BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144484.10 - phase: 0
(589 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17386 similar to UP|Q9LU46 (Q9LU46) DEAD-box protein abstrakt,... 211 3e-55
TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eI... 187 5e-48
BI418105 142 2e-34
TC17926 similar to UP|IF43_NICPL (P41380) Eukaryotic initiation ... 116 9e-27
BP071239 112 2e-25
TC18826 similar to UP|Q9LUW5 (Q9LUW5) DEAD-box RNA helicase-like... 108 2e-24
TC14722 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (64%) 105 3e-23
TC12625 similar to UP|Q84TG1 (Q84TG1) At3g09720, partial (34%) 103 6e-23
AV411087 102 1e-22
BI420699 100 5e-22
TC12527 homologue to UP|Q9SWV9 (Q9SWV9) Ethylene-responsive RNA ... 100 1e-21
TC8003 homologue to PIR|S52023|S52023 translation initiation fac... 96 2e-20
TC8702 homologue to UP|IF42_ARATH (P41377) Eukaryotic initiation... 89 2e-18
BF177506 87 1e-17
AV407506 86 2e-17
TC9937 homologue to UP|IF43_NICPL (P41380) Eukaryotic initiation... 83 1e-16
TC8004 homologue to PIR|S52023|S52023 translation initiation fac... 76 2e-14
AV772770 70 7e-13
BP034176 69 2e-12
TC15066 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, p... 69 2e-12
>TC17386 similar to UP|Q9LU46 (Q9LU46) DEAD-box protein abstrakt, partial
(19%)
Length = 507
Score = 211 bits (536), Expect = 3e-55
Identities = 102/111 (91%), Positives = 103/111 (91%)
Frame = +2
Query: 479 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNEE 538
YVHRIGRTGRCGKTGIATTFI KNQS TTLLDLKHLL EAK RIPPVLAEL DPMEDNE
Sbjct: 2 YVHRIGRTGRCGKTGIATTFIIKNQSPTTLLDLKHLLLEAKPRIPPVLAELSDPMEDNEA 181
Query: 539 ITGISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYFGSGGYRGEI 589
IT ISGVKGCAYCGGLGHRIRDCPKLEHQKS+AIANNR DYFGSGGYRGEI
Sbjct: 182 ITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRHDYFGSGGYRGEI 334
>TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eIF4A-15,
complete
Length = 1563
Score = 187 bits (474), Expect = 5e-48
Identities = 118/389 (30%), Positives = 203/389 (51%), Gaps = 3/389 (0%)
Frame = +2
Query: 145 NFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIM 204
+F M + +L+ + G +P+ IQ +G+ G D+I A +G+GKT F ++
Sbjct: 209 SFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL- 385
Query: 205 MAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGI 264
+++ +V + L++ P+RELA+Q +V+ Y ++ C+GG
Sbjct: 386 ----QQLDYGLVQCQA---LVLAPTRELAQQIEKVMRAL------GDYLGVKVHACVGGT 526
Query: 265 DMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 324
+R I++ GVH VV TPGR+ DML ++ + D+ + LDEAD ++ GF+D I ++
Sbjct: 527 SVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDI 706
Query: 325 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQE--VEYVKQEA 382
F + Q +FSATMP + R + KP+ + V R L+ I++ V K+E
Sbjct: 707 FQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKR-DELTLEGIKQFYVNVEKEEW 883
Query: 383 KIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSF 441
K+ L + + +IF + VD + + + A HG DQ R+ + F
Sbjct: 884 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREF 1063
Query: 442 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 501
++G VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR+GR G+ G+A F+
Sbjct: 1064RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTL 1243
Query: 502 NQSETTLLDLKHLLQEAKQRIPPVLAELV 530
+ S L D++ + +P +A+L+
Sbjct: 1244DDSR-MLSDIQKFYNVTVEELPSNVADLL 1327
>BI418105
Length = 600
Score = 142 bits (357), Expect = 2e-34
Identities = 83/190 (43%), Positives = 114/190 (59%)
Frame = +3
Query: 109 WKPPLHIRRMSKKDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPT 168
++ P I MS++D +K I V+G ++P P+K F+D FP P++ +K +G +PT
Sbjct: 51 YEEPPSISGMSEQDVTDYRKSLAIRVSGFDVPKPVKTFEDCGFPPPVMSAIKKQGYEKPT 230
Query: 169 PIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICP 228
IQ Q LPV+LSGRD+IGIA TGSGKT FVLPMI+ M + + EGP G+I P
Sbjct: 231 SIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP---ELQKEEGPIGVICAP 401
Query: 229 SRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLK 288
+RELA+Q Y ++F K G +R GG+ Q + +K G IVVATPGRL
Sbjct: 402 TRELAQQIYLESKKF---AKSYG---IRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLI 563
Query: 289 DMLAKKKMNL 298
DML K + +
Sbjct: 564 DMLKMKALTM 593
>TC17926 similar to UP|IF43_NICPL (P41380) Eukaryotic initiation factor 4A-3
(eIF4A-3) (eIF-4A-3), partial (72%)
Length = 982
Score = 116 bits (291), Expect = 9e-27
Identities = 81/288 (28%), Positives = 141/288 (48%), Gaps = 3/288 (1%)
Frame = +2
Query: 143 IKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPM 202
I +F++M D +L+ + G +P+ IQ + + I+ GRD+I A +G+GKT + L +
Sbjct: 164 IGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTV 343
Query: 203 IMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIG 262
+ + + LI+ P+RELA QT +VI L + ++ C+G
Sbjct: 344 CQVVDTSVREVQV--------LILSPTRELASQTEKVI------LAVGDFINIQAHACVG 481
Query: 263 GIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 322
G + + ++ GVH+V TPGR+ DM+ ++ + + L LDE+D ++ GF+D I
Sbjct: 482 GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRTIKMLVLDESDEMLSRGFKDQIY 661
Query: 323 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQE--VEYVKQ 380
+V+ + Q L SAT+P +I + P+ + V R L+ I++ V ++
Sbjct: 662 DVYRYLPPDLQVCLISATLPHEILEITNKFMTDPVRILVKR-DELTLEGIKQFFVAVERE 838
Query: 381 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHG 427
E K L + T +IFC K VD + E + ++HG
Sbjct: 839 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHG 982
>BP071239
Length = 429
Score = 112 bits (280), Expect = 2e-25
Identities = 56/108 (51%), Positives = 73/108 (66%)
Frame = +3
Query: 422 AVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 481
A AIHG K Q ER++ +S F+ G+ VLVATDVA++GLD DI+ V+NYD P +E+YVH
Sbjct: 15 AAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVH 194
Query: 482 RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 529
RIGRTGR G TG+A TF Q DL +L+ A QR+P L ++
Sbjct: 195 RIGRTGRAGATGLAYTFF-AEQDAKYASDLIKVLEGANQRVPSELRDM 335
>TC18826 similar to UP|Q9LUW5 (Q9LUW5) DEAD-box RNA helicase-like protein,
partial (29%)
Length = 782
Score = 108 bits (270), Expect = 2e-24
Identities = 68/189 (35%), Positives = 103/189 (53%), Gaps = 2/189 (1%)
Frame = +3
Query: 147 KDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMA 206
K + + I+ L KGI + PIQ L + GRDMIG A TG+GKTL F +P+
Sbjct: 252 KKLGISEEIVSALAKKGISKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPI---- 419
Query: 207 MQEEIMMPIVPGEG--PFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGI 264
M + I G G P L + P+RELA+Q V +EF P L + GG
Sbjct: 420 MDKIIKFNAKHGRGRDPLALALAPTRELAKQ---VEKEFY-----DSAPNLDTICVNGGT 575
Query: 265 DMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 324
+ Q+ + GV +VV TPGR+ D+L + +NL +++ LDEAD+++ +GF++D+ ++
Sbjct: 576 PISQQMRQLDYGVDVVVGTPGRIIDLLNRGALNLKEVQFMVLDEADQMLQIGFQEDVEKI 755
Query: 325 FDHFKAQRQ 333
D +RQ
Sbjct: 756 LDRLPPKRQ 782
>TC14722 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (64%)
Length = 1448
Score = 105 bits (261), Expect = 3e-23
Identities = 70/256 (27%), Positives = 121/256 (46%), Gaps = 2/256 (0%)
Frame = +3
Query: 277 VHIVVATPGRLKDMLAKKKMNL-DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTL 335
VH++V + +L +K +C L +DEAD+L+ F+ I ++ RQ L
Sbjct: 225 VHLLVGKARKEY*ILQRKVFAF*KHCSMLVMDEADKLLSPEFQPSIEQLIQFLSPNRQIL 404
Query: 336 LFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTP 395
++SAT P +++F L KP ++N+ + Q +V++ K+ L K
Sbjct: 405 MYSATYPVTVKDFKERYLRKPYVINLMDELTLK-GITQFYAFVEERQKVHCLNTLFSKLQ 581
Query: 396 -PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDV 454
+IFC + V+ + + + G IH Q+ R F+ G LV TD+
Sbjct: 582 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 761
Query: 455 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 514
++G+D + VIN+D P E Y+HR+GR+GR G G+A I + L ++
Sbjct: 762 FTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRYGHLGLAVNLIT-YEDRFNLYRIEQE 938
Query: 515 LQEAKQRIPPVLAELV 530
L ++IPP + + +
Sbjct: 939 LGTEIKQIPPHIDQAI 986
>TC12625 similar to UP|Q84TG1 (Q84TG1) At3g09720, partial (34%)
Length = 549
Score = 103 bits (258), Expect = 6e-23
Identities = 66/186 (35%), Positives = 104/186 (55%), Gaps = 7/186 (3%)
Frame = +2
Query: 295 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDH-FKAQRQTL----LFSATMPTKIQNFA 349
K++L YL LDE+D+L FE D+ + D KA LFSAT+P +++ A
Sbjct: 2 KVDLSRVEYLVLDESDKL----FEPDLFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRA 169
Query: 350 RSALVKPIIVNVGRAGAANLDVIQEVEYV-KQEAKIVYLLECLQKT-PPPVLIFCENKAD 407
R + + V VGR A+ + Q++ + +E K++ + + ++ PPVL+F ++K
Sbjct: 170 RELMHDAVRVIVGRKNTASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKER 349
Query: 408 VDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 467
+++ L + IH QEERE AI +F+AGK VL+ATDV ++G+DF + V
Sbjct: 350 AKELYGELAFDNIRVDVIHSDLSQEERENAIDNFRAGKTWVLIATDVVARGMDFKAVNCV 529
Query: 468 INYDMP 473
INYD P
Sbjct: 530 INYDFP 547
>AV411087
Length = 420
Score = 102 bits (255), Expect = 1e-22
Identities = 59/139 (42%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Frame = +3
Query: 321 IREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQ 380
+R + + RQT LFSATMP K++ AR L P+ V VG G AN D+ Q V+ V
Sbjct: 3 VRSIVGQIRPDRQTSLFSATMPRKVEKLAREILSDPVRVIVGEVGMANEDITQVVQVVPS 182
Query: 381 EA-KIVYLLECLQKT--PPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYA 437
++ K+ +LLE L +T L+F KA VDDI L +G + A+HG KDQ R
Sbjct: 183 DSEKLPWLLEKLPETIDQGDTLVFASKKATVDDIETQLSQRGFKVAALHGDKDQASRMDI 362
Query: 438 ISSFKAGKKDVLVATDVAS 456
+ FK+G VL+ATDVA+
Sbjct: 363 LQKFKSGVYHVLIATDVAA 419
>BI420699
Length = 396
Score = 100 bits (250), Expect = 5e-22
Identities = 45/91 (49%), Positives = 66/91 (72%)
Frame = +2
Query: 398 VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASK 457
+LIF E K D + L ++G A++IHG K+Q ER++ ++ FK+G ++ ATDVA++
Sbjct: 38 ILIFMETKKGCDQLTRQLTMEGWPALSIHGDKNQAERDWVLAEFKSGISPIMTATDVAAR 217
Query: 458 GLDFPDIQHVINYDMPAEIENYVHRIGRTGR 488
GLD DI+ VINYD P+ +++YVHRIGRTGR
Sbjct: 218 GLDVKDIKFVINYDFPSSLQDYVHRIGRTGR 310
>TC12527 homologue to UP|Q9SWV9 (Q9SWV9) Ethylene-responsive RNA helicase,
partial (26%)
Length = 690
Score = 99.8 bits (247), Expect = 1e-21
Identities = 45/85 (52%), Positives = 61/85 (70%)
Frame = +1
Query: 411 IHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 470
I L + G A++IHG K Q ER++ +S FK+GK ++ ATDVA++GLD D+++VINY
Sbjct: 16 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINY 195
Query: 471 DMPAEIENYVHRIGRTGRCGKTGIA 495
D P +E+YVHRIGRTGR G G A
Sbjct: 196 DFPGSLEDYVHRIGRTGRAGAKGTA 270
>TC8003 homologue to PIR|S52023|S52023 translation initiation factor
eIF-4A.14 - common tobacco {Nicotiana tabacum;} ,
partial (34%)
Length = 708
Score = 95.5 bits (236), Expect = 2e-20
Identities = 46/132 (34%), Positives = 76/132 (56%)
Frame = +1
Query: 399 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKG 458
+IF + VD + + + + A HG DQ R+ + F++G VL+ TD+ ++G
Sbjct: 25 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 204
Query: 459 LDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEA 518
+D + VINYD+P + ENY+HRIGR+GR G+ G+A F+ K+ E L D++
Sbjct: 205 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKD-DERMLFDIQKFYNVV 381
Query: 519 KQRIPPVLAELV 530
+ +P +AEL+
Sbjct: 382 VEELPSNIAELL 417
>TC8702 homologue to UP|IF42_ARATH (P41377) Eukaryotic initiation factor
4A-2 (eIF4A-2) (eIF-4A-2), partial (32%)
Length = 595
Score = 89.4 bits (220), Expect = 2e-18
Identities = 44/131 (33%), Positives = 73/131 (55%)
Frame = +2
Query: 400 IFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 459
IF + VD + + + A HG DQ R+ + F++G VL+ TD+ ++G+
Sbjct: 2 IFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 181
Query: 460 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAK 519
D + VINYD+P + ENY+HRIGR+GR G+ G+A F+ + S L D++
Sbjct: 182 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSR-MLSDIQKFYHVTV 358
Query: 520 QRIPPVLAELV 530
+ +P +A+L+
Sbjct: 359 EELPSNVADLL 391
>BF177506
Length = 447
Score = 86.7 bits (213), Expect = 1e-17
Identities = 41/119 (34%), Positives = 73/119 (60%)
Frame = +2
Query: 115 IRRMSKKDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQG 174
+ M+++D + ++ ++I G +IP P++++ + R +LK ++ G P+PIQ+
Sbjct: 89 LEEMTERDWRIFREDFNISYKGSKIPRPMRSWDESRLSQELLKSVEKAGYKTPSPIQMAA 268
Query: 175 LPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELA 233
+P+ L RD+IG+A TGSGKT FVLPM+ + + EGP+ +++ P+RELA
Sbjct: 269 IPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELA 445
>AV407506
Length = 413
Score = 85.5 bits (210), Expect = 2e-17
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Frame = +2
Query: 321 IREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQ 380
I + + + RQT+LFSAT P +++ AR L KP+ + VG N D+ Q VE +
Sbjct: 5 ITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDISQLVEVRPE 184
Query: 381 EAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAI 438
+ LLE L + +LIF ++ D + + LL G +++HG KDQ +RE I
Sbjct: 185 NERFFRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTI 364
Query: 439 SSFKAGKKDVLVATDV 454
S FK+ ++LVAT +
Sbjct: 365 SDFKSNVCNLLVATSI 412
>TC9937 homologue to UP|IF43_NICPL (P41380) Eukaryotic initiation factor
4A-3 (eIF4A-3) (eIF-4A-3), partial (28%)
Length = 651
Score = 82.8 bits (203), Expect = 1e-16
Identities = 41/107 (38%), Positives = 64/107 (59%)
Frame = +2
Query: 424 AIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRI 483
++HG Q ER+ ++ F+AG VL+ TDV ++GLD + VINYD+P E Y+HRI
Sbjct: 29 SMHGDMPQRERDAIMAEFRAGSTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI 208
Query: 484 GRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELV 530
GR+GR G+ G+A F+ K+ L D++ +P +A+L+
Sbjct: 209 GRSGRFGRKGVAINFV-KSDDIKILRDIEQYYSTQIDEMPMNVADLI 346
>TC8004 homologue to PIR|S52023|S52023 translation initiation factor
eIF-4A.14 - common tobacco {Nicotiana tabacum;} ,
partial (20%)
Length = 607
Score = 75.9 bits (185), Expect = 2e-14
Identities = 34/83 (40%), Positives = 55/83 (65%)
Frame = +1
Query: 448 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETT 507
VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR+GR G+ G+A F++K+ E
Sbjct: 7 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVSKD-DERM 183
Query: 508 LLDLKHLLQEAKQRIPPVLAELV 530
L D++ + +P +AEL+
Sbjct: 184 LFDIQKFYNVVVEELPSNIAELL 252
>AV772770
Length = 484
Score = 70.5 bits (171), Expect = 7e-13
Identities = 49/158 (31%), Positives = 79/158 (49%), Gaps = 4/158 (2%)
Frame = +1
Query: 307 DEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR-SALVKPIIVNV--GR 363
DEADR+++ FED+++++ RQT LFSAT K+++ AR S PI ++V GR
Sbjct: 7 DEADRILEANFEDEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGR 186
Query: 364 AGAANLDVIQEVEYVKQEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEA 422
N + Q V + L L++ V++F + V + L L +
Sbjct: 187 NKVTNEGLQQGYVVVPCAKRFTVLYSFLKRNKSKKVMVFLSSCNSVKFHADLLNLIHMNC 366
Query: 423 VAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLD 460
+IHG + Q+ R F + +L+ TDVA++GLD
Sbjct: 367 SSIHGKQKQQARTTTFFDFCKAETGILLCTDVAARGLD 480
>BP034176
Length = 604
Score = 69.3 bits (168), Expect = 2e-12
Identities = 44/151 (29%), Positives = 73/151 (48%)
Frame = +2
Query: 146 FKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMM 205
F M + +L+ + G +P+ IQ +G G D+I A +G+GKT F ++
Sbjct: 188 FDSMGLHENLLRGIYAYGFERPSAIQQRGXVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 367
Query: 206 AMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGID 265
E + L++ P+RELA+Q +V+ Y ++ C+GG
Sbjct: 368 LNYELVQCQ--------ALVLAPTRELAQQIEKVMRAL------GDYLGVKVHACVGGTS 505
Query: 266 MRSQLEIVKKGVHIVVATPGRLKDMLAKKKM 296
+R I++ GVH VV TPGR+ DML ++ +
Sbjct: 506 VREDQRILQAGVHTVVGTPGRVFDMLRRQSL 598
>TC15066 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, partial
(44%)
Length = 699
Score = 68.9 bits (167), Expect = 2e-12
Identities = 43/153 (28%), Positives = 79/153 (51%)
Frame = +3
Query: 144 KNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMI 203
++F M + +L+ + G +P+ IQ +G+ G D+I A +G+GKT F ++
Sbjct: 276 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 455
Query: 204 MMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGG 263
+++ + + L++ P+RELA+Q +V+ Y ++ C+GG
Sbjct: 456 -----QQLDYSLTECQA---LVLAPTRELAQQIEKVMRAL------GDYLGVKVHACVGG 593
Query: 264 IDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKM 296
+R I+ GVH+VV TPGR+ DML ++ +
Sbjct: 594 TSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL 692
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,673,855
Number of Sequences: 28460
Number of extensions: 113963
Number of successful extensions: 552
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of query: 589
length of database: 4,897,600
effective HSP length: 95
effective length of query: 494
effective length of database: 2,193,900
effective search space: 1083786600
effective search space used: 1083786600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144484.10