TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144540.4 - phase: 0 
         (1225 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9096 similar to UP|Q9LD60 (Q9LD60) Spliceosomal-like protein, ...   243  2e-64
BP043338                                                               41  0.001
AV780136                                                               31  1.3
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)           31  1.3
AW164001                                                               29  3.9
TC12475 weakly similar to UP|O22512 (O22512) Grr1, partial (23%)       29  5.1
AV779384                                                               28  6.7
TC8393 weakly similar to GB|AAM61124.1|21536792|AY084557 prenyla...    28  6.7
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (...    28  6.7
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)           28  8.7
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr...    28  8.7
AV415169                                                               28  8.7

>TC9096 similar to UP|Q9LD60 (Q9LD60) Spliceosomal-like protein, partial
            (10%)
          Length = 718

 Score =  243 bits (619), Expect = 2e-64
 Identities = 114/124 (91%), Positives = 121/124 (96%)
 Frame = +2

Query: 1102 VQFHVGDVITSLQKASLVPGGGECIVYGTVMGSVGALHAFTSRDDVDFFSHLEMHMRQDN 1161
            VQF+VGDV+TSLQKASL+PGGGECIVYGT+MGS+GALHAFTSRDDVDFFSHLEMH+ QD 
Sbjct: 2    VQFNVGDVVTSLQKASLIPGGGECIVYGTIMGSIGALHAFTSRDDVDFFSHLEMHLMQDY 181

Query: 1162 PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVR 1221
            PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTP EIL+KLEEVR
Sbjct: 182  PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILRKLEEVR 361

Query: 1222 NKII 1225
            NKII
Sbjct: 362  NKII 373


>BP043338 
          Length = 463

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 15/120 (12%)
 Frame = +2

Query: 4   YNLTLQRPTGIVCAINGNFSGSDDGITQEIVVARGKVLE--LLRPDK----FGRIQSILS 57
           Y +T  +PT +  +  GNF+G  D   + ++VA+   LE  LL P +      ++Q IL 
Sbjct: 110 YVVTAHKPTKVTHSCVGNFTGPQD---RNLIVAKCTRLEIHLLSPQEGLQLQLQLQPILD 280

Query: 58  VQVFGTIRSLSQFRLTGAQKDFIVVGSDSGRIVILDYNKQK---------NVFDKIHQET 108
           V ++G I  L  FR  G  ++ + V ++  +  +L ++++          +V+D+I + T
Sbjct: 281 VPIYGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDRETHQLVTRAMGDVYDRIGRPT 460


>AV780136 
          Length = 558

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 15/41 (36%), Positives = 24/41 (57%)
 Frame = +2

Query: 121 QYLAIDPKGRAVMIAACEKKKLVYVLNRDSLARLTISSPLE 161
           QYL ++ + RA+M++AC     V+  +  S  R+T S P E
Sbjct: 401 QYLPVESRSRALMLSACPLSFKVFDPDLGSQTRITFSVPPE 523


>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
          Length = 1008

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 833 ENKTGSEDQMENGGEDEDNDDSLSDE 858
           E   G ED+ E G E+EDN+D   DE
Sbjct: 365 EEDDGGEDEEEEGVEEEDNEDEEEDE 288


>AW164001 
          Length = 447

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 839 EDQMENGGEDEDNDDSLSDEHYGYPKSESDKWVSCIRVLDPRTGNTTCLLE-LQENEAAF 897
           ED  ++  +D+D+DD       G+     D+W  C +    + G     L+ L     + 
Sbjct: 82  EDFDDDDDDDDDDDDDDEPATLGFVDKPKDEWSLCRQYFPSKAGGVPAWLDPLNIPSGSS 261

Query: 898 SICTV 902
           S+C +
Sbjct: 262 SVCDI 276


>TC12475 weakly similar to UP|O22512 (O22512) Grr1, partial (23%)
          Length = 501

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 717 AMLCLSSRPWLGYIHQGHFL 736
           + +CLS R W+ +IHQG F+
Sbjct: 190 SQVCLSVRQWVDFIHQGCFI 249


>AV779384 
          Length = 516

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 600 IAPVPKGRLRSRFLAVGSYDKTIRI-LSLDPDDCMQTLGIQSLSSAPESLL 649
           + P+P  R+ SRF+ +GS      I L+   + C +++ IQS SS+  S+L
Sbjct: 9   VKPLPSLRIMSRFILLGSSHNYFTINLTKISNLCWESVQIQSKSSSNFSVL 161


>TC8393 weakly similar to GB|AAM61124.1|21536792|AY084557 prenylated Rab
           receptor 2 {Arabidopsis thaliana;}, partial (78%)
          Length = 1012

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = -3

Query: 806 IESDQGALTAEEREAARKECFEAAHAGENKTGSEDQMEN-----GGEDEDNDDSLSDEHY 860
           +E  +GA    ER   R E  E    G  K G  D+ E       GEDE ND  + D   
Sbjct: 479 LEIGEGAAEENERAIRRAEEVEEC-PGSEKAGQGDERERIGEERHGEDERNDGVVVDAEV 303

Query: 861 G 861
           G
Sbjct: 302 G 300


>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
           protein) (Fragment), partial (15%)
          Length = 543

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 833 ENKTGSEDQMENGGEDEDNDDSLSDEHYGYPKSESD 868
           +N+   +D  E   EDED+DD   D+  G  + + D
Sbjct: 246 DNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDD 353


>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
          Length = 735

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +3

Query: 799 KRKLLVVIESDQGALTAEEREAARKECFEAAHAGENKTG---SEDQMENGGEDEDNDDS- 854
           K+KL +V + +QG    EE E   +E       G ++      ED+ E  GE+E+ ++  
Sbjct: 297 KKKLKLVEKLNQGVEEEEEDEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEV 476

Query: 855 -LSDEHYGYPKSESDK 869
            + DE     + E ++
Sbjct: 477 VVEDEQGNEDEDEDEE 524


>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
           1-like protein 3, partial (81%)
          Length = 1298

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 15/54 (27%), Positives = 26/54 (47%)
 Frame = +2

Query: 814 TAEEREAARKECFEAAHAGENKTGSEDQMENGGEDEDNDDSLSDEHYGYPKSES 867
           T E  ++  ++  E    G+     +D  +   ED+D+DD   +E  G  KS+S
Sbjct: 737 TGEAEQSDFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDEEGEGKSKSKS 898


>AV415169 
          Length = 419

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 116 RIVPGQYLAIDPKGRAVMIAACEKKKLVYVLNRDSLARLTISSPL 160
           R +P  +L  DPK +  M+        +Y+L++  L    + +PL
Sbjct: 351 RTIP*SHLIRDPKRKCCMMGTFSNTSALYILSKPLLTLFQLGTPL 217


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,774,096
Number of Sequences: 28460
Number of extensions: 245599
Number of successful extensions: 1146
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of query: 1225
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1124
effective length of database: 2,023,140
effective search space: 2274009360
effective search space used: 2274009360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)