TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144515.17 - phase: 0 /pseudo
         (58 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP064097                                                               28  0.28
AW720255                                                               27  1.1
AV420512                                                               24  5.2
TC13871 similar to GB|AAM47330.1|21360429|AY113022 At1g79870/F19...    24  6.8
TC11416                                                                24  6.8
AV780945                                                               23  8.9
TC10028 weakly similar to UP|Q9LXX7 (Q9LXX7) Cytochrome P450-lik...    23  8.9

>BP064097 
          Length = 523

 Score = 28.5 bits (62), Expect = 0.28
 Identities = 10/24 (41%), Positives = 19/24 (78%)
 Frame = -1

Query: 35 QLLQIMCVLDPSCMIHMFIMNCKQ 58
          Q+L+I+CVL+ + + H+FI+ C +
Sbjct: 82 QILRILCVLENNYLSHIFILCCSK 11


>AW720255 
          Length = 532

 Score = 26.6 bits (57), Expect = 1.1
 Identities = 12/42 (28%), Positives = 25/42 (58%), Gaps = 2/42 (4%)
 Frame = -1

Query: 4   NEVHMLNVRPILSNLGEVDLVH--RNHTRPRRYQLLQIMCVL 43
           +E + LN+  +  N+ ++D+VH  R+ T   +  L+ ++C L
Sbjct: 391 SEKNSLNITKLRENVAKLDMVHVRRDATHVAQATLISLLCFL 266


>AV420512 
          Length = 423

 Score = 24.3 bits (51), Expect = 5.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 16 SNLGEVDLVHRNHTRPRRYQ 35
          +N+G  D + R+H RPR +Q
Sbjct: 72 NNVGPCDPLFRSHVRPRLHQ 13


>TC13871 similar to GB|AAM47330.1|21360429|AY113022 At1g79870/F19K16_17
           {Arabidopsis thaliana;}, partial (33%)
          Length = 404

 Score = 23.9 bits (50), Expect = 6.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 10  NVRPILSNLGEVDLVHRNHTRPR 32
           N  P+L  L EV+LVH +HT  R
Sbjct: 371 NTNPLLLTLVEVNLVH-SHTEAR 306


>TC11416 
          Length = 426

 Score = 23.9 bits (50), Expect = 6.8
 Identities = 14/47 (29%), Positives = 26/47 (54%), Gaps = 5/47 (10%)
 Frame = -1

Query: 5   EVHMLNVRPILSNL-----GEVDLVHRNHTRPRRYQLLQIMCVLDPS 46
           E+H+++   +  NL     G V+L      + RRYQ+L++ C++  S
Sbjct: 321 EIHLISGLGLPQNLQDQLNGVVNL*SPC*MKNRRYQMLKV*CIISSS 181


>AV780945 
          Length = 491

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 13  PILSNLGEVDLVHRNHTRPRRYQL 36
           PI ++L   +L+H    RPR +Q+
Sbjct: 337 PISTSLPHEELIHNRTNRPRIFQV 266


>TC10028 weakly similar to UP|Q9LXX7 (Q9LXX7) Cytochrome P450-like
          protein, partial (16%)
          Length = 874

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 25 HRNHTRPRRYQLLQIMCVLDPSCMI 49
          H+  T+P++ QL Q + +L   C++
Sbjct: 26 HKKETKPQKKQLCQAL*ILCNPCLL 100


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.334    0.142    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,239,199
Number of Sequences: 28460
Number of extensions: 15186
Number of successful extensions: 159
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of query: 58
length of database: 4,897,600
effective HSP length: 34
effective length of query: 24
effective length of database: 3,929,960
effective search space: 94319040
effective search space used: 94319040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 49 (23.5 bits)