BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144503.2 + phase: 0
(322 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV769785 263 2e-71
TC16633 similar to UP|AAPC_PENCL (Q40784) Possible apospory-asso... 214 2e-56
TC16390 similar to GB|AAM63374.1|21554299|AY086170 apospory-asso... 163 3e-41
TC10595 similar to UP|AAPC_PENCL (Q40784) Possible apospory-asso... 162 5e-41
BP046527 156 5e-39
TC17007 93 7e-20
TC18409 weakly similar to UP|Q944A5 (Q944A5) AT3g01590/F4P13_13,... 92 9e-20
TC18943 similar to GB|AAM63374.1|21554299|AY086170 apospory-asso... 83 7e-17
TC16617 similar to UP|Q9FJY6 (Q9FJY6) Apospory-associated protei... 48 3e-06
BP050115 47 3e-06
BP042459 41 2e-04
BI420290 27 3.6
TC13171 27 3.6
TC8540 similar to GB|AAM16209.1|20334906|AY094053 AT5g02020/T7H2... 27 3.6
TC8541 similar to GB|AAM16209.1|20334906|AY094053 AT5g02020/T7H2... 27 3.6
TC16098 homologue to UP|Q8LAQ5 (Q8LAQ5) Flower pigmentation prot... 27 4.6
TC9371 27 6.1
TC19927 weakly similar to UP|O80689 (O80689) F8K4.2 protein, par... 26 7.9
BP028625 26 7.9
AW720274 26 7.9
>AV769785
Length = 600
Score = 263 bits (673), Expect = 2e-71
Identities = 132/192 (68%), Positives = 149/192 (76%), Gaps = 3/192 (1%)
Frame = +1
Query: 1 MSRETMYVKHCMGVNGLEKIILRENRGFSAEVYLYGGQVTSWKNERGEELLFVSSKPEKE 60
MSRET+YV+ C GVNGL+KIILRE RGFS EVYLYGGQ+TSWKNE GEELLFVS K +
Sbjct: 58 MSRETVYVQQCKGVNGLDKIILREVRGFSCEVYLYGGQITSWKNELGEELLFVSGKANFK 237
Query: 61 VKKTNQYN---CFDMNNNKCRLILLLQDLYAEAFQYVFLKNKLWILDPNPPPFPTNSNSR 117
K+ + CF +N L Q+ F +N+LW LDPNPPPFPTNS SR
Sbjct: 238 PPKSIRGGIPICFPQFSNMGSLE-----------QHGFARNRLWTLDPNPPPFPTNSTSR 384
Query: 118 AFVDLVLKNSEDDTKNWPHRYEFRLRIALGPTGDLMLTSRIRNTNKDGKSFTFTFAYHTY 177
AF+DL+L NSE+DTKNWPHR+EFRLRIALGP GDLM+TSRIRNTN DGKSFTFTFAYHTY
Sbjct: 385 AFIDLILTNSEEDTKNWPHRFEFRLRIALGPGGDLMMTSRIRNTNTDGKSFTFTFAYHTY 564
Query: 178 LYVTDISEVRIE 189
YVTDISEVR+E
Sbjct: 565 FYVTDISEVRVE 600
>TC16633 similar to UP|AAPC_PENCL (Q40784) Possible apospory-associated
protein C, partial (53%)
Length = 615
Score = 214 bits (544), Expect = 2e-56
Identities = 114/206 (55%), Positives = 143/206 (69%), Gaps = 7/206 (3%)
Frame = +3
Query: 13 GVNGLEKIILRENR--GFSAEVYLYGGQVTSWKNERGEE-LLFVSSK----PEKEVKKTN 65
G+NGL+KI++R+ G SAEVYLYG VTSWKN+ GEE LLFVSSK P K ++
Sbjct: 33 GINGLDKILIRDATATGCSAEVYLYGAHVTSWKNDHGEEELLFVSSKSIFDPPKAIRGGI 212
Query: 66 QYNCFDMNNNKCRLILLLQDLYAEAFQYVFLKNKLWILDPNPPPFPTNSNSRAFVDLVLK 125
CF +N L + F +N+ W +D +PPPFPTN++ AFVDL+LK
Sbjct: 213 PI-CFPQFSNHGTLP-----------SHGFARNRFWTIDNDPPPFPTNASETAFVDLILK 356
Query: 126 NSEDDTKNWPHRYEFRLRIALGPTGDLMLTSRIRNTNKDGKSFTFTFAYHTYLYVTDISE 185
SEDD K WPH +EFR R+ALGP GDL+L SRIRNTN +G+ F+FTFA HTY V+DIS
Sbjct: 357 PSEDDMKIWPHSFEFRRRVALGPGGDLILKSRIRNTNNEGEPFSFTFANHTYFSVSDISG 536
Query: 186 VRIEGLETLDYLDSLKNRERFTEQGD 211
VR+EGL+TLDYLD+L+ +RFTE GD
Sbjct: 537 VRVEGLKTLDYLDNLQKMKRFTEHGD 614
>TC16390 similar to GB|AAM63374.1|21554299|AY086170 apospory-associated
protein C {Arabidopsis thaliana;}, partial (34%)
Length = 532
Score = 163 bits (413), Expect = 3e-41
Identities = 74/103 (71%), Positives = 87/103 (83%)
Frame = +3
Query: 205 RFTEQGDAITFEGEVDKVYLSTPTKIAIIDHERKRTFEIRKDGLPDAVVWNPWDKKSKII 264
RFTEQGDA+TFE EVD+VYL + +A++DHERKRTF IRK+GLPD VVWNPW+KKSK +
Sbjct: 3 RFTEQGDALTFESEVDRVYLDSCDVVAVLDHERKRTFMIRKEGLPDVVVWNPWEKKSKSV 182
Query: 265 SDLGDDEYKHMLCVQPACVEKAITLKPGEEWKGRQEISAVPSS 307
DLGD+EYKHMLCV A V K ITLKPGEEW+GR E+S VPS+
Sbjct: 183 VDLGDEEYKHMLCVDGAAVGKPITLKPGEEWRGRLELSVVPST 311
>TC10595 similar to UP|AAPC_PENCL (Q40784) Possible apospory-associated
protein C, partial (28%)
Length = 726
Score = 162 bits (411), Expect = 5e-41
Identities = 73/89 (82%), Positives = 81/89 (90%)
Frame = +3
Query: 231 AIIDHERKRTFEIRKDGLPDAVVWNPWDKKSKIISDLGDDEYKHMLCVQPACVEKAITLK 290
AIIDHE+KRTF + KDGLPDAVVWNPWDKK+K ++D GDDEYKHMLCV+ A +EK ITLK
Sbjct: 15 AIIDHEKKRTFVLLKDGLPDAVVWNPWDKKAKALADFGDDEYKHMLCVEAAAIEKPITLK 194
Query: 291 PGEEWKGRQEISAVPSSYCSGQLDPRKVL 319
PGEEWKGR E+SAVPSSYCSGQLDPRKVL
Sbjct: 195 PGEEWKGRLELSAVPSSYCSGQLDPRKVL 281
>BP046527
Length = 521
Score = 156 bits (394), Expect = 5e-39
Identities = 68/95 (71%), Positives = 82/95 (85%)
Frame = -1
Query: 210 GDAITFEGEVDKVYLSTPTKIAIIDHERKRTFEIRKDGLPDAVVWNPWDKKSKIISDLGD 269
GDAITF EVD++YLSTP KI+I+DHE+KR+F +RKDGLPDAVVWNPWDKK+K ++D GD
Sbjct: 521 GDAITFASEVDRIYLSTPAKISILDHEKKRSFVLRKDGLPDAVVWNPWDKKAKSMADFGD 342
Query: 270 DEYKHMLCVQPACVEKAITLKPGEEWKGRQEISAV 304
DEYKHM+CV+ A +EK ITLKPGEEW G E+S V
Sbjct: 341 DEYKHMVCVEAAAIEKPITLKPGEEWNGTLELSTV 237
>TC17007
Length = 576
Score = 92.8 bits (229), Expect = 7e-20
Identities = 40/64 (62%), Positives = 51/64 (79%)
Frame = +3
Query: 257 WDKKSKIISDLGDDEYKHMLCVQPACVEKAITLKPGEEWKGRQEISAVPSSYCSGQLDPR 316
WDKKSK++ DLGD++ + M+CV+ A ++ I LKP EEWKG QE+S V SSYCSGQLDPR
Sbjct: 3 WDKKSKVLPDLGDNDSQMMMCVKSAAIDSPILLKPSEEWKGYQELSTVSSSYCSGQLDPR 182
Query: 317 KVLF 320
VL+
Sbjct: 183 MVLY 194
>TC18409 weakly similar to UP|Q944A5 (Q944A5) AT3g01590/F4P13_13, partial
(51%)
Length = 609
Score = 92.4 bits (228), Expect = 9e-20
Identities = 66/159 (41%), Positives = 87/159 (54%)
Frame = +1
Query: 15 NGLEKIILRENRGFSAEVYLYGGQVTSWKNERGEELLFVSSKPEKEVKKTNQYNCFDMNN 74
+GL +I+L E G SAEV LYGGQ+ SWKN R EELLF+SSK ++ K +
Sbjct: 166 DGLPRILLTEPNGSSAEVLLYGGQIISWKNHRKEELLFMSSKANRKQLKAIRGGISAYFA 345
Query: 75 NKCRLILLLQDLYAEAFQYVFLKNKLWILDPNPPPFPTNSNSRAFVDLVLKNSEDDTKNW 134
L L + F +N+LW LD +P P N ++ VDL+LK++ D K
Sbjct: 346 RFGELGLF--------EHHGFARNRLWSLDRDPSPLSPLDN-QSCVDLILKSTGFDFKT- 495
Query: 135 PHRYEFRLRIALGPTGDLMLTSRIRNTNKDGKSFTFTFA 173
P E RLRI L G L+L R+RNT D K+ +F FA
Sbjct: 496 PCSXELRLRIFLS-AGKLILIPRVRNT--DNKAVSFAFA 603
>TC18943 similar to GB|AAM63374.1|21554299|AY086170 apospory-associated
protein C {Arabidopsis thaliana;}, partial (32%)
Length = 428
Score = 82.8 bits (203), Expect = 7e-17
Identities = 49/108 (45%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Frame = +2
Query: 15 NGLEKIILRENRGFSAEVYLYGGQVTSWKNERGEELLFVSSK----PEKEVKKTNQYNCF 70
NG+++ +LR RG SA V L+GGQV SWK ERGEELLF SSK P K V+ CF
Sbjct: 140 NGIDQFVLRNLRGSSATVSLHGGQVLSWKTERGEELLFSSSKAIFSPPKPVRGGIPI-CF 316
Query: 71 DMNNNKCRLILLLQDLYAEAFQYVFLKNKLWILDPNPPPFPTNSNSRA 118
+ L Q+ F +NKLW++D NPPP P +SN +A
Sbjct: 317 PQFGARGSL-----------EQHGFARNKLWVIDQNPPPLPGDSNGKA 427
>TC16617 similar to UP|Q9FJY6 (Q9FJY6) Apospory-associated protein C-like
protein, partial (42%)
Length = 551
Score = 47.8 bits (112), Expect = 3e-06
Identities = 23/49 (46%), Positives = 30/49 (60%)
Frame = +2
Query: 5 TMYVKHCMGVNGLEKIILRENRGFSAEVYLYGGQVTSWKNERGEELLFV 53
T+ VK G L K++L G AE+YL+GG +TSWK G +LLFV
Sbjct: 131 TLGVKLTEGEGSLPKLVLTSPAGSEAEIYLFGGCITSWKVPSGNDLLFV 277
>BP050115
Length = 537
Score = 47.4 bits (111), Expect = 3e-06
Identities = 32/115 (27%), Positives = 53/115 (45%)
Frame = -3
Query: 188 IEGLETLDYLDSLKNRERFTEQGDAITFEGEVDKVYLSTPTKIAIIDHERKRTFEIRKDG 247
++G +TL+ N TE+ D +TF G VD +YL ++ +DH I+
Sbjct: 532 LKGCKTLNQHPDPNNPVEGTEERDVVTFXGFVDCIYLDAAHELP-LDHGLGDLISIKNTN 356
Query: 248 LPDAVVWNPWDKKSKIISDLGDDEYKHMLCVQPACVEKAITLKPGEEWKGRQEIS 302
DAV+WNP + Y+ +CV+ A + ++ L+P W Q +S
Sbjct: 355 WSDAVLWNPHLQMEAC--------YQDFVCVENAKI-GSVQLEPEPTWTAVQHLS 218
>BP042459
Length = 529
Score = 41.2 bits (95), Expect = 2e-04
Identities = 23/78 (29%), Positives = 37/78 (46%)
Frame = -1
Query: 222 VYLSTPTKIAIIDHERKRTFEIRKDGLPDAVVWNPWDKKSKIISDLGDDEYKHMLCVQPA 281
VY + P +ID R+ + I ++G + +++P + + D Y +CV A
Sbjct: 421 VYTNAPRSFTVIDRGRRNSVVIGRNGFEETYLYSPGSR----VESYSKDAY---ICVGQA 263
Query: 282 CVEKAITLKPGEEWKGRQ 299
V + I L P E WKG Q
Sbjct: 262 AVLQPIVLGPEEVWKGGQ 209
>BI420290
Length = 398
Score = 27.3 bits (59), Expect = 3.6
Identities = 16/56 (28%), Positives = 27/56 (47%)
Frame = +2
Query: 240 TFEIRKDGLPDAVVWNPWDKKSKIISDLGDDEYKHMLCVQPACVEKAITLKPGEEW 295
T+ I + L +V+WN + ++K+IS +Y H+ P +E KP W
Sbjct: 89 TYGINLNVLQASVIWNICNAENKMISVERILQYTHIASEAPLVIEDC---KPPSNW 247
>TC13171
Length = 598
Score = 27.3 bits (59), Expect = 3.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 23 RENRGFSAEVYLYGGQVTSWKNERGEELLFVSSKP 57
RENRG S ++ + G+ W GEEL V +P
Sbjct: 218 RENRGSSQTLFEFEGE*RKWTL*GGEEL*EVEERP 114
>TC8540 similar to GB|AAM16209.1|20334906|AY094053 AT5g02020/T7H20_70
{Arabidopsis thaliana;}, partial (17%)
Length = 607
Score = 27.3 bits (59), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 102 ILDPNPPPFPTNSNSRAFVDLVLKNSED 129
+LDP+PP FP S R + + L + E+
Sbjct: 429 VLDPSPPIFPLTSERRETLPVTLGDGEN 346
>TC8541 similar to GB|AAM16209.1|20334906|AY094053 AT5g02020/T7H20_70
{Arabidopsis thaliana;}, partial (44%)
Length = 869
Score = 27.3 bits (59), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 102 ILDPNPPPFPTNSNSRAFVDLVLKNSED 129
+LDP+PP FP S R + + L + E+
Sbjct: 170 VLDPSPPIFPLTSERRETLPVTLGDGEN 87
>TC16098 homologue to UP|Q8LAQ5 (Q8LAQ5) Flower pigmentation protein ATAN11,
partial (79%)
Length = 919
Score = 26.9 bits (58), Expect = 4.6
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = +1
Query: 103 LDPNPPPFPTNSNSRA 118
+ PNPPP P SNSRA
Sbjct: 409 MKPNPPPPPPASNSRA 456
>TC9371
Length = 661
Score = 26.6 bits (57), Expect = 6.1
Identities = 19/49 (38%), Positives = 26/49 (52%)
Frame = +2
Query: 151 DLMLTSRIRNTNKDGKSFTFTFAYHTYLYVTDISEVRIEGLETLDYLDS 199
+LML RI KD SFT+ F Y Y +D E +++ L+ L L S
Sbjct: 86 NLMLKERIEVLIKDKNSFTYAFKYQRERY-SDYEE-KVQELQHLKPLVS 226
>TC19927 weakly similar to UP|O80689 (O80689) F8K4.2 protein, partial (14%)
Length = 529
Score = 26.2 bits (56), Expect = 7.9
Identities = 15/46 (32%), Positives = 24/46 (51%)
Frame = -2
Query: 72 MNNNKCRLILLLQDLYAEAFQYVFLKNKLWILDPNPPPFPTNSNSR 117
+NN C I++L +Y +Y KNK L PFP+ ++S+
Sbjct: 519 INNYVC*FIVILGFIYKYQIKYYLSKNKNQAL-----PFPSKTHSQ 397
>BP028625
Length = 566
Score = 26.2 bits (56), Expect = 7.9
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Frame = +3
Query: 80 ILLLQDLYAEAFQYVFLKNKLWILDPN---PPPFPTNSNSRAFVDLVLKNSEDDTKNWPH 136
IL LQ L +NK +P PPP T +S +F L DD H
Sbjct: 303 ILTLQQLLHPTINQTRNQNKQTRQNPPANPPPPHQTRPDSYSFPS*PLLRDGDDNSEAHH 482
Query: 137 RYEFRL 142
R++ L
Sbjct: 483 RHQVNL 500
>AW720274
Length = 523
Score = 26.2 bits (56), Expect = 7.9
Identities = 17/41 (41%), Positives = 19/41 (45%), Gaps = 14/41 (34%)
Frame = -1
Query: 151 DLMLTSRIRNTN--------------KDGKSFTFTFAYHTY 177
+L L +RIRNTN KD KSF FTF Y
Sbjct: 457 NLALHTRIRNTNVL*IEVSCACGNIIKDDKSFIFTFYCRMY 335
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,768,942
Number of Sequences: 28460
Number of extensions: 80348
Number of successful extensions: 509
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of query: 322
length of database: 4,897,600
effective HSP length: 90
effective length of query: 232
effective length of database: 2,336,200
effective search space: 541998400
effective search space used: 541998400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC144503.2