BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144539.4 - phase: 0
(587 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partia... 159 2e-39
TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial... 139 1e-33
TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin r... 75 3e-14
TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional ... 72 2e-13
AV770800 69 2e-12
TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imp... 62 2e-10
CN825078 58 5e-09
AI967706 56 2e-08
TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial ... 53 1e-07
BF177544 47 1e-05
AV419737 46 2e-05
TC8686 similar to UP|O23724 (O23724) GAI protein, partial (22%) 45 3e-05
AV418844 44 1e-04
BP057332 42 3e-04
TC12650 similar to UP|O23210 (O23210) SCARECROW-like protein, pa... 41 5e-04
TC10172 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible gibberell... 40 8e-04
AV414168 38 0.005
AV421188 37 0.012
TC18636 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial... 35 0.026
TC16678 similar to UP|Q8GVE2 (Q8GVE2) Chitin-inducible gibberell... 34 0.076
>TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partial (47%)
Length = 1392
Score = 159 bits (401), Expect = 2e-39
Identities = 95/290 (32%), Positives = 148/290 (50%), Gaps = 2/290 (0%)
Frame = +2
Query: 298 EDLPFSQVSIFTCVQALLENVNDAKKIHVIDLEIRKGCQWTILMQALQSRNECPLELLKI 357
E P+ + + FT QA+LE ++HVID I +G QW LMQAL R P ++
Sbjct: 2 ETCPYLKFAHFTANQAILEAFQGKDRVHVIDFAINQGMQWPALMQALALRPGGP-PAFRL 178
Query: 358 TAIESGNSDTSKHIVEDTGKRLKDFAQSLNIPFSFDIVVVSDLLHIREELFKI--DSEET 415
T I D S H+ + G +L A+++++ F + V + L + + + EE+
Sbjct: 179 TGIGPPAPDNSDHL-QQVGWKLAQLAETIHVQFEYRGFVANSLADLDASMLDLRPPEEES 355
Query: 416 VAVYSQFALRSKIQQPDKLETIMRVIRTINPIVMVVAEIEANHNSKSFVNRFIEALFYFS 475
VAV S F L + +P LE + VIR + P ++ V E EA HN SF++RF E+L Y+S
Sbjct: 356 VAVNSVFELHKLLARPGALEKVFSVIRQVQPEILTVVEQEAGHNGASFLDRFTESLHYYS 535
Query: 476 AYFDCFETCMKGDEKNRFILESMYFSHGIRNIVAEEGAERKSRNVKIDVWRAFFTRFGMV 535
A FD E + +++ + E +Y I N+VA EG++R R+ + WR F G+
Sbjct: 536 ALFDSLEGSSAVESQDKAMTE-IYLGKQICNVVACEGSDRIERHETLTQWRTRFNSAGLS 712
Query: 536 ETELSMKSLYQAELVAKRFACGYACTFDMNGHCLLVGWKGTPINSVSVWK 585
L + QA ++ FA G + N CL +GW P+ + S W+
Sbjct: 713 PVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLTLGWHTRPLIATSAWQ 862
>TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (57%)
Length = 1406
Score = 139 bits (350), Expect = 1e-33
Identities = 99/357 (27%), Positives = 175/357 (48%), Gaps = 5/357 (1%)
Frame = +1
Query: 234 ESLSSKTGNPVKRVVHYFAEALCQRIDKETGRFSVSSNNMQKMESLFDPQEVSKDLNPAM 293
+ + S G+P +R+ Y E L R++ +S + + K +L Q K+L M
Sbjct: 1 QKMVSVAGDPSQRLGAYLLEGLRARLE-------LSGSLIYK--ALKCEQPTGKELMSYM 153
Query: 294 IALYEDLPFSQVSIFTCVQALLENVNDAKKIHVIDLEIRKGCQWTILMQALQSRNECPLE 353
LY+ P+ + + + A+ E + + +IH+ID +I +G QW +L+QAL R P
Sbjct: 154 HILYQICPYWKFAYISANAAIAEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGP-P 330
Query: 354 LLKITAIESGNSDTSKHI-VEDTGKRLKDFAQSLNIPFSFDIVVVSDLLHIREELFKIDS 412
++IT ++ S ++ +E G+RL DFA+S +PF F +S RE L +
Sbjct: 331 FIRITGVDDSQSFHARGGGLEIVGERLSDFARSYGVPFEFHSAAMSGCEVERENL-GVRP 507
Query: 413 EETVAVYSQFALR----SKIQQPDKLETIMRVIRTINPIVMVVAEIEANHNSKSFVNRFI 468
E +AV + L + + + ++R++++++P V+ +AE E+N N+ F NRF+
Sbjct: 508 GEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLAEQESNTNTSPFFNRFM 687
Query: 469 EALFYFSAYFDCFETCMKGDEKNRFILESMYFSHGIRNIVAEEGAERKSRNVKIDVWRAF 528
E L Y++A F+ + D+K R E + I N+VA EGAER R+ W+
Sbjct: 688 ETLEYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLR 867
Query: 529 FTRFGMVETELSMKSLYQAELVAKRFACGYACTFDMNGHCLLVGWKGTPINSVSVWK 585
F+ G + LS + + + + F Y + L +GW + + S W+
Sbjct: 868 FSMAGFKQWPLSSSVMTATQNLLRDFNHNY--RLEQRDGALCLGWMKRALVTSSAWR 1032
>TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin response
modulator, partial (33%)
Length = 556
Score = 75.1 bits (183), Expect = 3e-14
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Frame = +2
Query: 221 QQYERARKLLSQIESLSSKTGNPVKRVVHYFAEALCQRIDKETGRFSVSSNNMQKMESLF 280
+ ++ A L+ I +++ +++V YFA+AL +RI G F
Sbjct: 11 ENHKLADTLVKHIGVVAASQAGAMRKVASYFAQALARRI---YGIF-------------- 139
Query: 281 DPQEVSKDLNPAM-IALYEDLPFSQVSIFTCVQALLENVNDAKKIHVIDLEIRKGCQWTI 339
P V L+ + + YE P+ + + FT QA+LE A ++HV+D +++G QW
Sbjct: 140 -PDTVDSSLHDVLHMHFYESCPYLKFAHFTANQAILEAFATAGRVHVVDFGLKQGMQWPA 316
Query: 340 LMQALQSRNECPLELLKITAIESGNSDTSKHIVEDTGKRLKDFAQSLNIPFSFDIVVVSD 399
LMQAL R P ++T I D S ++ G +L AQ++ + F F V +
Sbjct: 317 LMQALALRPGGP-PTFRLTGIGPPQPDNS-DALQQVGWKLAQLAQTIGVQFEFRGFVCNS 490
Query: 400 LLHIREELFKIDSEETVAVYS 420
L + + +I E VAV S
Sbjct: 491 LADLDPNMLEIRPGEAVAVNS 553
>TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
regulator-like, partial (49%)
Length = 1051
Score = 72.4 bits (176), Expect = 2e-13
Identities = 61/239 (25%), Positives = 99/239 (40%), Gaps = 4/239 (1%)
Frame = +3
Query: 351 PLELLKITAIESGNSDTSKHIVEDTGKRLKDFAQSLNIPFSFDIVVVSDLLHIREELFKI 410
P+ + I E G + K + + G++ A+ L I F F +V L + E
Sbjct: 39 PVTVKVIAVAEDGADERLKTVGDMLGQQ----AERLRIGFEFKVVSCK-LAELTREALGC 203
Query: 411 DSEETVAVYSQFAL----RSKIQQPDKLETIMRVIRTINPIVMVVAEIEANHNSKSFVNR 466
+ +ET+AV F L + + + ++R ++ ++P V+ + E E N N+ FV R
Sbjct: 204 EPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKALSPRVVTLVEQELNTNTAPFVPR 383
Query: 467 FIEALFYFSAYFDCFETCMKGDEKNRFILESMYFSHGIRNIVAEEGAERKSRNVKIDVWR 526
E+ Y+SA FD E+ + + R +E S + N VA EG +R R WR
Sbjct: 384 VTESCSYYSALFDSIESTVARESLERVKIEQG-LSRKVGNSVACEGRDRVERCEVFGKWR 560
Query: 527 AFFTRFGMVETELSMKSLYQAELVAKRFACGYACTFDMNGHCLLVGWKGTPINSVSVWK 585
A R M L AE + + T + GW G + S W+
Sbjct: 561 A---RMSMAGFRLRPVGQRVAESITAQLGAENRVTVKEENGGICCGWVGRTLTVASAWR 728
>AV770800
Length = 514
Score = 69.3 bits (168), Expect = 2e-12
Identities = 41/131 (31%), Positives = 57/131 (43%)
Frame = -1
Query: 457 NHNSKSFVNRFIEALFYFSAYFDCFETCMKGDEKNRFILESMYFSHGIRNIVAEEGAERK 516
NHN + RF EAL Y+S FD E C +K L MY I N+V EG R
Sbjct: 514 NHNEDGLLERFTEALHYYSTVFDSLEGCPVEPDK---ALAEMYLQREICNVVCCEGTARV 344
Query: 517 SRNVKIDVWRAFFTRFGMVETELSMKSLYQAELVAKRFACGYACTFDMNGHCLLVGWKGT 576
R+ + WR + G L + QA ++ F+ C + G CL +GW
Sbjct: 343 ERHEPLAKWRERLGKAGFRPVHLGSDAFTQASMLFTLFSSEGYCVEEKEG-CLTLGWHSR 167
Query: 577 PINSVSVWKFI 587
P + S W+ +
Sbjct: 166 PPLAASAWQVV 134
>TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(27%)
Length = 711
Score = 62.4 bits (150), Expect = 2e-10
Identities = 36/144 (25%), Positives = 67/144 (46%)
Frame = +3
Query: 442 RTINPIVMVVAEIEANHNSKSFVNRFIEALFYFSAYFDCFETCMKGDEKNRFILESMYFS 501
+ ++P V+ + E E N N+ F+ RF+E + Y+ A F+ + + + K R +E +
Sbjct: 6 KCLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYQAVFESIDVVLPREHKERINVEQHCLA 185
Query: 502 HGIRNIVAEEGAERKSRNVKIDVWRAFFTRFGMVETELSMKSLYQAELVAKRFACGYACT 561
+ N+VA EGAER R+ ++ WR F G L+ + + + + Y T
Sbjct: 186 REVVNLVACEGAERVERHELLNKWRMRFASAGFTPYPLNSYINSSIKDLLESYRGHY--T 359
Query: 562 FDMNGHCLLVGWKGTPINSVSVWK 585
+ L +GW + + W+
Sbjct: 360 LEERDGALFLGWMNQVLVASCAWR 431
>CN825078
Length = 650
Score = 57.8 bits (138), Expect = 5e-09
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 7/184 (3%)
Frame = +3
Query: 228 KLLSQIESLSSKTGNPVKRVVHYFAEALCQRIDKETGRFSVSSNNMQKMESLFDPQEVSK 287
+L+ + S S G P++R+ Y E L R + S N++ + +P+ +
Sbjct: 36 QLIEKARSAVSINGEPIQRLGAYMVEGLVARKE-------ASGNSIYHALNCREPE--GE 188
Query: 288 DLNPAMIALYEDLPFSQVSIFTCVQALLENVNDAKKIHVIDLEIRKGCQWTILMQALQSR 347
+L M L+E P+ + A+ E + +IH+ID +I +G QW L+QAL +R
Sbjct: 189 ELLSYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAAR 368
Query: 348 NECPLELLKITAIESGNSDTSK-HIVEDTGKRLKDFAQSLNIPFSFDIV------VVSDL 400
++IT I+ S ++ ++ GKRL ++ IP F V V D+
Sbjct: 369 -PGGAPHVRITGIDDPVSKYARGDGLDIVGKRLALMSEKFGIPVEFHGVPVFGPDVTRDM 545
Query: 401 LHIR 404
L IR
Sbjct: 546 LDIR 557
>AI967706
Length = 357
Score = 55.8 bits (133), Expect = 2e-08
Identities = 27/81 (33%), Positives = 49/81 (60%)
Frame = +2
Query: 435 ETIMRVIRTINPIVMVVAEIEANHNSKSFVNRFIEALFYFSAYFDCFETCMKGDEKNRFI 494
+ ++R+++++NP ++ V E + N N+ F+ RFI A Y+SA FD + + + ++R
Sbjct: 113 DQLLRMVKSLNPKLVTVVEQDMNTNTSPFLPRFIIAYEYYSAVFDSLDATLPRESQDRVN 292
Query: 495 LESMYFSHGIRNIVAEEGAER 515
+E + I NIVA EG +R
Sbjct: 293 VERQCLARDIVNIVACEGEDR 355
>TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial (16%)
Length = 670
Score = 53.1 bits (126), Expect = 1e-07
Identities = 27/92 (29%), Positives = 42/92 (45%)
Frame = +1
Query: 494 ILESMYFSHGIRNIVAEEGAERKSRNVKIDVWRAFFTRFGMVETELSMKSLYQAELVAKR 553
++ +Y I N+VA EG +R R+ + WR G L + QA ++
Sbjct: 46 VMTEVYLGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFNPVHLGSNAFKQASMLLAL 225
Query: 554 FACGYACTFDMNGHCLLVGWKGTPINSVSVWK 585
FA G + N CL++GW P+ + S WK
Sbjct: 226 FAGGDGYRVEENNGCLMLGWHTRPLIATSAWK 321
>BF177544
Length = 318
Score = 46.6 bits (109), Expect = 1e-05
Identities = 18/62 (29%), Positives = 40/62 (64%)
Frame = +3
Query: 435 ETIMRVIRTINPIVMVVAEIEANHNSKSFVNRFIEALFYFSAYFDCFETCMKGDEKNRFI 494
+ ++R+++++NP ++ V E + N N+ F+ RF+EA Y+SA F+ + + + ++R
Sbjct: 129 DQLLRLVKSLNPKLVTVVEQDVNTNTAPFLQRFVEAYKYYSAVFESLDITLPRESQDRMN 308
Query: 495 LE 496
+E
Sbjct: 309 VE 314
>AV419737
Length = 410
Score = 45.8 bits (107), Expect = 2e-05
Identities = 37/132 (28%), Positives = 53/132 (40%)
Frame = +3
Query: 206 SLAESLLACAEKVGYQQYERARKLLSQIESLSSKTGNPVKRVVHYFAEALCQRIDKETGR 265
S+ + L AE + A+ +L+++ S G P R Y EAL +
Sbjct: 51 SIFDQLYKTAELIEAGNPVHAQGILARLNHQLSPNGKPFHRAAFYMKEALQSMLHSNGHN 230
Query: 266 FSVSSNNMQKMESLFDPQEVSKDLNPAMIALYEDLPFSQVSIFTCVQALLENVNDAKKIH 325
F F P + A + E P Q + FTC QAL+E V +IH
Sbjct: 231 FLT-----------FSPISFIFKIG-AYKSFSEISPVLQFANFTCNQALIEAVERFDRIH 374
Query: 326 VIDLEIRKGCQW 337
+ID +I G QW
Sbjct: 375 IIDFDIGFGVQW 410
>TC8686 similar to UP|O23724 (O23724) GAI protein, partial (22%)
Length = 786
Score = 45.1 bits (105), Expect = 3e-05
Identities = 29/89 (32%), Positives = 44/89 (48%), Gaps = 3/89 (3%)
Frame = +1
Query: 174 SSSSSKSASGLILNHPFGFSFSG---LSDEEKENVSLAESLLACAEKVGYQQYERARKLL 230
S SSSK + P+ S + + D ++ + L SL+ACAE V A L+
Sbjct: 445 SPSSSKRTKTSSSSSPYAESSTRSVVVVDSQENGIRLVHSLMACAEAVDRSNLAVAEALV 624
Query: 231 SQIESLSSKTGNPVKRVVHYFAEALCQRI 259
QI L++ +++V YFAE L +RI
Sbjct: 625 KQIGHLAASQEGAMRKVATYFAEGLARRI 711
>AV418844
Length = 284
Score = 43.5 bits (101), Expect = 1e-04
Identities = 23/71 (32%), Positives = 40/71 (55%), Gaps = 1/71 (1%)
Frame = +1
Query: 324 IHVIDLEIRKGCQWTILMQALQSRNECPLELLKITAIESGNSD-TSKHIVEDTGKRLKDF 382
+H+ID I G QW L+++L R+ P L ++T IE VE+TG+RL+++
Sbjct: 16 VHIIDFGICYGFQWPCLIKSLSERHGGPPRL-RVTGIELPRPGFRPAERVEETGRRLENY 192
Query: 383 AQSLNIPFSFD 393
+ +PF ++
Sbjct: 193 CKKFKVPFEYN 225
>BP057332
Length = 494
Score = 42.0 bits (97), Expect = 3e-04
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = -2
Query: 488 DEKNRFILESMYFSHGIRNIVAEEGAERKSRNVKIDVWRAFFTRFGMVETELSMK-SLYQ 546
++K + E F N++A EGAER R W+ R G + L+ + S
Sbjct: 490 EDKYXLMFEEGLFGRDAVNVIACEGAERVERPETYKQWQVRNRRPGFKQLPLAPELSSRV 311
Query: 547 AELVAKRFACGYACTFDMNGHCLLVGWKGTPINSVSVW 584
E+V K + + D +G +L GWKG +++VS W
Sbjct: 310 KEMVKKEYHKDFVV--DEDGKWVLQGWKGRILHAVSCW 203
>TC12650 similar to UP|O23210 (O23210) SCARECROW-like protein, partial (23%)
Length = 414
Score = 41.2 bits (95), Expect = 5e-04
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Frame = +2
Query: 204 NVSLAESLLACAEKVGYQQYERARKLLSQI-ESLSSKTGNPVKRVVHYFAEALCQRIDKE 262
N E L+ A+ Q + A+ +L ++ + L S +G P+ R +F +AL +
Sbjct: 47 NWDFIEELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSLLS-- 220
Query: 263 TGRFSVSSNNMQKMESLFDPQEVSKDLNPAMIALYEDLPFSQVSIFTCVQALLENVNDAK 322
SN L E+ + + A P SIFT QALLE ++ +
Sbjct: 221 ------GSNRTNAPPRLSSMAEIVQSIR-IFKAFSGISPIPMFSIFTTNQALLEALHGSL 379
Query: 323 KIHVIDLEI 331
+HV+D EI
Sbjct: 380 FMHVVDFEI 406
>TC10172 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible
gibberellin-responsive protein (OJ1127_E01.12 protein),
partial (4%)
Length = 691
Score = 40.4 bits (93), Expect = 8e-04
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +2
Query: 504 IRNIVAEEGAERKSRNVKIDVWRAFFTRFGMVE-TELSMKSLYQAELVAKRFACGYACTF 562
IRNI+A EG ER R+ WR G ++ + L Q+ + K ++C
Sbjct: 2 IRNIIACEGRERAERHESFAKWRKLMVEQGGFRCMGVTERELVQSRFLLKMYSCENYSVM 181
Query: 563 ---DMNGHCLLVGWKGTPINSVSVW 584
+ G L +GW P+ +VS W
Sbjct: 182 KQEEDGGEGLTLGWLDQPLYTVSAW 256
>AV414168
Length = 208
Score = 37.7 bits (86), Expect = 0.005
Identities = 17/49 (34%), Positives = 32/49 (64%)
Frame = +1
Query: 313 ALLENVNDAKKIHVIDLEIRKGCQWTILMQALQSRNECPLELLKITAIE 361
A+ E + + +++H+ID +I +G QW L+QAL R P + ++IT ++
Sbjct: 31 AIAEAMKEEREVHIIDFQISQGTQWVSLIQALAHRPGGPPK-VRITGVD 174
>AV421188
Length = 199
Score = 36.6 bits (83), Expect = 0.012
Identities = 22/63 (34%), Positives = 37/63 (57%), Gaps = 3/63 (4%)
Frame = +2
Query: 336 QWTILMQALQSRNECPLELLKITAIE---SGNSDTSKHIVEDTGKRLKDFAQSLNIPFSF 392
QW IL++ L R+ P +L KIT IE G T + +++TG RL ++ + N+PF +
Sbjct: 5 QWPILIKFLLERDGGPPKL-KITGIEFPLPGFRPTER--IDETGHRLTNYCKRFNVPFEY 175
Query: 393 DIV 395
+ +
Sbjct: 176 NAI 184
>TC18636 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (10%)
Length = 813
Score = 35.4 bits (80), Expect = 0.026
Identities = 24/97 (24%), Positives = 37/97 (37%)
Frame = +1
Query: 489 EKNRFILESMYFSHGIRNIVAEEGAERKSRNVKIDVWRAFFTRFGMVETELSMKSLYQAE 548
+KN E + I N++A EG ER + WR+ F+ G V LS
Sbjct: 1 DKNSISAEQHCVARDIVNMIACEGXERVEXHELFGKWRSRFSMXGFVPCPLSSSVTASVR 180
Query: 549 LVAKRFACGYACTFDMNGHCLLVGWKGTPINSVSVWK 585
+ F Y + L + WK + + S W+
Sbjct: 181 NILNEFNENY--RLEHKDVALYLTWKNRAMCTASAWR 285
>TC16678 similar to UP|Q8GVE2 (Q8GVE2) Chitin-inducible
gibberellin-responsive protein, partial (14%)
Length = 740
Score = 33.9 bits (76), Expect = 0.076
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +3
Query: 506 NIVAEEGAERKSRNVKIDVWRAFFTRFGMVETELSMKSLYQAELVAKRFAC--GYACTFD 563
N++A EG ER R+ W++ T G ++ LS Y ++ C + +
Sbjct: 12 NVIACEGKERVERHELFGKWKSRLTMAGFRQSPLSS---YVNSVIKNLLRCYSEHYTLIE 182
Query: 564 MNGHCLLVGWKGTPINSVSVW 584
+G +L+GWK + S S W
Sbjct: 183 KDG-AMLLGWKNRSLISASAW 242
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,590,034
Number of Sequences: 28460
Number of extensions: 123798
Number of successful extensions: 636
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of query: 587
length of database: 4,897,600
effective HSP length: 95
effective length of query: 492
effective length of database: 2,193,900
effective search space: 1079398800
effective search space used: 1079398800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144539.4