TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144517.16 - phase: 0 
         (445 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV419345                                                              262  1e-70
AV413463                                                              117  4e-27
TC14898                                                                30  0.61
BP049442                                                               29  1.8
TC14500 UP|Q9S7B1 (Q9S7B1) Nodule INCEPTION protein, complete          28  2.3
AV409033                                                               28  4.0
TC7901 homologue to UP|UPT2_SOLTU (Q8RU27) Alpha-1,4-glucan-prot...    27  5.2
TC17684                                                                27  8.9

>AV419345 
          Length = 416

 Score =  262 bits (669), Expect = 1e-70
 Identities = 123/138 (89%), Positives = 131/138 (94%)
 Frame = +3

Query: 224 YIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKAIGVTSDGETAKCKKVVC 283
           YIYPLYGLGELPQ FARLSAVYGGTYMLNKPECKVEFD +GK +GVTS+GETAKCKKVVC
Sbjct: 3   YIYPLYGLGELPQGFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 182

Query: 284 DPSYLPDKVQNVGKVARAICIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYAHN 343
           DPSYLP KV+ VGKVARAICIMSHPIP+TNDS S QVILPQKQLGRKSDMYLFCCSY+HN
Sbjct: 183 DPSYLPSKVRKVGKVARAICIMSHPIPNTNDSPSVQVILPQKQLGRKSDMYLFCCSYSHN 362

Query: 344 VAPKGKYIAFVTTEAETD 361
           VAPKGK+IAFV+TEAETD
Sbjct: 363 VAPKGKFIAFVSTEAETD 416


>AV413463 
          Length = 309

 Score =  117 bits (293), Expect = 4e-27
 Identities = 61/101 (60%), Positives = 75/101 (73%)
 Frame = +2

Query: 161 DLNQVTARQLISKYGLEDDTVDFIGHALALHLDDSYLDKPAKDFVDRVKTYAESLARFQG 220
           DL  +    L S +GL+ DT+ F+GHALAL+ D+SYL +PA + V +V+ YA SLAR  G
Sbjct: 2   DLTTLPMSGLYSHFGLQPDTIAFVGHALALYRDESYLSRPAVETVVKVQLYATSLAR-HG 178

Query: 221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFD 261
            SPY+YPLYGLGELPQAFARLSAV+GGTYML  P  +V  D
Sbjct: 179 RSPYLYPLYGLGELPQAFARLSAVHGGTYMLATPVDEVLTD 301


>TC14898 
          Length = 582

 Score = 30.4 bits (67), Expect = 0.61
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -1

Query: 428 KVLDLSVDLSAASAAAEE 445
           +VLDLSVDLSAASA  EE
Sbjct: 345 QVLDLSVDLSAASATTEE 292


>BP049442 
          Length = 494

 Score = 28.9 bits (63), Expect = 1.8
 Identities = 18/49 (36%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
 Frame = -2

Query: 5   YDVIVLGTGLKECILSGLLSVDGLKVLHM-DQNDYYGGASTSLNLTQLF 52
           +DV V+GTGL   +  GLL  D   V+H+ ++   +GG    L L   F
Sbjct: 334 FDVSVVGTGLAVIL*LGLLGEDQRLVVHLHERGGSFGGDGEVLELGFFF 188


>TC14500 UP|Q9S7B1 (Q9S7B1) Nodule INCEPTION protein, complete
          Length = 3001

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 207  RVK-TYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGK 265
            RVK T+A+   RF      + P++G  +L    AR   +   T +L K       D DG+
Sbjct: 2457 RVKATFADEKIRFS-----LQPIWGFSDLQLEIARRFNLNDVTNILLK-----YLDDDGE 2606

Query: 266  AIGVTSDGETAKCKKV 281
             + +  DG+  +CK +
Sbjct: 2607 WVVLACDGDLEECKDI 2654


>AV409033 
          Length = 418

 Score = 27.7 bits (60), Expect = 4.0
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
 Frame = +3

Query: 63  EELGSSREYNVDMIPKFMMANGALV----RVLIHTDVTKYLNFKAVDGSFVYNKGKIYKV 118
           E++ +S +   D IP +      L+     V +H D          +   VY +  +  V
Sbjct: 135 EQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADP---------ETDEVYAQMTLQPV 287

Query: 119 PATDVEALKSPLMGLFEKRRARKFFIYVQDYEANDPKSHEGLDL 162
              D +A+ +  MGL + R+  +FF   +   A+D  +H G  +
Sbjct: 288 NKYDKDAILASDMGLKQNRQPTEFF--CKTLTASDTSTHGGFSV 413


>TC7901 homologue to UP|UPT2_SOLTU (Q8RU27) Alpha-1,4-glucan-protein
           synthase [UDP-forming] 2  (UDP-glucose:protein
           transglucosylase 2) (UPTG 2) , partial (92%)
          Length = 1451

 Score = 27.3 bits (59), Expect = 5.2
 Identities = 46/223 (20%), Positives = 80/223 (35%), Gaps = 32/223 (14%)
 Frame = +1

Query: 94  DVTKYLNFKAVDGSFVYNKGKIYKV--PATDVEALKSPLMGLFEKRRARKFFIYVQDYEA 151
           D +K +N        +YN+  I ++  P     + K      F    ++K ++Y  D + 
Sbjct: 199 DPSKTINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDC 378

Query: 152 NDPKSHEGLDLNQVTA--RQLISK------------------------YGLEDDTVDFIG 185
              K   G D+N +    + L++                         + L +     + 
Sbjct: 379 FVAKDPSGKDINALEQHIKNLLTPSTPHFFNTLYDPYREGADFVRGYPFSLREGAPTAVS 558

Query: 186 HALALHLDD----SYLDKPAKDFVDRVKTYAESLARFQGGSPYIYPLYGLGELPQAFARL 241
           H L L++ D    + L KP     +R   Y +++     G+  ++P+ G+     AF R 
Sbjct: 559 HGLWLNIPDYDAPTQLVKPR----ERNTRYVDAVMTIPKGT--LFPMCGMN---LAFDR- 708

Query: 242 SAVYGGTYMLNKPECKVEFDGDGKAIGVTSDGETAKCKKVVCD 284
                    L  P       GDG+ IG   D     C KV+CD
Sbjct: 709 --------QLIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICD 813


>TC17684 
          Length = 721

 Score = 26.6 bits (57), Expect = 8.9
 Identities = 13/41 (31%), Positives = 24/41 (57%)
 Frame = +1

Query: 6   DVIVLGTGLKECILSGLLSVDGLKVLHMDQNDYYGGASTSL 46
           D +V+G+G    +++G+L+  G KVL  ++  Y    + SL
Sbjct: 475 DAVVVGSGSGGGLIAGILAKAGYKVLVKEKGGYTARNNLSL 597


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,660,190
Number of Sequences: 28460
Number of extensions: 84874
Number of successful extensions: 336
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of query: 445
length of database: 4,897,600
effective HSP length: 93
effective length of query: 352
effective length of database: 2,250,820
effective search space: 792288640
effective search space used: 792288640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)