TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144513.2 - phase: 0 
         (215 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW428921                                                               41  2e-04
AV414696                                                               37  0.002
NP459472 RAB7A [Lotus japonicus]                                       29  0.71
TC11542 similar to UP|O04335 (O04335) At2g30600 protein, partial...    29  0.71
BP043192                                                               28  1.2
TC9029 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase...    28  1.6
TC16363 UP|Q84RQ3 (Q84RQ3) Sucrose transporter 4 protein, complete     28  1.6
AU088761                                                               27  2.7
BG662016                                                               26  4.6
CB826711                                                               26  6.0

>AW428921 
          Length = 359

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 42/84 (49%), Gaps = 2/84 (2%)
 Frame = +2

Query: 12  VILLLFLLITGLGSVINASPCSN-CGDFEVPYPLSTNDDCGDKRYKIYCNNDSLE-FLSA 69
           +++ L LL+  + + +  SPC N CG   + YP    D CG  +++   N ++ E F   
Sbjct: 83  LVITLTLLLQAIPT-LTLSPCKNSCGTIPINYPFGLEDGCGAPQFRHMLNWNTTELFFET 259

Query: 70  TGTYYKILKIDTSANKLVIKPPNI 93
               YK+  I+   + +VI  P++
Sbjct: 260 PSGSYKVQSINYEKSSMVIYDPSM 331


>AV414696 
          Length = 270

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 24/69 (34%), Positives = 37/69 (52%), Gaps = 3/69 (4%)
 Frame = +1

Query: 8   SLKMVILLLFLLITGLGSVINASPCS-NCGDFEVPYPLSTNDDCGDKRYK--IYCNNDSL 64
           S+ ++ + LFLL     S+I A  C  NCG   + YP  +   CGD R++  + C+   L
Sbjct: 52  SVPLLSIFLFLL----PSLILAQICQRNCGQ-TLKYPFGSGPGCGDPRFQPHVTCSEQRL 216

Query: 65  EFLSATGTY 73
            F + TG+Y
Sbjct: 217 TFTTHTGSY 243


>NP459472 RAB7A [Lotus japonicus]
          Length = 618

 Score = 28.9 bits (63), Expect = 0.71
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 1   MYPCIWNSLKMVILLLFLLITGLGSVINASPCS 33
           ++ C+WNSLK+ +L++ +   G  S+ N   CS
Sbjct: 588 LWSCLWNSLKIYVLVMLI---G*SSLGNTKECS 499


>TC11542 similar to UP|O04335 (O04335) At2g30600 protein, partial (21%)
          Length = 756

 Score = 28.9 bits (63), Expect = 0.71
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 4   CIWNSLKMVILLLFLLITGLGSVINASPCS 33
           CIW  L    LL+FL       +++ASPCS
Sbjct: 326 CIWKLLFFFFLLIFLCHHTTLGILSASPCS 415


>BP043192 
          Length = 453

 Score = 28.1 bits (61), Expect = 1.2
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = -2

Query: 150 EEKVEEGNGCMNTLCC 165
           EEKV++G GC  T CC
Sbjct: 320 EEKVKQGTGCCCTCCC 273


>TC9029 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase, partial
            (73%)
          Length = 1636

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +3

Query: 38   FEVPYPLSTNDDCGDKRYKIYCNNDSLEFLSATGTYYKILKIDTS---ANKLVIKPPNIF 94
            F + Y    N+DCG K Y+     + L+F SA  + Y  ++I ++   +++ +  P +I+
Sbjct: 1152 FNLKYVAVGNEDCGKKNYR----GNYLKFYSAIRSAYPDIQIISNCDGSSRPLDHPADIY 1319

Query: 95   KHTCYSS 101
             +  Y++
Sbjct: 1320 DYHIYTN 1340


>TC16363 UP|Q84RQ3 (Q84RQ3) Sucrose transporter 4 protein, complete
          Length = 2164

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 14/38 (36%), Positives = 19/38 (49%)
 Frame = -3

Query: 140 CSSNSICRQFEEKVEEGNGCMNTLCCHYLKDSVMNSHK 177
           C++NS CR    K E  N    T+C   +  +V N HK
Sbjct: 833 CTTNSACRG---KCESKNPVPTTVCSSRIAKNVTNGHK 729


>AU088761 
          Length = 254

 Score = 26.9 bits (58), Expect = 2.7
 Identities = 20/59 (33%), Positives = 25/59 (41%), Gaps = 3/59 (5%)
 Frame = -2

Query: 113 SLPFNISTLNT---VMLLNCSDNILQSPLNCSSNSICRQFEEKVEEGNGCMNTLCCHYL 168
           SLPF    L +   +ML     + LQ+ L   S S            NGC N+  CHYL
Sbjct: 244 SLPFPTGLLKSFVVMMLKTLLPSFLQNLLAIFSASF----------SNGCSNSFLCHYL 98


>BG662016 
          Length = 459

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +1

Query: 113 SLPFNISTLNTVMLLNCSDNILQS-PLNCSSNSICRQFEEKVEEGNGCMNTLCCHY--LK 169
           SLP +I  L+ + LLN S N ++S P    + S   +      + +   +T+      LK
Sbjct: 31  SLPNSIGCLSKLKLLNVSGNFIESLPKTIENCSALEELNANFNKLSKLPDTIGFELINLK 210

Query: 170 DSVMNSHKIRLRVGSCTAYTCL 191
              +NS+K+ L   S +  T L
Sbjct: 211 KLAVNSNKLVLLPSSTSHLTAL 276


>CB826711 
          Length = 444

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = -1

Query: 3   PCIWNSLKMVILLLFLLITGLGSVINASPCS 33
           P    ++K++ILLLFLL+T   S+    P S
Sbjct: 366 PATATAVKIIILLLFLLLTFAHSLCRGFPHS 274


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,214,294
Number of Sequences: 28460
Number of extensions: 80524
Number of successful extensions: 415
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of query: 215
length of database: 4,897,600
effective HSP length: 86
effective length of query: 129
effective length of database: 2,450,040
effective search space: 316055160
effective search space used: 316055160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)