BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144481.12 - phase: 0 /pseudo
(72 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11647 similar to UP|Q7X9H7 (Q7X9H7) MADS-box protein AGL62, pa... 96 2e-21
AV421179 60 6e-11
TC8956 similar to UP|Q9ZS28 (Q9ZS28) MADs-box protein, GDEF1, pa... 57 9e-10
AU252010 56 1e-09
TC17763 similar to UP|Q7Y1U9 (Q7Y1U9) SVP-like floral repressor,... 56 1e-09
TC17725 homologue to UP|Q8LLR2 (Q8LLR2) MADS-box protein 2, part... 52 2e-08
BP037461 51 4e-08
BP064158 50 6e-08
AU251498 47 5e-07
TC9670 homologue to UP|O64958 (O64958) CUM1, partial (65%) 32 5e-06
AU089354 40 1e-04
TC15855 25 2.8
TC17662 weakly similar to GB|AAP68292.1|31711872|BT008853 At5g11... 24 6.2
TC7852 similar to UP|Q9ZP07 (Q9ZP07) Ribulose 1,5-bisphosphate c... 24 6.2
TC14891 24 6.2
TC13937 weakly similar to UP|Q9LVE0 (Q9LVE0) Nitrate transporter... 24 6.2
>TC11647 similar to UP|Q7X9H7 (Q7X9H7) MADS-box protein AGL62, partial (25%)
Length = 843
Score = 95.5 bits (236), Expect = 2e-21
Identities = 46/61 (75%), Positives = 51/61 (83%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
M+NESNLQVTFSK +GLFKKASELC LC IAL+VFSP EKVFSFGHP+V+ VI RY
Sbjct: 115 MTNESNLQVTFSKRRSGLFKKASELCILCDVEIALVVFSPGEKVFSFGHPSVEAVIKRYF 294
Query: 61 S 61
S
Sbjct: 295 S 297
>AV421179
Length = 207
Score = 60.5 bits (145), Expect = 6e-11
Identities = 31/57 (54%), Positives = 39/57 (68%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVID 57
+ N S+ QVTFSK GLFKKA EL TLC A IALIVFS + K+F + ++ VI+
Sbjct: 36 IDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATNKLFEYASSSIQKVIE 206
>TC8956 similar to UP|Q9ZS28 (Q9ZS28) MADs-box protein, GDEF1, partial
(58%)
Length = 1100
Score = 56.6 bits (135), Expect = 9e-10
Identities = 28/61 (45%), Positives = 41/61 (66%), Gaps = 2/61 (3%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDT--VIDR 58
+ N +N QVT+SK NG+FKKA EL LC A ++LI+FS + K+ + P + T +ID+
Sbjct: 167 IENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKRIIDQ 346
Query: 59 Y 59
Y
Sbjct: 347 Y 349
>AU252010
Length = 328
Score = 55.8 bits (133), Expect = 1e-09
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +1
Query: 3 NESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTV--IDRYL 60
N SN QVT+SK NG+ KKA E+ LC A ++LI+F+ S K+ + P+ V ++RY
Sbjct: 4 NSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLVDMLERYH 183
Query: 61 SSTTSKQW 68
++ + W
Sbjct: 184KTSGKRLW 207
>TC17763 similar to UP|Q7Y1U9 (Q7Y1U9) SVP-like floral repressor, partial
(35%)
Length = 737
Score = 55.8 bits (133), Expect = 1e-09
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N + QVTFSK GLFKKA EL LC A +AL+VFS + K+F + + ++ +++R+
Sbjct: 531 IDNATARQVTFSKRRRGLFKKAEELSVLCDADVALVVFSSTGKLFEYSNLSMKEILERH 707
>TC17725 homologue to UP|Q8LLR2 (Q8LLR2) MADS-box protein 2, partial (45%)
Length = 970
Score = 52.0 bits (123), Expect = 2e-08
Identities = 26/47 (55%), Positives = 32/47 (67%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF 47
+ N+ N QVTF+K NGL KKA EL LC A +ALIVFS K++ F
Sbjct: 306 IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEF 446
>BP037461
Length = 551
Score = 51.2 bits (121), Expect = 4e-08
Identities = 25/47 (53%), Positives = 32/47 (67%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF 47
+ N+ N QVTF+K NGL KKA EL LC A +ALI+FS K++ F
Sbjct: 38 IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF 178
>BP064158
Length = 394
Score = 50.4 bits (119), Expect = 6e-08
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF 47
+ N +N QVTFSK NGL KKA EL LC +ALI+FSPS + F
Sbjct: 195 VENTTNRQVTFSKRRNGLIKKAYELSVLCXFDVALIMFSPSGRACLF 335
>AU251498
Length = 342
Score = 47.4 bits (111), Expect = 5e-07
Identities = 24/39 (61%), Positives = 27/39 (68%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFS 39
+ N +N QVTF K NGL KKA EL LC A +ALIVFS
Sbjct: 75 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS 191
>TC9670 homologue to UP|O64958 (O64958) CUM1, partial (65%)
Length = 1060
Score = 32.3 bits (72), Expect(2) = 5e-06
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTL 28
+ N +N QVTF K NGL KKA EL L
Sbjct: 10 IENTTNRQVTFCKRRNGLLKKAYELSVL 93
Score = 31.2 bits (69), Expect(2) = 5e-06
Identities = 13/31 (41%), Positives = 20/31 (63%)
Frame = +3
Query: 29 CGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
C A +ALIVFS +++ + + +V IDRY
Sbjct: 93 CDAEVALIVFSSRGRLYEYANNSVKATIDRY 185
>AU089354
Length = 178
Score = 39.7 bits (91), Expect = 1e-04
Identities = 18/54 (33%), Positives = 32/54 (58%), Gaps = 2/54 (3%)
Frame = +3
Query: 17 GLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTV--IDRYLSSTTSKQW 68
G+ KKA E+ LC A ++LI F+ S K+ + P++ V ++RY ++ + W
Sbjct: 3 GILKKAIEITVLCXAQVSLIXFAASGKMHDYIRPSITXVEMLERYXKTSGKRLW 164
>TC15855
Length = 529
Score = 25.0 bits (53), Expect = 2.8
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +2
Query: 17 GLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYLSSTTSKQWP 69
GL AS LC Y F PSE+ SF ++ + +S T +P
Sbjct: 62 GLCTTASNLCPDRDVYAFWDPFHPSERAHSF-------IVQQIMSGNTEYMYP 199
>TC17662 weakly similar to GB|AAP68292.1|31711872|BT008853 At5g11730
{Arabidopsis thaliana;}, partial (6%)
Length = 513
Score = 23.9 bits (50), Expect = 6.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 46 SFGHPNVDTVIDRYLSSTTSKQ 67
SF P ++ IDRYLSST S++
Sbjct: 143 SFSLPKIN--IDRYLSSTQSRK 84
>TC7852 similar to UP|Q9ZP07 (Q9ZP07) Ribulose 1,5-bisphosphate carboxylase
small subunit precursor , partial (98%)
Length = 847
Score = 23.9 bits (50), Expect = 6.2
Identities = 14/34 (41%), Positives = 16/34 (46%)
Frame = +1
Query: 14 HCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF 47
HC + S L +L Y V SPS VFSF
Sbjct: 544 HCT----QTSRLLSLKSTYKKAFVASPSSHVFSF 633
>TC14891
Length = 1172
Score = 23.9 bits (50), Expect = 6.2
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = +1
Query: 9 VTFSKHCNGLFKKASELCTLCGAYIAL 35
+ F H G+ + ++LCT CG YI L
Sbjct: 229 LVFQTHQLGILSQHTKLCTSCG-YIPL 306
>TC13937 weakly similar to UP|Q9LVE0 (Q9LVE0) Nitrate transporter
(AT3g21670/MIL23_23), partial (27%)
Length = 558
Score = 23.9 bits (50), Expect = 6.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 30 GAYIALIVFSPSEKVFSFGHPNVDTVIDRYLSSTTSKQWP 69
GA++ +V +P K D I RYL S TS + P
Sbjct: 420 GAFMLGMVVAPVNKHIPTAEMVADIAIVRYLPSLTSARKP 301
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,408,150
Number of Sequences: 28460
Number of extensions: 15861
Number of successful extensions: 95
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of query: 72
length of database: 4,897,600
effective HSP length: 48
effective length of query: 24
effective length of database: 3,531,520
effective search space: 84756480
effective search space used: 84756480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)
Medicago: description of AC144481.12