BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144502.3 + phase: 0 /pseudo
(657 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV779547 158 2e-39
AV406755 125 3e-29
TC12566 similar to UP|Q84XI1 (Q84XI1) RCa1 (Fragment), partial (... 122 2e-28
CB828263 114 5e-26
BP045440 108 4e-24
TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-contain... 107 6e-24
TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidat... 105 3e-23
AV409408 103 7e-23
BP065014 99 2e-21
BP065724 74 6e-14
TC15876 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-... 56 2e-08
BP064315 54 8e-08
AI967395 54 1e-07
TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like... 54 1e-07
AV408271 51 5e-07
TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-... 49 3e-06
TC12592 45 4e-05
BP068235 32 0.013
AW428699 36 0.017
AV406565 34 0.085
>AV779547
Length = 556
Score = 158 bits (400), Expect = 2e-39
Identities = 80/141 (56%), Positives = 104/141 (73%)
Frame = +1
Query: 28 VTFRGEDTRNNFTYHLFDAFNREGILAFRDDTNLPKGESIASELLRAIEDSYIFVAVLSR 87
V+FRGEDTRNNFT HL A +G + F+DDT L KG++I++EL++AIE S I + V S+
Sbjct: 109 VSFRGEDTRNNFTDHLLGALYGKGFVTFKDDTMLRKGKNISTELIQAIEGSQILIVVFSK 288
Query: 88 NYASSIWCLQELEKILECVHVSKKHVLPVFYDVDPPVVRKQSGIYCEAFVKHEQIFQQDS 147
YASS WCLQEL KI + + ++ VLPV DV P VRKQSG Y EAF+KHE+ F++D
Sbjct: 289 YYASSTWCLQELAKIADGIVGKRQTVLPVVCDVTPSEVRKQSGNYGEAFLKHEERFKEDL 468
Query: 148 QMVLRWREALTQVAGLSGCDL 168
+MV RWR+AL +VA LSG D+
Sbjct: 469 EMVQRWRKALAEVADLSGWDV 531
>AV406755
Length = 425
Score = 125 bits (313), Expect = 3e-29
Identities = 63/126 (50%), Positives = 82/126 (65%)
Frame = +3
Query: 13 VTVTLPRRKNYYDAFVTFRGEDTRNNFTYHLFDAFNREGILAFRDDTNLPKGESIASELL 72
+ V P+ K YD F++FRGE++R +FT HL+ A GI F D+ L +GE I+S LL
Sbjct: 51 IIVKKPKSKWSYDVFLSFRGEESRRSFTSHLYTALKNAGIKVFMDN-ELQRGEDISSSLL 227
Query: 73 RAIEDSYIFVAVLSRNYASSIWCLQELEKILECVHVSKKHVLPVFYDVDPPVVRKQSGIY 132
+AIEDS I + + S NY S WCL ELEKI+EC + V+PVFY+VDP +RKQ G
Sbjct: 228 KAIEDSRIAIIIFSTNYTGSKWCLDELEKIIECQRTIGQEVMPVFYNVDPSDIRKQRGTV 407
Query: 133 CEAFVK 138
EAF K
Sbjct: 408 GEAFRK 425
>TC12566 similar to UP|Q84XI1 (Q84XI1) RCa1 (Fragment), partial (28%)
Length = 918
Score = 122 bits (305), Expect = 2e-28
Identities = 73/190 (38%), Positives = 109/190 (56%), Gaps = 1/190 (0%)
Frame = +1
Query: 283 DEVYKVPLLDRTNSLQLLCRKAFKLDHILSSMKGWSMAYYIMLRAHR*QLKYRAHFC-GR 341
DE+Y+V + +SLQL AFK + L + S + LK F GR
Sbjct: 4 DEIYEVKEMSFEDSLQLFSLNAFKRNDPLETYIDLSKKLLSYAKGIPLALKVLGLFLYGR 183
Query: 342 DIFEWKSALARLRDSPDKDVMDVLRLSFDGLEESEKEIFLHIACFFNPSMEKYVKNVLNC 401
+ W+S L +L PD ++++VL+LS+DGL++ +K+IFL IACF+ +E+ V L+
Sbjct: 184 ERKAWESQLVKLEKLPDPEIINVLKLSYDGLDDDQKDIFLDIACFYLGHLEESVAQTLDS 363
Query: 402 CGFHADIGLRVLIDKSLISIDESFSSLKEESISMHGLLEELGRKIVQENSSKEPRKWSRL 461
CGF ADIG+ VL D+ LISI E I MH L+E +G++IV++ +P K SRL
Sbjct: 364 CGFFADIGMEVLKDRCLISI-------LEGRIVMHDLIEVMGKEIVRQQCPNDPGKRSRL 522
Query: 462 WLETQVDNVM 471
W + Q +V+
Sbjct: 523 WNDDQTYDVL 552
>CB828263
Length = 570
Score = 114 bits (285), Expect = 5e-26
Identities = 72/178 (40%), Positives = 98/178 (54%)
Frame = +2
Query: 60 NLPKGESIASELLRAIEDSYIFVAVLSRNYASSIWCLQELEKILECVHVSKKHVLPVFYD 119
+L +G+ I+S LLRAIE++ + V V S+NY +S WCL EL KILEC + VLPVFYD
Sbjct: 5 DLQRGDEISSSLLRAIEEAKLSVIVFSKNYGNSKWCLDELVKILECKRTRGQIVLPVFYD 184
Query: 120 VDPPVVRKQSGIYCEAFVKHEQIFQQDSQMVLRWREALTQVAGLSGCDLRDNLYDRISHQ 179
+DP VR Q+G Y EAFVKH Q+ V +WREAL + A LSG D N R+ +
Sbjct: 185 IDPSHVRNQTGTYAEAFVKHGQV-----DKVQKWREALREAANLSGWDCSVN---RMESE 340
Query: 180 FGACCFIDDVSKMFRLHDGPLGVQKQILYQTHGEEHNQICNLSTASNLIRRRLCRQRV 237
D + K+ R++ G L + Q + ++ T NL + QRV
Sbjct: 341 VIEKIAKDVLEKLNRVYVGDLDEKIAKFEQLAQLQREFYESIPTLENLNYHQATVQRV 514
>BP045440
Length = 535
Score = 108 bits (269), Expect = 4e-24
Identities = 64/154 (41%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Frame = -3
Query: 24 YDAFVTFRGEDTRNNFTYHLFDAFNREGILAFRDDTNLPKGESIASELLRAIEDSYIFVA 83
Y F++FRG DTR++FT L+ REG + F+DD +L G I +LL IE+S +
Sbjct: 527 YQIFISFRGMDTRDDFTKPLYQGLCREGFVTFKDDESLEGGSPI-EKLLDDIEESRFAII 351
Query: 84 VLSRNYASSIWCLQELEKILECVHVSKKH--VLPVFYDVDPPVVRKQSGIYCEAFVKHEQ 141
+LS+NYA S WCL+EL KILEC K+ VLP +V P VR Y +A KHE+
Sbjct: 350 ILSKNYAESEWCLKELSKILECKDQEGKNQLVLPSSTEVTPTEVRHVINRYADAMAKHEK 171
Query: 142 IFQQDSQMVLRWREALTQVAGLSGCDLRDNLYDR 175
DS+ + W++AL V L+G + + Y R
Sbjct: 170 -NGIDSKTIQAWKKALFDVCTLTGFEKPSDWYVR 72
>TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing protein
TSDC, partial (12%)
Length = 701
Score = 107 bits (267), Expect = 6e-24
Identities = 55/132 (41%), Positives = 75/132 (56%)
Frame = +1
Query: 43 LFDAFNREGILAFRDDTNLPKGESIASELLRAIEDSYIFVAVLSRNYASSIWCLQELEKI 102
L+ A REG F DD L G IA LL A E S + + V S NY S WCL EL KI
Sbjct: 1 LYHALRREGFKTFMDDEGLVGGNEIAKSLLDASEKSRLSIIVFSENYGYSSWCLDELVKI 180
Query: 103 LECVHVSKKHVLPVFYDVDPPVVRKQSGIYCEAFVKHEQIFQQDSQMVLRWREALTQVAG 162
+EC+ K+ V P+FY V+ V Q Y A + HE+ + +DS V +WR AL+ +A
Sbjct: 181 VECMETKKQLVWPIFYKVEKSDVTSQENSYEHAMIGHEKNYGKDSDEVKKWRSALSAMAK 360
Query: 163 LSGCDLRDNLYD 174
L G ++++N Y+
Sbjct: 361 LEGHNVKENKYE 396
>TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidate
resistance protein KR1, partial (6%)
Length = 586
Score = 105 bits (261), Expect = 3e-23
Identities = 63/141 (44%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Frame = +1
Query: 24 YDAFVTFRGEDTRNNFTYHLFDAFNREGILAFRDDTNLPKGESIASEL-LRAIEDSYIFV 82
YD F++ DTR F+ L+ A + +GIL F DD LP+ + I S + +AIE S I +
Sbjct: 103 YDVFISLITSDTRFGFSGDLYTALSDKGILTFIDD-GLPRPDDIMSTVNSKAIESSRIAI 279
Query: 83 AVLSRNYASSIWCLQELEKILECVHVSKKHVLPVFYDVDPPVVRKQSGIYCEAFVKHEQI 142
V+S NYASS +CL EL IL+ + PVFY V+P VR Q G + +AF HE+
Sbjct: 280 VVISENYASSSFCLDELMYILKRREEKGLLIWPVFYQVEPSDVRYQKGGFGKAFASHEER 459
Query: 143 FQQDSQMVLRWREALTQVAGL 163
F DS V +WR AL QVA L
Sbjct: 460 FGSDSAKVRKWRNALKQVADL 522
>AV409408
Length = 430
Score = 103 bits (258), Expect = 7e-23
Identities = 52/133 (39%), Positives = 78/133 (58%)
Frame = +2
Query: 339 CGRDIFEWKSALARLRDSPDKDVMDVLRLSFDGLEESEKEIFLHIACFFNPSMEKYVKNV 398
CGR + +W+ AL +++ P D+++ LR+S+D LE+ K +FL IACFF + V +
Sbjct: 44 CGRSLSDWEDALIKIKKVPHDDILNKLRISYDMLEDEHKTLFLDIACFFKGWYKHKVIQL 223
Query: 399 LNCCGFHADIGLRVLIDKSLISIDESFSSLKEESISMHGLLEELGRKIVQENSSKEPRKW 458
L CG H +G+ VLI+KSL++ D I MH LLEE+G+ V S +P +
Sbjct: 224 LGSCGLHPTVGINVLIEKSLLTFD-------GRVIGMHDLLEEMGKTEVFLESPNDPGRR 382
Query: 459 SRLWLETQVDNVM 471
SRLW +D V+
Sbjct: 383 SRLWSLEDIDQVL 421
>BP065014
Length = 498
Score = 99.4 bits (246), Expect = 2e-21
Identities = 52/111 (46%), Positives = 70/111 (62%)
Frame = -2
Query: 55 FRDDTNLPKGESIASELLRAIEDSYIFVAVLSRNYASSIWCLQELEKILECVHVSKKHVL 114
F+DD +L G I ELL AIE+S + + VLS N+A S WCL+EL KIL+C K VL
Sbjct: 497 FKDDLSLEDGAPI-EELLGAIEESRVAIVVLSENFADSKWCLKELVKILDCRKKKKPLVL 321
Query: 115 PVFYDVDPPVVRKQSGIYCEAFVKHEQIFQQDSQMVLRWREALTQVAGLSG 165
P+FY V+P +R G Y EA +HE+ +DSQ V W +AL+ ++ L G
Sbjct: 320 PIFYKVEPTNIRHLKGRYGEAMAEHEKKLGKDSQTVREWTQALSDISYLKG 168
>BP065724
Length = 495
Score = 74.3 bits (181), Expect = 6e-14
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = -1
Query: 89 YASSIWCLQELEKILECVHVSKKHVLPVFYDVDPPVVRKQSGIYCEAFVKHEQIFQQDSQ 148
YA S WCL+E+ KILEC + + V P+FY V+P VR Q Y +A +K E + +DS+
Sbjct: 495 YADSSWCLEEVVKILECKQKNDQLVWPIFYKVEPSDVRHQRNSYEKAMIKQETRYGKDSE 316
Query: 149 MVLRWREALTQVAGLSGCDLRDN 171
V +WR +L+QV L ++N
Sbjct: 315 KVKKWRSSLSQVCDLKAFHYKEN 247
>TC15876 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing
protein TSDC, partial (13%)
Length = 558
Score = 56.2 bits (134), Expect = 2e-08
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +1
Query: 102 ILECVHVSKKHVLPVFYDVDPPVVRKQSGIYCEAFVKHEQIFQQDSQMVLRWREALTQVA 161
ILEC + + V P+FY V+P VR Q Y +A +K E + +DS+ V +WR +L+QV
Sbjct: 16 ILECXQKNDQLVWPIFYKVEPSDVRHQRNSYEKAMIKPETRYGKDSEKVKKWRSSLSQVC 195
Query: 162 GLSGCDLRDNL-YDRISHQFGACCFIDDVSK 191
L ++N Y+R FI D+ K
Sbjct: 196 DLKAFHYKENSGYER--------AFIPDIIK 264
>BP064315
Length = 350
Score = 53.9 bits (128), Expect = 8e-08
Identities = 37/96 (38%), Positives = 57/96 (58%), Gaps = 5/96 (5%)
Frame = +1
Query: 228 IRRRLCRQRVLLIFDNVDKVEQLEKI-GVCVW*MVRWGSKIIIISRDEHILKFFGVDEV- 285
I+RRL +RVLL+ D+VDK++QL+ + G W GS+III +RD +L +D+V
Sbjct: 55 IKRRLSNKRVLLVLDDVDKIKQLQALAGGGDW--FGSGSRIIITTRDTTMLDKHKMDDVI 228
Query: 286 ---YKVPLLDRTNSLQLLCRKAFKLDHILSSMKGWS 318
YK+ L+ +SL+L C AF + + +G S
Sbjct: 229 MKKYKMEELNDHDSLELFCWHAFNMSTPAENFEGVS 336
>AI967395
Length = 205
Score = 53.5 bits (127), Expect = 1e-07
Identities = 26/67 (38%), Positives = 41/67 (60%)
Frame = +3
Query: 75 IEDSYIFVAVLSRNYASSIWCLQELEKILECVHVSKKHVLPVFYDVDPPVVRKQSGIYCE 134
I++S + + V S +YA S CL EL I++ + ++ + V PV+Y V+ P +R Q G Y E
Sbjct: 3 IQESRLIIVVFSEHYAVSASCLNELVNIVDVMIMNNQLVWPVYYGVEAPEIRHQRGRYGE 182
Query: 135 AFVKHEQ 141
A K E+
Sbjct: 183 AMAKFEE 203
>TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like, partial
(5%)
Length = 689
Score = 53.5 bits (127), Expect = 1e-07
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = -2
Query: 24 YDAFVTFRGEDTRNNFTYHLFDAFNREGILAFRDDTNLPKGESIASELLRAI 75
YD F+ FRG+DTR++F HL+ A + G+ F DD NL +G + EL + I
Sbjct: 202 YDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENLERGLELEPELQKLI 47
>AV408271
Length = 409
Score = 51.2 bits (121), Expect = 5e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = +1
Query: 4 SNNSSSSALVTVTLPRRKNYYDAFVTFRGEDTRNNFTYHLFDAFNREGILAFRDDTNLPK 63
S+N+ + V P ++ YD FV+FRGED R+ F HL DAF ++ I AF DD L +
Sbjct: 220 SDNAPQTNKHDVLDPPQEEKYDVFVSFRGEDIRDGFLSHLADAFRQKKINAFMDD-KLKR 396
Query: 64 GESI 67
G+ I
Sbjct: 397 GQEI 408
>TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing
protein TSDC, partial (11%)
Length = 494
Score = 48.5 bits (114), Expect = 3e-06
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = +1
Query: 113 VLPVFYDVDPPVVRKQSGIYCEAFVKHEQIFQQDSQMVLRWREALTQVAGLSGCDLRDNL 172
V P+FY++ V Q+ Y A + HE F +DS+ V +W+ AL+++A L G + +N
Sbjct: 10 VWPIFYEISXSDVSNQTKSYGHAMLAHENSFGKDSEKVQKWKSALSEMAFLQGEHITENE 189
Query: 173 YD 174
Y+
Sbjct: 190 YE 195
>TC12592
Length = 534
Score = 45.1 bits (105), Expect = 4e-05
Identities = 21/53 (39%), Positives = 31/53 (57%)
Frame = +3
Query: 113 VLPVFYDVDPPVVRKQSGIYCEAFVKHEQIFQQDSQMVLRWREALTQVAGLSG 165
VLPVFY V+P +R G + EA + E F +DS + W++AL ++ L G
Sbjct: 9 VLPVFYGVEPTDIRNLKGKFGEAMAEIENKFGKDSNTIHEWKQALRDISYLKG 167
>BP068235
Length = 511
Score = 32.3 bits (72), Expect(2) = 0.013
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 1/63 (1%)
Frame = -1
Query: 96 LQELEKILECVHVSKKHVLPVFYDVDPPVVRKQSGIYCEAFV-KHEQIFQQDSQMVLRWR 154
L L + LEC + + + P Y V+P +R + Y A F DS+ + W+
Sbjct: 475 LMNLSRFLECKKMKNQLLWPCPYKVEPSDIRYRPSSYGTALA*TRTDAFGNDSEKIQTWK 296
Query: 155 EAL 157
AL
Sbjct: 295 SAL 287
Score = 23.1 bits (48), Expect(2) = 0.013
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 85 LSRNYASSIWCLQELEKI 102
LS NYA S CL EL +I
Sbjct: 509 LSENYAYSARCLDELVQI 456
>AW428699
Length = 319
Score = 36.2 bits (82), Expect = 0.017
Identities = 29/97 (29%), Positives = 46/97 (46%), Gaps = 4/97 (4%)
Frame = +3
Query: 329 R*QLKYRAHFCGRDIFEWKSALARLRDSPDKDVMDVLRLSFDGLEESEKEIFLHIACFFN 388
R ++K H G K A+ D K + ++++ F L+ +EK +FL I C+
Sbjct: 6 RHEVKADKHLLGLSALTDKEAVKTFXD---KKIHNMVKKRFYSLKMAEKRVFLDIVCYGE 176
Query: 389 PSMEKYVKNVL----NCCGFHADIGLRVLIDKSLISI 421
V+++L CC +RVL+DKSLI I
Sbjct: 177 GYHLVDVQHILRAHYGCC---VTDYIRVLVDKSLIHI 278
>AV406565
Length = 207
Score = 33.9 bits (76), Expect = 0.085
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +2
Query: 1 MASSNNSSSSALVTVTLPRRKNYYDAFVTFRGEDTRNNFTYHLFDAFNREGILAFRDDTN 60
MA S SSS+ P++K +D F++FRGEDTR T HL R + + D +
Sbjct: 35 MAWSTTSSSA-------PQQK--HDVFLSFRGEDTRYTCTGHLQATLTRLQVKTY-IDYD 184
Query: 61 LPKGESI 67
L +G+ I
Sbjct: 185LQRGDEI 205
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.333 0.145 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,112,744
Number of Sequences: 28460
Number of extensions: 174781
Number of successful extensions: 1076
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of query: 657
length of database: 4,897,600
effective HSP length: 96
effective length of query: 561
effective length of database: 2,165,440
effective search space: 1214811840
effective search space used: 1214811840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144502.3