BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144517.14 - phase: 0 /pseudo
(56 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE122436 47 1e-06
TC18683 weakly similar to UP|Q8H599 (Q8H599) OJ1634_B10.18 prote... 33 0.011
TC7889 similar to UP|Q40336 (Q40336) Proline-rich cell wall prot... 25 3.1
TC7888 similar to UP|Q40336 (Q40336) Proline-rich cell wall prot... 25 3.1
TC9193 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P... 25 4.1
AV410227 24 5.3
BF177843 24 6.9
TC11323 24 6.9
TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial ... 24 6.9
TC12985 similar to UP|Q93YH1 (Q93YH1) Na+/H+ antiporter, isoform... 24 6.9
AV424458 23 9.1
AV423672 23 9.1
>BE122436
Length = 371
Score = 46.6 bits (109), Expect = 1e-06
Identities = 28/50 (56%), Positives = 32/50 (64%), Gaps = 7/50 (14%)
Frame = -3
Query: 13 GSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGI-------EGIVGNGGR 55
GSEVTAG+GG + G VGIFVG +G GIV +G G VGNGGR
Sbjct: 363 GSEVTAGSGGRVDFGRVGIFVGIVGRDGIVIVGKGGRLAP*VGNVGNGGR 214
>TC18683 weakly similar to UP|Q8H599 (Q8H599) OJ1634_B10.18 protein, partial
(37%)
Length = 715
Score = 33.1 bits (74), Expect = 0.011
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +1
Query: 19 GNGGMLRDGIVG----IFVGRLGSGGIVSLGIEGIVGNGG 54
GNGG + GIVG + G G+GG V LG G GNGG
Sbjct: 415 GNGGNVNFGIVGNGGNVNFGIAGNGGSVGLGKLG*DGNGG 534
Score = 29.6 bits (65), Expect = 0.13
Identities = 21/43 (48%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Frame = +1
Query: 14 SEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGI--EGIVGNGG 54
S+V +GG R G VG R+G G VSLG +G VGNGG
Sbjct: 268 SQVDQFDGGEGRKGTVG----RVGREGSVSLGAVGKGNVGNGG 384
>TC7889 similar to UP|Q40336 (Q40336) Proline-rich cell wall protein,
partial (66%)
Length = 1158
Score = 25.0 bits (53), Expect = 3.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 27 GIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G+ G+ +G +G GG V++G +G G G
Sbjct: 437 GVGGVTIGGVGVGG-VTIGGDGTTGGSG 357
>TC7888 similar to UP|Q40336 (Q40336) Proline-rich cell wall protein,
partial (60%)
Length = 913
Score = 25.0 bits (53), Expect = 3.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 27 GIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G+ G+ +G +G GG V++G +G G G
Sbjct: 883 GVGGVTIGGVGVGG-VTIGGDGTTGGSG 803
>TC9193 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P11_13
{Arabidopsis thaliana;}, partial (59%)
Length = 1474
Score = 24.6 bits (52), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = +1
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIV 29
+GKVVG G E +G+G +RD +V
Sbjct: 262 QGKVVGGGGFLKPEDASGSGKRVRDDVV 345
>AV410227
Length = 428
Score = 24.3 bits (51), Expect = 5.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 8 IEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGR 55
+EG G E AG+GG G+ VG + G + + E V GGR
Sbjct: 284 MEGGGGEE--AGDGGEEGGGVGVGVVGEVERGDVGDVAEEEAVDGGGR 147
>BF177843
Length = 474
Score = 23.9 bits (50), Expect = 6.9
Identities = 13/44 (29%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Frame = -3
Query: 12 FGSEVTAGNGGM-LRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
F E+ G G + + +G+V + V G G +G++GN G
Sbjct: 190 FCDEIALG*GSVGVEEGVVAVAVAVAGGG-------DGVIGNAG 80
>TC11323
Length = 657
Score = 23.9 bits (50), Expect = 6.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 13 GSEVTAGNGGMLRDGIVGIFVG 34
G+ AG GG+LRDG G
Sbjct: 59 GNRGNAGGGGLLRDGSSNFIFG 124
>TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial (46%)
Length = 1127
Score = 23.9 bits (50), Expect = 6.9
Identities = 17/44 (38%), Positives = 23/44 (51%)
Frame = +3
Query: 11 RFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
+FG G+GG+ G +G G G GG+ LG G+ G GG
Sbjct: 492 KFGGMGMGGDGGL---GGLGGMGGMGGMGGMGGLG--GMEGLGG 608
>TC12985 similar to UP|Q93YH1 (Q93YH1) Na+/H+ antiporter, isoform 2, partial
(22%)
Length = 518
Score = 23.9 bits (50), Expect = 6.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 43 SLGIEGIVGNGGR 55
S+G+EG+V GGR
Sbjct: 98 SIGVEGVVARGGR 136
>AV424458
Length = 326
Score = 23.5 bits (49), Expect = 9.1
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -3
Query: 5 VVGIEG-RFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGN 52
VVG+ G F SEV NGG GG G EG++G+
Sbjct: 261 VVGVRGGEFSSEVAVQNGG----------------GGGCGGGDEGVIGS 163
>AV423672
Length = 281
Score = 23.5 bits (49), Expect = 9.1
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -2
Query: 5 VVGIEG-RFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGN 52
VVG+ G F SEV NGG GG G EG++G+
Sbjct: 163 VVGVRGGEFSSEVAVQNGG----------------GGGCGGGDEGVIGS 65
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.152 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 690,381
Number of Sequences: 28460
Number of extensions: 7130
Number of successful extensions: 55
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of query: 56
length of database: 4,897,600
effective HSP length: 32
effective length of query: 24
effective length of database: 3,986,880
effective search space: 95685120
effective search space used: 95685120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)
Medicago: description of AC144517.14