TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144477.14 + phase: 1 /pseudo
         (190 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19486 similar to UP|Q9SJ74 (Q9SJ74) Expressed protein, partial...    32  0.069
AV410246                                                               31  0.15
TC16000 similar to UP|Q9FQD5 (Q9FQD5) Glutathione S-transferase ...    28  1.3
AV766359                                                               25  6.5
TC20228 similar to UP|Q7R154 (Q7R154) GLP_447_72384_72238, parti...    25  8.5
TC7979 similar to UP|Q9SJM6 (Q9SJM6) At2g36320 protein (Zinc fin...    25  8.5
TC7980 similar to UP|Q9SJM6 (Q9SJM6) At2g36320 protein (Zinc fin...    25  8.5

>TC19486 similar to UP|Q9SJ74 (Q9SJ74) Expressed protein, partial (31%)
          Length = 510

 Score = 32.0 bits (71), Expect = 0.069
 Identities = 27/97 (27%), Positives = 41/97 (41%), Gaps = 7/97 (7%)
 Frame = +1

Query: 95  LGPGVDDHITEKILDPTYLDGVAGTFSSLKNVLQRSSTTAKAWVGEAGGAWNSGHHLVSD 154
           L PGV+  +  K+    +  G   T + L    +R+              W S HH V  
Sbjct: 22  LSPGVEYRLHRKLGIAVFCLGAMQTLALLFRPNERNRFRKY---------WKSYHHFVGY 174

Query: 155 A-----FVNSFWYFDQLGMSATYSTKTYC--RQTLIG 184
           +     FVN F  F+ +G S +Y+  +YC    T+IG
Sbjct: 175 SCVVLGFVNVFQGFEVMGASRSYAKLSYCLGLSTMIG 285


>AV410246 
          Length = 426

 Score = 30.8 bits (68), Expect = 0.15
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = -3

Query: 114 DGVAGTFSSLKNVLQRSSTTAKAWVGEAGGAWNSGHHLVSDAFVNS----FWYFDQLGMS 169
           D  A  +S +K+    SS ++++    + G   S    V+DA  +     FWY D+L + 
Sbjct: 205 DRAAIVYSIMKSSSSSSSPSSRSASNSSSGTEGSSSPSVTDAISDGWNSIFWYSDRLNLR 26

Query: 170 ATYSTKTY 177
           + +S++++
Sbjct: 25  SGFSSRSF 2


>TC16000 similar to UP|Q9FQD5 (Q9FQD5) Glutathione S-transferase GST 23  ,
           partial (73%)
          Length = 627

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 10/39 (25%), Positives = 20/39 (50%)
 Frame = +2

Query: 72  NWFKKFLNRSEKLADVVTHHIYNLGPGVDDHITEKILDP 110
           +W+   ++R  ++  V+  H  NL PG   ++   +L P
Sbjct: 326 HWYPSDISRRARIQSVLDWHHLNLRPGAASYVLNTVLAP 442


>AV766359 
          Length = 347

 Score = 25.4 bits (54), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 141 AGGAWNSGHHLVSDAFVNSFWYFDQLGMSAT 171
           +GG W+S   +    +  +FWYF    ++AT
Sbjct: 183 SGGGWSSFRRVSRATYPLAFWYFPVPPITAT 275


>TC20228 similar to UP|Q7R154 (Q7R154) GLP_447_72384_72238, partial (33%)
          Length = 509

 Score = 25.0 bits (53), Expect = 8.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 121 SSLKNVLQRSSTTAKAWVGEAGGAWNS 147
           SSLK++L++SS     W G  GG  +S
Sbjct: 97  SSLKSLLEQSSMRV*VWGGGFGGGHDS 177


>TC7979 similar to UP|Q9SJM6 (Q9SJM6) At2g36320 protein (Zinc finger-like
           protein), partial (73%)
          Length = 1262

 Score = 25.0 bits (53), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (49%)
 Frame = -2

Query: 136 AWVGEAGGAWNSGHHLVSDAFVNSFWYF 163
           A+  E  G W +G   V DA   +FW F
Sbjct: 331 AFGAEIHGGWTAGEAAVVDAETVTFWSF 248


>TC7980 similar to UP|Q9SJM6 (Q9SJM6) At2g36320 protein (Zinc finger-like
           protein), partial (36%)
          Length = 670

 Score = 25.0 bits (53), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (49%)
 Frame = -1

Query: 136 AWVGEAGGAWNSGHHLVSDAFVNSFWYF 163
           A+  E  G W +G   V DA   +FW F
Sbjct: 517 AFGAEIHGGWTAGEAAVVDAETVTFWSF 434


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,401,204
Number of Sequences: 28460
Number of extensions: 40834
Number of successful extensions: 187
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of query: 190
length of database: 4,897,600
effective HSP length: 85
effective length of query: 105
effective length of database: 2,478,500
effective search space: 260242500
effective search space used: 260242500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)