TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144541.14 - phase: 0 
         (63 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15762 similar to GB|BAA25822.1|3088342|AB007158 ribosomal prot...   103  9e-24
AV770854                                                               27  1.0
TC14520 similar to UP|Q8W194 (Q8W194) Zinc finger protein LSD2, ...    25  2.3
TC8542 similar to UP|RK1_PEA (P49208) 50S ribosomal protein L1, ...    25  3.9
TC13854                                                                24  6.6
TC9150 similar to UP|Q9M6E4 (Q9M6E4) Poly(A)-binding protein (Fr...    23  8.6

>TC15762 similar to GB|BAA25822.1|3088342|AB007158 ribosomal protein S23
          {Homo sapiens;} , partial (24%)
          Length = 572

 Score =  103 bits (256), Expect = 9e-24
 Identities = 56/65 (86%), Positives = 57/65 (87%), Gaps = 5/65 (7%)
 Frame = +1

Query: 4  ERSSSPVQLSKFLGRNKDDGV-----RRSAVSGKKILLKLDKTKEDKEAESKRNELLNFL 58
          ERSSSPVQLSKFL R KDDGV     RRSAVSGKKILLKL+KTKEDK AESKRNELLNFL
Sbjct: 25 ERSSSPVQLSKFLARGKDDGVKDDGVRRSAVSGKKILLKLEKTKEDKAAESKRNELLNFL 204

Query: 59 NASFD 63
          NASFD
Sbjct: 205NASFD 219


>AV770854 
          Length = 477

 Score = 26.6 bits (57), Expect = 1.0
 Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
 Frame = +1

Query: 13  SKFLGRN-KDDGVRRSAVSGKKILLKLDKTKEDKEAESKRNELLNF 57
           S +LG+  KD+   R   SGK  + K    ++ K   S R+EL NF
Sbjct: 241 SSYLGKAIKDENSMRGCRSGKVPIFKTTMRQKLKTHSSSRSELDNF 378


>TC14520 similar to UP|Q8W194 (Q8W194) Zinc finger protein LSD2, partial
          (84%)
          Length = 1112

 Score = 25.4 bits (54), Expect = 2.3
 Identities = 14/37 (37%), Positives = 18/37 (47%)
 Frame = +2

Query: 16 LGRNKDDGVRRSAVSGKKILLKLDKTKEDKEAESKRN 52
          L   +DDG RRS+   KK  LK   +     +ES  N
Sbjct: 2  LDEEEDDGSRRSSKEEKKGSLKFSSSSSSFFSESNSN 112


>TC8542 similar to UP|RK1_PEA (P49208) 50S ribosomal protein L1,
           chloroplast precursor (Fragment), partial (53%)
          Length = 672

 Score = 24.6 bits (52), Expect = 3.9
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 7   SSPVQLSKFLGRNKDDGVRRSAVSGKKILLKLDKTKEDKEAESKR 51
           ++ V++++ L   +DDG  +       +LLK D+T+  +  E ++
Sbjct: 240 AAEVEVAETLDDKEDDGPSKPKTGKAALLLKRDRTRSKRFLEIQK 374


>TC13854 
          Length = 538

 Score = 23.9 bits (50), Expect = 6.6
 Identities = 8/22 (36%), Positives = 17/22 (76%)
 Frame = +1

Query: 15  FLGRNKDDGVRRSAVSGKKILL 36
           F+G+++D+ +  S +SGKK+ +
Sbjct: 409 FVGKSRDNLISASVLSGKKLCM 474


>TC9150 similar to UP|Q9M6E4 (Q9M6E4) Poly(A)-binding protein (Fragment),
           partial (65%)
          Length = 1191

 Score = 23.5 bits (49), Expect = 8.6
 Identities = 13/41 (31%), Positives = 22/41 (52%)
 Frame = +3

Query: 7   SSPVQLSKFLGRNKDDGVRRSAVSGKKILLKLDKTKEDKEA 47
           S+P + S+ LG      +    +SGK + + L + KED+ A
Sbjct: 99  STPEEASRALGE-----MNGKMISGKPLYVALAQRKEDRRA 206


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.307    0.129    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 721,095
Number of Sequences: 28460
Number of extensions: 5449
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of query: 63
length of database: 4,897,600
effective HSP length: 39
effective length of query: 24
effective length of database: 3,787,660
effective search space: 90903840
effective search space used: 90903840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 49 (23.5 bits)