TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144515.12 - phase: 0 
         (357 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP036096                                                               26  9.0
AV406717                                                               26  9.0

>BP036096 
          Length = 487

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 42  HVISLKNHIVSSPSKSLSLYNAS 64
           H +SLKNH+ S+ S S  +++ S
Sbjct: 401 HFLSLKNHLSSTSSSSYXIFHES 469


>AV406717 
          Length = 431

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (69%)
 Frame = -1

Query: 287 ESENLICYGECLGLGSR 303
           +S  L+CYG CL L SR
Sbjct: 200 QSSLLVCYGVCLNLNSR 150


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,796,313
Number of Sequences: 28460
Number of extensions: 95485
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of query: 357
length of database: 4,897,600
effective HSP length: 91
effective length of query: 266
effective length of database: 2,307,740
effective search space: 613858840
effective search space used: 613858840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)