKNLKPFVIYIKEGVYKEYVEVTKTMTHVVFIGDG 327
Q +VVAKDG+GNF I EA+ P FVI+IK G Y E VEV + T+V+F+GDG
Sbjct: 449 QFDLVVAKDGTGNFAPIGEAVAAAPNSRATRFVIHIKAGAYFENVEVIRKKTNVMFVGDG 270
Query: 328 GRKTRITGNKNFIDGVGTFKTASV 351
KT + ++N +DG TF +A+V
Sbjct: 269 IGKTVVKAHRNVVDGWTTFPSATV 198
>AU089094
Length = 639
Score = 77.8 bits (190), Expect = 5e-15
Identities = 53/200 (26%), Positives = 90/200 (44%), Gaps = 13/200 (6%)
Frame = +1
Query: 47 SKESHVSQSVKAVKTLCAPTDYKKECEDSLIAHAG-NITEPKELIKIAFNITIAKISEGL 105
S + V ++V+T+C TD +K C D+L + G + +PK I A + +
Sbjct: 4 SAPAEVQTQQRSVRTICQNTDDQKLCHDTLSSVKGVDAADPKAYIATAVKAASDSVIKAF 183
Query: 106 KKTHLL--QEAEKDERTKQALDTCKQVMQLSIDEFQRSLERFSNFDLNSLDRVLTSLKVW 163
+ L + KD K ALD CK ++Q ++ S + ++ + + + W
Sbjct: 184 NMSDRLTTEYGNKDHGIKMALDDCKDLLQSAMQSLDLSTTLVRDNNIQGVHNQIPDFRNW 363
Query: 164 LSGAITYQETCLDAFENTTTDAGKKMKEVLQTS-----MHMSSNGLSIINQLSKTFEEMK 218
L I+YQ+ C++ F+N D K +KE L T + + L I+ ++K +
Sbjct: 364 LGAVISYQQACMEGFDN-DXDGEKXIKEQLXTESMDHVXRIXAITLDIVTNMTKILXQFN 540
Query: 219 -----QPAGRRLLKESVDGE 233
+PA RRLL VD E
Sbjct: 541 LKLDLKPASRRLLXXDVDNE 600
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,943,052
Number of Sequences: 28460
Number of extensions: 111973
Number of successful extensions: 590
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of query: 593
length of database: 4,897,600
effective HSP length: 95
effective length of query: 498
effective length of database: 2,193,900
effective search space: 1092562200
effective search space used: 1092562200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144541.15