TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144503.9 + phase: 0 /pseudo
         (346 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12486                                                                45  8e-08
TC8765                                                                 31  0.35
BP062667                                                               27  3.9
AV416480                                                               27  3.9
BP045352                                                               27  3.9
TC8593 homologue to UP|AAR83877 (AAR83877) 60S ribosomal protein...    27  6.6
TC15259 homologue to UP|AAR83877 (AAR83877) 60S ribosomal protei...    26  8.6
TC14381 similar to UP|RNS2_ARATH (P42814) Ribonuclease 2 precurs...    26  8.6
BP046905                                                               26  8.6

>TC12486 
          Length = 742

 Score = 45.4 bits (106), Expect(2) = 8e-08
 Identities = 22/46 (47%), Positives = 30/46 (64%)
 Frame = +2

Query: 143 CMLFADVVLVGESREEVNGRLETWRQALEAYGFRLSRSTTEYMECN 188
           C L+ +V    E RE++N RL   RQ L+ YGF L++S  EYMEC+
Sbjct: 119 CELYVEV---RELREDINARLAICRQTLQTYGF*LNKSKAEYMECS 247



 Score = 26.9 bits (58), Expect(2) = 8e-08
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 120 LSPYLFTLVLDVLTEHIQELAPRCMLFAD 148
           LS Y F +VLD+L E I      CMLF +
Sbjct: 39  LSHYHFIVVLDMLIEQI*ATMQLCMLFVN 125


>TC8765 
          Length = 748

 Score = 30.8 bits (68), Expect = 0.35
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +3

Query: 316 VGVAPIVEKLVENRLR*FGHVERRPVDAVVR 346
           + V P V KL E RLR +GHV  R ++A+VR
Sbjct: 531 IWVVPNV*KLTEIRLRWYGHVPSRLMEALVR 623


>BP062667 
          Length = 528

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = -2

Query: 81  IAYIRAIKDMYEGASTSVRTQDGTTEDFP 109
           + ++  I D  +GAS++V T   TT  FP
Sbjct: 407 LGFVETIADALDGASSAVLTSASTTGSFP 321


>AV416480 
          Length = 410

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 167 RQALEAYGFRLSRSTTEYMECNFSGRRSRSTLEVKVGDHII 207
           R  L AYG ++  S++EY++ N S   S      +V DH +
Sbjct: 208 RGGLGAYGGKILGSSSEYVQSNISRYFSDPQYYFQVNDHYV 330


>BP045352 
          Length = 434

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 277 WAVKSQHENQVSVAEMRMLRWMSR 300
           W++KSQ    ++++   +LRW+S+
Sbjct: 407 WSIKSQRSKHMTISLNELLRWLSQ 336


>TC8593 homologue to UP|AAR83877 (AAR83877) 60S ribosomal protein L19,
           partial (80%)
          Length = 874

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 18/67 (26%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 29  LTMEAIYLLRRVIERYRTDKK-DLHLVFIDLEKTYDRV--PREILWKALEKKGVRIAYIR 85
           L M  + +LRR++ +YR  KK D H+      K    V   + +L +++ K     A  +
Sbjct: 307 LWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREK 486

Query: 86  AIKDMYE 92
            + D +E
Sbjct: 487 TLSDQFE 507


>TC15259 homologue to UP|AAR83877 (AAR83877) 60S ribosomal protein L19,
           partial (80%)
          Length = 956

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 18/67 (26%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 29  LTMEAIYLLRRVIERYRTDKK-DLHLVFIDLEKTYDRV--PREILWKALEKKGVRIAYIR 85
           L M  + +LRR++ +YR  KK D H+      K    V   + +L +++ K     A  +
Sbjct: 306 LWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKTKAEKAREK 485

Query: 86  AIKDMYE 92
            + D +E
Sbjct: 486 TLSDQFE 506


>TC14381 similar to UP|RNS2_ARATH (P42814) Ribonuclease 2 precursor  ,
           partial (75%)
          Length = 858

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 266 VRPALLYGTECWAVKSQHENQVSVAEMRMLRWMSRKTRHDR 306
           VRP  +YG  CW++     + +  A    L   SR  +  R
Sbjct: 314 VRPESMYGEYCWSIGPSAASVIGTAMASALAVSSRPLQRQR 192


>BP046905 
          Length = 538

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 5/74 (6%)
 Frame = -3

Query: 152 VGESREEVNGRLETWRQALEAYGF-----RLSRSTTEYMECNFSGRRSRSTLEVKVGDHI 206
           V ++    NG  ET +   E Y F      +     EYM    SG+  + +L+      I
Sbjct: 530 VFKTESPANGVAETLQIKEERYDFSEFLPEMIEERPEYMSRQLSGKEWKPSLDTIKEKKI 351

Query: 207 IPQVTRFKYLGSFV 220
             +++R+ +L SF+
Sbjct: 350 KKKLSRWFFLKSFI 309


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,394,536
Number of Sequences: 28460
Number of extensions: 66154
Number of successful extensions: 318
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of query: 346
length of database: 4,897,600
effective HSP length: 91
effective length of query: 255
effective length of database: 2,307,740
effective search space: 588473700
effective search space used: 588473700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)