TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144513.4 - phase: 0 /pseudo
         (1015 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV779571                                                               29  4.3
BP064229                                                               28  7.3
TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%)         28  9.6
AV422734                                                               28  9.6
TC11120 UP|Q84PP4 (Q84PP4) Transcription factor MYB102, complete       28  9.6

>AV779571 
          Length = 538

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = -2

Query: 18  IKNLSHVFSMVLSLILLLLIVLLVI 42
           I NL  ++ ++LSL+LLLL++LL++
Sbjct: 333 IANLLIIYHLLLSLLLLLLLLLLIV 259


>BP064229 
          Length = 484

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 382 LVLDLLFPLMLWRWLVTELIMICLV 406
           L+LDLLF L + RW++ E I  C++
Sbjct: 242 LLLDLLFTLPVSRWMMKEPIHYCIL 168


>TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%)
          Length = 425

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 11/19 (57%), Positives = 13/19 (67%)
 Frame = +2

Query: 962 HTRDLPTYGHLSNCPASHH 980
           HT    TYGH+S+ P SHH
Sbjct: 311 HTSHDVTYGHVSHPPQSHH 367


>AV422734 
          Length = 448

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 15/41 (36%), Positives = 26/41 (62%)
 Frame = -2

Query: 1   LPILMWFFSQKPNLIKLIKNLSHVFSMVLSLILLLLIVLLV 41
           L +L+    Q+  L+ L+  L H   +VL ++LLL+++LLV
Sbjct: 213 LLLLLQLL*QQEMLLLLLLLLKHQLLLVLLMLLLLMLMLLV 91


>TC11120 UP|Q84PP4 (Q84PP4) Transcription factor MYB102, complete
          Length = 1281

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 369 FMRSLLPILRRCLLVLDLLFPLMLWR 394
           F+ SL  +  RC+ ++D LFP M WR
Sbjct: 384 FLISLSVLPGRCVAIVDHLFPRMEWR 307


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.368    0.167    0.619 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,868,810
Number of Sequences: 28460
Number of extensions: 315873
Number of successful extensions: 5211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2920
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 2141
Number of HSP's gapped (non-prelim): 3412
length of query: 1015
length of database: 4,897,600
effective HSP length: 99
effective length of query: 916
effective length of database: 2,080,060
effective search space: 1905334960
effective search space used: 1905334960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 60 (27.7 bits)